Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:28359800-30869844

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548 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq5 17 25731951 to 28773124 3041173 QTL open field activity QTL 5
Hst4 17 26286363 to 29495465 3209102 heritable phenotypic marker hybrid sterility 4
Cfq12 17 26609807 to 30445981 3836174 QTL conditioned fear QTL 12
Tulp1 17 28351515 to 28365143 13628 - protein coding gene tubby like protein 1
Tssr147109 17 28361778 to 28361792 14 - TSS region transcription start site region 147109
Cpgi8880 17 28362646 to 28362879 233 CpG island CpG island 8880
Cpgi8881 17 28363182 to 28363384 202 CpG island CpG island 8881
Cpgi8882 17 28364137 to 28364667 530 CpG island CpG island 8882
Tssr147110 17 28364568 to 28364584 16 - TSS region transcription start site region 147110
Tssr147111 17 28364589 to 28364605 16 - TSS region transcription start site region 147111
Tssr147112 17 28365110 to 28365136 26 - TSS region transcription start site region 147112
Tssr147113 17 28365146 to 28365180 34 - TSS region transcription start site region 147113
Tssr147114 17 28365206 to 28365224 18 - TSS region transcription start site region 147114
Cpgi8883 17 28368603 to 28368817 214 CpG island CpG island 8883
Cpgi8884 17 28375582 to 28375857 275 CpG island CpG island 8884
Cpgi8885 17 28386277 to 28386735 458 CpG island CpG island 8885
Cpgi8886 17 28391761 to 28392002 241 CpG island CpG island 8886
Fkbp5 17 28398753 to 28486149 87396 - protein coding gene FK506 binding protein 5
Tssr143432 17 28412475 to 28412477 2 + TSS region transcription start site region 143432
6030422H21Rik 17 28420071 to 28424390 4319 unclassified gene RIKEN cDNA 6030422H21 gene
Gm49838 17 28424723 to 28426430 1707 - sense intronic lncRNA gene predicted gene, 49838
Tssr147115 17 28438032 to 28438047 15 - TSS region transcription start site region 147115
Tssr147116 17 28438050 to 28438061 11 - TSS region transcription start site region 147116
Tssr147117 17 28441374 to 28441387 13 - TSS region transcription start site region 147117
Tssr147118 17 28441689 to 28441706 17 - TSS region transcription start site region 147118
Tssr147119 17 28441718 to 28441732 14 - TSS region transcription start site region 147119
Gm22146 17 28446599 to 28455602 9003 + antisense lncRNA gene predicted gene, 22146
Gm49799 17 28446861 to 28447148 287 + unclassified non-coding RNA gene predicted gene, 49799
Tssr147120 17 28452029 to 28452034 5 - TSS region transcription start site region 147120
Tssr147121 17 28455648 to 28455651 3 - TSS region transcription start site region 147121
Gm49839 17 28457484 to 28461095 3611 - unclassified gene predicted gene, 49839
Tssr147122 17 28467272 to 28467276 4 - TSS region transcription start site region 147122
Tssr147123 17 28484869 to 28484872 3 - TSS region transcription start site region 147123
Cpgi8887 17 28484898 to 28486718 1820 CpG island CpG island 8887
Tssr147124 17 28486082 to 28486099 17 - TSS region transcription start site region 147124
Tssr147125 17 28486108 to 28486149 41 - TSS region transcription start site region 147125
Tssr143433 17 28505740 to 28505752 12 + TSS region transcription start site region 143433
Tssr147126 17 28507398 to 28507449 51 - TSS region transcription start site region 147126
Tssr147127 17 28507474 to 28507489 15 - TSS region transcription start site region 147127
Tssr147128 17 28507514 to 28507529 15 - TSS region transcription start site region 147128
Tssr147129 17 28507536 to 28507557 21 - TSS region transcription start site region 147129
Tssr147130 17 28510041 to 28510050 9 - TSS region transcription start site region 147130
Tssr147131 17 28512029 to 28512033 4 - TSS region transcription start site region 147131
Tssr5055 17 28513971 to 28514009 38 + TSS region transcription start site region 5055
Tssr147132 17 28515533 to 28515538 5 - TSS region transcription start site region 147132
Tssr147133 17 28517491 to 28517504 13 - TSS region transcription start site region 147133
Tssr147134 17 28517509 to 28517558 49 - TSS region transcription start site region 147134
Cpgi8888 17 28517729 to 28518553 824 CpG island CpG island 8888
Gm49861 17 28520008 to 28520250 242 + pseudogene predicted gene, 49861
Gm20109 17 28522381 to 28523148 767 - lincRNA gene predicted gene, 20109
