Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:28772448-29149549

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq5 17 25731951 to 28773124 3041173 QTL open field activity QTL 5
Mapk13 17 28769315 to 28778704 9389 + protein coding gene mitogen-activated protein kinase 13
Tssr143467 17 28786060 to 28786064 4 + TSS region transcription start site region 143467
Gm49864 17 28799494 to 28801623 2129 - bidirectional promoter lncRNA gene predicted gene, 49864
Cpgi8898 17 28800449 to 28802108 1659 CpG island CpG island 8898
Tssr143468 17 28800753 to 28800785 32 + TSS region transcription start site region 143468
Brpf3 17 28800763 to 28838789 38026 + protein coding gene bromodomain and PHD finger containing, 3
Tssr143469 17 28801091 to 28801145 54 + TSS region transcription start site region 143469
Tssr143470 17 28801150 to 28801173 23 + TSS region transcription start site region 143470
Tssr147154 17 28801586 to 28801600 14 - TSS region transcription start site region 147154
Tssr147155 17 28801603 to 28801621 18 - TSS region transcription start site region 147155
Tssr143471 17 28801771 to 28801822 51 + TSS region transcription start site region 143471
Tssr143472 17 28817678 to 28817692 14 + TSS region transcription start site region 143472
Tssr143473 17 28817703 to 28817721 18 + TSS region transcription start site region 143473
Tssr143474 17 28817735 to 28817749 14 + TSS region transcription start site region 143474
Gm35883 17 28822143 to 28822757 614 - antisense lncRNA gene predicted gene, 35883
Tssr143475 17 28823572 to 28823602 30 + TSS region transcription start site region 143475
Tssr143476 17 28823609 to 28823659 50 + TSS region transcription start site region 143476
Tssr143477 17 28823666 to 28823707 41 + TSS region transcription start site region 143477
Tssr143478 17 28847976 to 28847980 4 + TSS region transcription start site region 143478
Pnpla1os 17 28852055 to 28859508 7453 - antisense lncRNA gene patatin-like phospholipase domain containing 1, opposite strand
D17Jcs60 17 28852785 to 28852988 203 DNA segment DNA segment, Chr 17, John C. Schimenti 60
Cpgi8899 17 28858299 to 28858536 237 CpG island CpG island 8899
Pnpla1 17 28858411 to 28890309 31898 + protein coding gene patatin-like phospholipase domain containing 1
Tssr143479 17 28858466 to 28858499 33 + TSS region transcription start site region 143479
Tssr143480 17 28858511 to 28858553 42 + TSS region transcription start site region 143480
Tssr143481 17 28858565 to 28858573 8 + TSS region transcription start site region 143481
Tssr5057 17 28864746 to 28864747 1 + TSS region transcription start site region 5057
Tssr143482 17 28872603 to 28872608 5 + TSS region transcription start site region 143482
Tssr143483 17 28872618 to 28872627 9 + TSS region transcription start site region 143483
Cpgi8900 17 28876887 to 28877159 272 CpG island CpG island 8900
Cpgi8901 17 28879898 to 28880425 527 CpG island CpG island 8901
Tssr143484 17 28895745 to 28895754 9 + TSS region transcription start site region 143484
4930539E08Rik 17 28896392 to 28915324 18932 - protein coding gene RIKEN cDNA 4930539E08 gene
Cpgi8902 17 28899307 to 28899940 633 CpG island CpG island 8902
Tssr147156 17 28899704 to 28899716 12 - TSS region transcription start site region 147156
Tssr143485 17 28905229 to 28905248 19 + TSS region transcription start site region 143485
1700030A11Rik 17 28905265 to 28906771 1506 + antisense lncRNA gene RIKEN cDNA 1700030A11 gene
Cpgi8903 17 28909278 to 28909814 536 CpG island CpG island 8903
Tssr147157 17 28909382 to 28909407 25 - TSS region transcription start site region 147157
Tssr147158 17 28915314 to 28915330 16 - TSS region transcription start site region 147158
