Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 17:28990979-29200722

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73 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stk38 17 28970880 to 29007995 37115 - protein coding gene serine/threonine kinase 38
Cpgi8905 17 29007112 to 29008269 1157 CpG island CpG island 8905
Tssr147163 17 29007805 to 29007830 25 - TSS region transcription start site region 147163
Tssr147164 17 29007833 to 29007856 23 - TSS region transcription start site region 147164
Tssr147165 17 29007861 to 29007872 11 - TSS region transcription start site region 147165
Tssr147166 17 29007925 to 29007962 37 - TSS region transcription start site region 147166
Tssr147167 17 29007991 to 29008002 11 - TSS region transcription start site region 147167
Tssr5059 17 29008098 to 29008128 30 - TSS region transcription start site region 5059
Gm16196 17 29014642 to 29032568 17926 - lncRNA gene predicted gene 16196
Gm16195 17 29021293 to 29022402 1109 + lncRNA gene predicted gene 16195
Cpgi8906 17 29031814 to 29033024 1210 CpG island CpG island 8906
Tssr147168 17 29032396 to 29032412 16 - TSS region transcription start site region 147168
Srsf3 17 29032660 to 29043372 10712 + protein coding gene serine and arginine-rich splicing factor 3
Tssr143490 17 29032664 to 29032681 17 + TSS region transcription start site region 143490
Tssr143491 17 29040991 to 29041002 11 + TSS region transcription start site region 143491
Tssr143492 17 29047215 to 29047218 3 + TSS region transcription start site region 143492
Tssr147169 17 29052029 to 29052057 28 - TSS region transcription start site region 147169
Gm41556 17 29056348 to 29059553 3205 + lncRNA gene predicted gene, 41556
Tssr147170 17 29056739 to 29056743 4 - TSS region transcription start site region 147170
Trp53cor1 17 29057474 to 29079126 21652 - lncRNA gene tumor protein p53 pathway corepressor 1
Gm27599 17 29059744 to 29059917 173 + unclassified non-coding RNA gene predicted gene, 27599
Tssr147171 17 29078832 to 29078841 9 - TSS region transcription start site region 147171
Tssr147172 17 29078926 to 29078944 18 - TSS region transcription start site region 147172
Tssr147173 17 29078953 to 29078972 19 - TSS region transcription start site region 147173
Tssr147174 17 29078982 to 29078994 12 - TSS region transcription start site region 147174
Tssr147175 17 29079023 to 29079041 18 - TSS region transcription start site region 147175
Tssr147176 17 29079060 to 29079075 15 - TSS region transcription start site region 147176
Tssr147177 17 29079094 to 29079133 39 - TSS region transcription start site region 147177
Tssr147178 17 29080822 to 29080856 34 - TSS region transcription start site region 147178
Tssr143493 17 29081576 to 29081587 11 + TSS region transcription start site region 143493
Tssr143494 17 29090695 to 29090725 30 + TSS region transcription start site region 143494
Tssr147179 17 29090851 to 29090876 25 - TSS region transcription start site region 147179
Tssr147180 17 29090883 to 29090894 11 - TSS region transcription start site region 147180
Tssr143495 17 29090969 to 29091020 51 + TSS region transcription start site region 143495
Cdkn1a 17 29090979 to 29100722 9743 + protein coding gene cyclin-dependent kinase inhibitor 1A (P21)
Tssr143496 17 29091118 to 29091125 7 + TSS region transcription start site region 143496
1700023B13Rik 17 29093416 to 29094461 1045 - lncRNA gene RIKEN cDNA 1700023B13 gene
Cpgi8907 17 29093517 to 29095813 2296 CpG island CpG island 8907
Tssr143497 17 29093763 to 29093781 18 + TSS region transcription start site region 143497
Tssr147181 17 29095409 to 29095416 7 - TSS region transcription start site region 147181
Cpgi8908 17 29098332 to 29098829 497 CpG island CpG island 8908
Tssr143498 17 29098580 to 29098592 12 + TSS region transcription start site region 143498
Tssr143499 17 29098599 to 29098645 46 + TSS region transcription start site region 143499
Tssr143500 17 29098729 to 29098740 11 + TSS region transcription start site region 143500
Tssr143501 17 29098757 to 29098815 58 + TSS region transcription start site region 143501
Tssr143502 17 29099348 to 29099351 3 + TSS region transcription start site region 143502
Tssr143503 17 29099422 to 29099463 41 + TSS region transcription start site region 143503
Tssr143504 17 29099494 to 29099540 46 + TSS region transcription start site region 143504
Tssr147182 17 29099525 to 29099586 61 - TSS region transcription start site region 147182
Tssr147183 17 29099624 to 29099638 14 - TSS region transcription start site region 147183
Tssr143505 17 29099637 to 29099652 15 + TSS region transcription start site region 143505
Tssr143506 17 29099688 to 29099699 11 + TSS region transcription start site region 143506
Tssr143507 17 29099746 to 29099771 25 + TSS region transcription start site region 143507
Tssr143508 17 29099804 to 29099816 12 + TSS region transcription start site region 143508
Tssr143509 17 29100068 to 29100112 44 + TSS region transcription start site region 143509
Tssr143510 17 29100132 to 29100146 14 + TSS region transcription start site region 143510
Tssr143511 17 29100270 to 29100281 11 + TSS region transcription start site region 143511
Tssr143512 17 29100323 to 29100340 17 + TSS region transcription start site region 143512
Tssr143513 17 29100422 to 29100443 21 + TSS region transcription start site region 143513
Tssr143514 17 29114142 to 29114202 60 + TSS region transcription start site region 143514
Rab44 17 29114145 to 29148980 34835 + protein coding gene RAB44, member RAS oncogene family
Tssr143515 17 29114500 to 29114504 4 + TSS region transcription start site region 143515
Tssr143516 17 29135409 to 29135434 25 + TSS region transcription start site region 143516
Rpl35a-ps3 17 29136972 to 29137304 332 - pseudogene ribosomal protein L35A, pseudogene 3
Tssr143517 17 29142321 to 29142323 2 + TSS region transcription start site region 143517
Tssr147184 17 29148975 to 29148989 14 - TSS region transcription start site region 147184
Gm18271 17 29154480 to 29155277 797 + pseudogene predicted gene, 18271
Cpgi8909 17 29156495 to 29156716 221 CpG island CpG island 8909
Cpne5 17 29156521 to 29237790 81269 - protein coding gene copine V
Tssr147185 17 29167442 to 29167461 19 - TSS region transcription start site region 147185
D17Mit145 17 29187447 to 29187550 103 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 145
Tssr147186 17 29189091 to 29189107 16 - TSS region transcription start site region 147186
Tssr147187 17 29189110 to 29189122 12 - TSS region transcription start site region 147187