Cpgi8889 17 28522585 to 28523845 1260 CpG island CpG island 8889
E230001N04Rik 17 28522720 to 28525398 2678 + lincRNA gene RIKEN cDNA E230001N04 gene
Tssr143434 17 28522722 to 28522761 39 + TSS region transcription start site region 143434
Tssr143435 17 28523275 to 28523314 39 + TSS region transcription start site region 143435
Tssr143436 17 28523318 to 28523327 9 + TSS region transcription start site region 143436
Gm25195 17 28526332 to 28526457 125 + miRNA gene predicted gene, 25195
Gm41506 17 28528743 to 28530734 1991 - bidirectional promoter lncRNA gene predicted gene, 41506
Tssr143437 17 28530828 to 28530833 5 + TSS region transcription start site region 143437
Tssr143438 17 28530834 to 28530879 45 + TSS region transcription start site region 143438
Armc12 17 28530861 to 28538975 8114 + protein coding gene armadillo repeat containing 12
Tssr143439 17 28532171 to 28532201 30 + TSS region transcription start site region 143439
Cpgi8890 17 28533479 to 28533671 192 CpG island CpG island 8890
D17Mit166 17 28536830 to 28536937 107 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 166
Cpgi8891 17 28538631 to 28538982 351 CpG island CpG island 8891
Tssr143440 17 28549471 to 28549482 11 + TSS region transcription start site region 143440
Tssr143441 17 28549486 to 28549502 16 + TSS region transcription start site region 143441
Clpsl2 17 28549487 to 28552618 3131 + protein coding gene colipase-like 2
Tssr147135 17 28552530 to 28552533 3 - TSS region transcription start site region 147135
Clps 17 28558210 to 28560766 2556 - protein coding gene colipase, pancreatic
Tssr143442 17 28558212 to 28558219 7 + TSS region transcription start site region 143442
Tssr5056 17 28558233 to 28558238 5 - TSS region transcription start site region 5056
Tssr147136 17 28558262 to 28558324 62 - TSS region transcription start site region 147136
Tssr143443 17 28558264 to 28558279 15 + TSS region transcription start site region 143443
Tssr143444 17 28558286 to 28558326 40 + TSS region transcription start site region 143444
Tssr147137 17 28558329 to 28558393 64 - TSS region transcription start site region 147137
Tssr143445 17 28558339 to 28558359 20 + TSS region transcription start site region 143445
Tssr147138 17 28558420 to 28558452 32 - TSS region transcription start site region 147138
Mir6969 17 28558441 to 28558501 60 - miRNA gene microRNA 6969
Tssr143446 17 28558760 to 28558793 33 + TSS region transcription start site region 143446
Tssr147139 17 28558798 to 28558881 83 - TSS region transcription start site region 147139
Tssr143447 17 28558811 to 28558825 14 + TSS region transcription start site region 143447
Tssr147140 17 28558885 to 28558892 7 - TSS region transcription start site region 147140
Tssr147141 17 28560704 to 28560718 14 - TSS region transcription start site region 147141
Cpgi8892 17 28575293 to 28576219 926 CpG island CpG island 8892
Lhfpl5 17 28575369 to 28583593 8224 + protein coding gene lipoma HMGIC fusion partner-like 5
Tssr143448 17 28575725 to 28575743 18 + TSS region transcription start site region 143448
Tssr143449 17 28575752 to 28575772 20 + TSS region transcription start site region 143449
Tssr143450 17 28575781 to 28575803 22 + TSS region transcription start site region 143450
Srpk1 17 28589590 to 28622647 33057 - protein coding gene serine/arginine-rich protein specific kinase 1
Tssr147142 17 28603559 to 28603561 2 - TSS region transcription start site region 147142
Cpgi8893 17 28621349 to 28622964 1615 CpG island CpG island 8893
Tssr147143 17 28622066 to 28622081 15 - TSS region transcription start site region 147143
Tssr147144 17 28622085 to 28622102 17 - TSS region transcription start site region 147144
Tssr147145 17 28622419 to 28622473 54 - TSS region transcription start site region 147145
Tssr147146 17 28622479 to 28622502 23 - TSS region transcription start site region 147146
Tssr143451 17 28627466 to 28627467 1 + TSS region transcription start site region 143451
Slc26a8 17 28637783 to 28690233 52450 - protein coding gene solute carrier family 26, member 8
D17Mit29 17 28666997 to 28667145 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 29
Hbnr2 17 28666997 to 28667145 148 QTL Heligmosomoides bakeri nematode resistance 2
Cpgi8894 17 28684655 to 28684829 174 CpG island CpG island 8894
Cpgi8895 17 28689369 to 28690020 651 CpG island CpG island 8895