Gm16191 17 28925463 to 28937125 11662 + antisense lncRNA gene predicted gene 16191
Pxt1 17 28933986 to 28942262 8276 - protein coding gene peroxisomal, testis specific 1
Tssr147159 17 28942224 to 28942254 30 - TSS region transcription start site region 147159
Tssr147160 17 28942255 to 28942270 15 - TSS region transcription start site region 147160
Tssr147161 17 28943835 to 28943840 5 - TSS region transcription start site region 147161
Gm49868 17 28946571 to 28947195 624 - pseudogene predicted gene, 49868
1700063J08Rik 17 28951855 to 28952408 553 - bidirectional promoter lncRNA gene RIKEN cDNA 1700063J08 gene
Tssr143486 17 28951965 to 28951978 13 + TSS region transcription start site region 143486
Cpgi8904 17 28952110 to 28952833 723 CpG island CpG island 8904
Tssr143487 17 28952412 to 28952423 11 + TSS region transcription start site region 143487
Tssr143488 17 28952425 to 28952532 107 + TSS region transcription start site region 143488
Kctd20 17 28952448 to 28969549 17101 + protein coding gene potassium channel tetramerisation domain containing 20
Tssr5058 17 28952681 to 28952697 16 + TSS region transcription start site region 5058
D17Mit248 17 28956504 to 28956604 100 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 248
D17Dcr2 17 28956760 to 28956881 121 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 2
Stk38 17 28970880 to 29007995 37115 - protein coding gene serine/threonine kinase 38
Tssr143489 17 28970882 to 28970890 8 + TSS region transcription start site region 143489
Tssr147162 17 28981301 to 28981345 44 - TSS region transcription start site region 147162
Gm23887 17 28989977 to 28990148 171 - snRNA gene predicted gene, 23887
Cpgi8905 17 29007112 to 29008269 1157 CpG island CpG island 8905
Tssr147163 17 29007805 to 29007830 25 - TSS region transcription start site region 147163
Tssr147164 17 29007833 to 29007856 23 - TSS region transcription start site region 147164
Tssr147165 17 29007861 to 29007872 11 - TSS region transcription start site region 147165
Tssr147166 17 29007925 to 29007962 37 - TSS region transcription start site region 147166
Tssr147167 17 29007991 to 29008002 11 - TSS region transcription start site region 147167
Tssr5059 17 29008098 to 29008128 30 - TSS region transcription start site region 5059
Gm16196 17 29014642 to 29032568 17926 - bidirectional promoter lncRNA gene predicted gene 16196
Gm16195 17 29021293 to 29022402 1109 + lincRNA gene predicted gene 16195
Cpgi8906 17 29031814 to 29033024 1210 CpG island CpG island 8906
Tssr147168 17 29032396 to 29032412 16 - TSS region transcription start site region 147168
Srsf3 17 29032660 to 29043372 10712 + protein coding gene serine/arginine-rich splicing factor 3
Tssr143490 17 29032664 to 29032681 17 + TSS region transcription start site region 143490
Tssr143491 17 29040991 to 29041002 11 + TSS region transcription start site region 143491
Tssr143492 17 29047215 to 29047218 3 + TSS region transcription start site region 143492
Tssr147169 17 29052029 to 29052057 28 - TSS region transcription start site region 147169
Gm41556 17 29055539 to 29059553 4014 + lincRNA gene predicted gene, 41556
Tssr147170 17 29056739 to 29056743 4 - TSS region transcription start site region 147170
Trp53cor1 17 29057474 to 29079126 21652 - lincRNA gene tumor protein p53 pathway corepressor 1
Gm27599 17 29059744 to 29059917 173 + unclassified non-coding RNA gene predicted gene, 27599
Tssr147171 17 29078832 to 29078841 9 - TSS region transcription start site region 147171
Tssr147172 17 29078926 to 29078944 18 - TSS region transcription start site region 147172
Tssr147173 17 29078953 to 29078972 19 - TSS region transcription start site region 147173
