Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:28729494-28871623

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq5 17 25731951 to 28773124 3041173 QTL open field activity QTL 5
Mapk14 17 28691342 to 28748405 57063 + protein coding gene mitogen-activated protein kinase 14
Tssr143461 17 28746014 to 28746030 16 + TSS region transcription start site region 143461
Tssr143462 17 28747432 to 28747457 25 + TSS region transcription start site region 143462
Tssr143463 17 28747601 to 28747613 12 + TSS region transcription start site region 143463
Cpgi8897 17 28769053 to 28770306 1253 CpG island CpG island 8897
Mapk13 17 28769315 to 28778704 9389 + protein coding gene mitogen-activated protein kinase 13
Tssr143464 17 28769327 to 28769376 49 + TSS region transcription start site region 143464
Tssr143465 17 28769382 to 28769385 3 + TSS region transcription start site region 143465
Tssr143466 17 28769741 to 28769783 42 + TSS region transcription start site region 143466
Tssr147152 17 28770232 to 28770255 23 - TSS region transcription start site region 147152
Tssr147153 17 28770270 to 28770280 10 - TSS region transcription start site region 147153
Tssr143467 17 28786060 to 28786064 4 + TSS region transcription start site region 143467
Gm49864 17 28799494 to 28801623 2129 - bidirectional promoter lncRNA gene predicted gene, 49864
Cpgi8898 17 28800449 to 28802108 1659 CpG island CpG island 8898
Tssr143468 17 28800753 to 28800785 32 + TSS region transcription start site region 143468
Brpf3 17 28800763 to 28838789 38026 + protein coding gene bromodomain and PHD finger containing, 3
Tssr143469 17 28801091 to 28801145 54 + TSS region transcription start site region 143469
Tssr143470 17 28801150 to 28801173 23 + TSS region transcription start site region 143470
Tssr147154 17 28801586 to 28801600 14 - TSS region transcription start site region 147154
Tssr147155 17 28801603 to 28801621 18 - TSS region transcription start site region 147155
Tssr143471 17 28801771 to 28801822 51 + TSS region transcription start site region 143471
Tssr143472 17 28817678 to 28817692 14 + TSS region transcription start site region 143472
Tssr143473 17 28817703 to 28817721 18 + TSS region transcription start site region 143473
Tssr143474 17 28817735 to 28817749 14 + TSS region transcription start site region 143474
Gm35883 17 28822143 to 28822757 614 - antisense lncRNA gene predicted gene, 35883
Tssr143475 17 28823572 to 28823602 30 + TSS region transcription start site region 143475
Tssr143476 17 28823609 to 28823659 50 + TSS region transcription start site region 143476
Tssr143477 17 28823666 to 28823707 41 + TSS region transcription start site region 143477
Tssr143478 17 28847976 to 28847980 4 + TSS region transcription start site region 143478
Pnpla1os 17 28852055 to 28859508 7453 - antisense lncRNA gene patatin-like phospholipase domain containing 1, opposite strand
D17Jcs60 17 28852785 to 28852988 203 DNA segment DNA segment, Chr 17, John C. Schimenti 60
Cpgi8899 17 28858299 to 28858536 237 CpG island CpG island 8899
Pnpla1 17 28858411 to 28890309 31898 + protein coding gene patatin-like phospholipase domain containing 1
Tssr143479 17 28858466 to 28858499 33 + TSS region transcription start site region 143479
Tssr143480 17 28858511 to 28858553 42 + TSS region transcription start site region 143480
Tssr143481 17 28858565 to 28858573 8 + TSS region transcription start site region 143481
Tssr5057 17 28864746 to 28864747 1 + TSS region transcription start site region 5057