Tssr147147 17 28689758 to 28689764 6 - TSS region transcription start site region 147147
Tssr147148 17 28689768 to 28689778 10 - TSS region transcription start site region 147148
Tssr147149 17 28689783 to 28689831 48 - TSS region transcription start site region 147149
Cpgi8896 17 28690753 to 28692623 1870 CpG island CpG island 8896
Tssr147150 17 28691145 to 28691182 37 - TSS region transcription start site region 147150
Tssr147151 17 28691219 to 28691234 15 - TSS region transcription start site region 147151
Tssr143452 17 28691328 to 28691333 5 + TSS region transcription start site region 143452
Mapk14 17 28691342 to 28748405 57063 + protein coding gene mitogen-activated protein kinase 14
Tssr143453 17 28691388 to 28691399 11 + TSS region transcription start site region 143453
Tssr143454 17 28691419 to 28691445 26 + TSS region transcription start site region 143454
Tssr143455 17 28691462 to 28691471 9 + TSS region transcription start site region 143455
Tssr143456 17 28691790 to 28691825 35 + TSS region transcription start site region 143456
Tssr143457 17 28692270 to 28692300 30 + TSS region transcription start site region 143457
Tssr143458 17 28692592 to 28692616 24 + TSS region transcription start site region 143458
Tssr143459 17 28692618 to 28692651 33 + TSS region transcription start site region 143459
5830454J16Rik 17 28695101 to 28695739 638 unclassified gene RIKEN cDNA 5830454J16 gene
Tssr143460 17 28699614 to 28699618 4 + TSS region transcription start site region 143460
Gm4356 17 28726226 to 28726704 478 + pseudogene predicted gene 4356
Tssr143461 17 28746014 to 28746030 16 + TSS region transcription start site region 143461
Tssr143462 17 28747432 to 28747457 25 + TSS region transcription start site region 143462
Tssr143463 17 28747601 to 28747613 12 + TSS region transcription start site region 143463
Cpgi8897 17 28769053 to 28770306 1253 CpG island CpG island 8897
Mapk13 17 28769315 to 28778704 9389 + protein coding gene mitogen-activated protein kinase 13
Tssr143464 17 28769327 to 28769376 49 + TSS region transcription start site region 143464
Tssr143465 17 28769382 to 28769385 3 + TSS region transcription start site region 143465
Tssr143466 17 28769741 to 28769783 42 + TSS region transcription start site region 143466
Tssr147152 17 28770232 to 28770255 23 - TSS region transcription start site region 147152
Tssr147153 17 28770270 to 28770280 10 - TSS region transcription start site region 147153
Tssr143467 17 28786060 to 28786064 4 + TSS region transcription start site region 143467
Gm49864 17 28799494 to 28801623 2129 - bidirectional promoter lncRNA gene predicted gene, 49864
Cpgi8898 17 28800449 to 28802108 1659 CpG island CpG island 8898
Tssr143468 17 28800753 to 28800785 32 + TSS region transcription start site region 143468
Brpf3 17 28800763 to 28838789 38026 + protein coding gene bromodomain and PHD finger containing, 3
Tssr143469 17 28801091 to 28801145 54 + TSS region transcription start site region 143469
Tssr143470 17 28801150 to 28801173 23 + TSS region transcription start site region 143470
Tssr147154 17 28801586 to 28801600 14 - TSS region transcription start site region 147154
Tssr147155 17 28801603 to 28801621 18 - TSS region transcription start site region 147155
Tssr143471 17 28801771 to 28801822 51 + TSS region transcription start site region 143471
Tssr143472 17 28817678 to 28817692 14 + TSS region transcription start site region 143472
Tssr143473 17 28817703 to 28817721 18 + TSS region transcription start site region 143473
Tssr143474 17 28817735 to 28817749 14 + TSS region transcription start site region 143474
Gm35883 17 28822143 to 28822757 614 - antisense lncRNA gene predicted gene, 35883
Tssr143475 17 28823572 to 28823602 30 + TSS region transcription start site region 143475
Tssr143476 17 28823609 to 28823659 50 + TSS region transcription start site region 143476
Tssr143477 17 28823666 to 28823707 41 + TSS region transcription start site region 143477
Tssr143478 17 28847976 to 28847980 4 + TSS region transcription start site region 143478
Pnpla1os 17 28852055 to 28859508 7453 - antisense lncRNA gene patatin-like phospholipase domain containing 1, opposite strand
D17Jcs60 17 28852785 to 28852988 203 DNA segment DNA segment, Chr 17, John C. Schimenti 60
Cpgi8899 17 28858299 to 28858536 237 CpG island CpG island 8899