Tssr147174 17 29078982 to 29078994 12 - TSS region transcription start site region 147174
Tssr147175 17 29079023 to 29079041 18 - TSS region transcription start site region 147175
Tssr147176 17 29079060 to 29079075 15 - TSS region transcription start site region 147176
Tssr147177 17 29079094 to 29079133 39 - TSS region transcription start site region 147177
Tssr147178 17 29080822 to 29080856 34 - TSS region transcription start site region 147178
Tssr143493 17 29081576 to 29081587 11 + TSS region transcription start site region 143493
Tssr143494 17 29090695 to 29090725 30 + TSS region transcription start site region 143494
Tssr147179 17 29090851 to 29090876 25 - TSS region transcription start site region 147179
Tssr147180 17 29090883 to 29090894 11 - TSS region transcription start site region 147180
Tssr143495 17 29090969 to 29091020 51 + TSS region transcription start site region 143495
Cdkn1a 17 29090979 to 29100722 9743 + protein coding gene cyclin-dependent kinase inhibitor 1A (P21)
Tssr143496 17 29091118 to 29091125 7 + TSS region transcription start site region 143496
1700023B13Rik 17 29093416 to 29094461 1045 - unclassified gene RIKEN cDNA 1700023B13 gene
Cpgi8907 17 29093517 to 29095813 2296 CpG island CpG island 8907
Tssr143497 17 29093763 to 29093781 18 + TSS region transcription start site region 143497
Tssr147181 17 29095409 to 29095416 7 - TSS region transcription start site region 147181
Cpgi8908 17 29098332 to 29098829 497 CpG island CpG island 8908
Tssr143498 17 29098580 to 29098592 12 + TSS region transcription start site region 143498
Tssr143499 17 29098599 to 29098645 46 + TSS region transcription start site region 143499
Tssr143500 17 29098729 to 29098740 11 + TSS region transcription start site region 143500
Tssr143501 17 29098757 to 29098815 58 + TSS region transcription start site region 143501
Tssr143502 17 29099348 to 29099351 3 + TSS region transcription start site region 143502
Tssr143503 17 29099422 to 29099463 41 + TSS region transcription start site region 143503
Tssr143504 17 29099494 to 29099540 46 + TSS region transcription start site region 143504
Tssr147182 17 29099525 to 29099586 61 - TSS region transcription start site region 147182
Tssr147183 17 29099624 to 29099638 14 - TSS region transcription start site region 147183
Tssr143505 17 29099637 to 29099652 15 + TSS region transcription start site region 143505
Tssr143506 17 29099688 to 29099699 11 + TSS region transcription start site region 143506
Tssr143507 17 29099746 to 29099771 25 + TSS region transcription start site region 143507
Tssr143508 17 29099804 to 29099816 12 + TSS region transcription start site region 143508
Tssr143509 17 29100068 to 29100112 44 + TSS region transcription start site region 143509
Tssr143510 17 29100132 to 29100146 14 + TSS region transcription start site region 143510
Tssr143511 17 29100270 to 29100281 11 + TSS region transcription start site region 143511
Tssr143512 17 29100323 to 29100340 17 + TSS region transcription start site region 143512
Tssr143513 17 29100422 to 29100443 21 + TSS region transcription start site region 143513
Tssr143514 17 29114142 to 29114202 60 + TSS region transcription start site region 143514
Rab44 17 29114145 to 29148980 34835 + protein coding gene RAB44, member RAS oncogene family
Tssr143515 17 29114500 to 29114504 4 + TSS region transcription start site region 143515
Tssr143516 17 29135409 to 29135434 25 + TSS region transcription start site region 143516
Rpl35a-ps3 17 29136972 to 29137304 332 - pseudogene ribosomal protein L35A, pseudogene 3
Tssr143517 17 29142321 to 29142323 2 + TSS region transcription start site region 143517
Tssr147184 17 29148975 to 29148989 14 - TSS region transcription start site region 147184