Pnpla1 17 28858411 to 28890309 31898 + protein coding gene patatin-like phospholipase domain containing 1
Tssr143479 17 28858466 to 28858499 33 + TSS region transcription start site region 143479
Tssr143480 17 28858511 to 28858553 42 + TSS region transcription start site region 143480
Tssr143481 17 28858565 to 28858573 8 + TSS region transcription start site region 143481
Tssr5057 17 28864746 to 28864747 1 + TSS region transcription start site region 5057
Tssr143482 17 28872603 to 28872608 5 + TSS region transcription start site region 143482
Tssr143483 17 28872618 to 28872627 9 + TSS region transcription start site region 143483
Cpgi8900 17 28876887 to 28877159 272 CpG island CpG island 8900
Cpgi8901 17 28879898 to 28880425 527 CpG island CpG island 8901
Tssr143484 17 28895745 to 28895754 9 + TSS region transcription start site region 143484
4930539E08Rik 17 28896392 to 28915324 18932 - protein coding gene RIKEN cDNA 4930539E08 gene
Cpgi8902 17 28899307 to 28899940 633 CpG island CpG island 8902
Tssr147156 17 28899704 to 28899716 12 - TSS region transcription start site region 147156
Tssr143485 17 28905229 to 28905248 19 + TSS region transcription start site region 143485
1700030A11Rik 17 28905265 to 28906771 1506 + antisense lncRNA gene RIKEN cDNA 1700030A11 gene
Cpgi8903 17 28909278 to 28909814 536 CpG island CpG island 8903
Tssr147157 17 28909382 to 28909407 25 - TSS region transcription start site region 147157
Tssr147158 17 28915314 to 28915330 16 - TSS region transcription start site region 147158
Gm16191 17 28925463 to 28937125 11662 + antisense lncRNA gene predicted gene 16191
Pxt1 17 28933986 to 28942262 8276 - protein coding gene peroxisomal, testis specific 1
Tssr147159 17 28942224 to 28942254 30 - TSS region transcription start site region 147159
Tssr147160 17 28942255 to 28942270 15 - TSS region transcription start site region 147160
Tssr147161 17 28943835 to 28943840 5 - TSS region transcription start site region 147161
Gm49868 17 28946571 to 28947195 624 - pseudogene predicted gene, 49868
1700063J08Rik 17 28951855 to 28952408 553 - bidirectional promoter lncRNA gene RIKEN cDNA 1700063J08 gene
Tssr143486 17 28951965 to 28951978 13 + TSS region transcription start site region 143486
Cpgi8904 17 28952110 to 28952833 723 CpG island CpG island 8904
Tssr143487 17 28952412 to 28952423 11 + TSS region transcription start site region 143487
Tssr143488 17 28952425 to 28952532 107 + TSS region transcription start site region 143488
Kctd20 17 28952448 to 28969549 17101 + protein coding gene potassium channel tetramerisation domain containing 20
Tssr5058 17 28952681 to 28952697 16 + TSS region transcription start site region 5058
D17Mit248 17 28956504 to 28956604 100 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 248
D17Dcr2 17 28956760 to 28956881 121 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 2
Stk38 17 28970880 to 29007995 37115 - protein coding gene serine/threonine kinase 38
Tssr143489 17 28970882 to 28970890 8 + TSS region transcription start site region 143489
Tssr147162 17 28981301 to 28981345 44 - TSS region transcription start site region 147162
Gm23887 17 28989977 to 28990148 171 - snRNA gene predicted gene, 23887
Cpgi8905 17 29007112 to 29008269 1157 CpG island CpG island 8905
Tssr147163 17 29007805 to 29007830 25 - TSS region transcription start site region 147163
Tssr147164 17 29007833 to 29007856 23 - TSS region transcription start site region 147164
Tssr147165 17 29007861 to 29007872 11 - TSS region transcription start site region 147165
Tssr147166 17 29007925 to 29007962 37 - TSS region transcription start site region 147166
Tssr147167 17 29007991 to 29008002 11 - TSS region transcription start site region 147167
Tssr5059 17 29008098 to 29008128 30 - TSS region transcription start site region 5059
Gm16196 17 29014642 to 29032568 17926 - bidirectional promoter lncRNA gene predicted gene 16196
Gm16195 17 29021293 to 29022402 1109 + lincRNA gene predicted gene 16195
Cpgi8906 17 29031814 to 29033024 1210 CpG island CpG island 8906
Tssr147168 17 29032396 to 29032412 16 - TSS region transcription start site region 147168
Srsf3 17 29032660 to 29043372 10712 + protein coding gene serine/arginine-rich splicing factor 3
Tssr143490 17 29032664 to 29032681 17 + TSS region transcription start site region 143490