Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:28150828-28910833

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242 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq5 17 25731951 to 28773124 3041173 QTL open field activity QTL 5
Scube3 17 28142141 to 28174854 32713 + protein coding gene signal peptide, CUB domain, EGF-like 3
C230013L11Rik 17 28174657 to 28177682 3025 - bidirectional promoter lncRNA gene RIKEN cDNA C230013L11 gene
Cpgi8870 17 28176551 to 28177952 1401 CpG island CpG island 8870
Zfp523 17 28177129 to 28205886 28757 + protein coding gene zinc finger protein 523
Tssr143392 17 28177130 to 28177214 84 + TSS region transcription start site region 143392
Tssr143393 17 28177396 to 28177449 53 + TSS region transcription start site region 143393
Tssr147097 17 28177641 to 28177682 41 - TSS region transcription start site region 147097
Cpgi8871 17 28207676 to 28207997 321 CpG island CpG island 8871
Def6 17 28207778 to 28228608 20830 + protein coding gene differentially expressed in FDCP 6
Tssr143394 17 28207795 to 28207814 19 + TSS region transcription start site region 143394
Tssr143395 17 28207820 to 28207893 73 + TSS region transcription start site region 143395
Tssr143396 17 28208303 to 28208347 44 + TSS region transcription start site region 143396
D17Mit262 17 28208469 to 28208550 81 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 262
Tssr147098 17 28211547 to 28211553 6 - TSS region transcription start site region 147098
Tssr147099 17 28217724 to 28217735 11 - TSS region transcription start site region 147099
Tssr143397 17 28218213 to 28218217 4 + TSS region transcription start site region 143397
Tssr143398 17 28221746 to 28221748 2 + TSS region transcription start site region 143398
Tssr143399 17 28222213 to 28222218 5 + TSS region transcription start site region 143399
Gm49874 17 28223104 to 28224167 1063 - antisense lncRNA gene predicted gene, 49874
Cpgi8872 17 28223491 to 28224272 781 CpG island CpG island 8872
Tssr147100 17 28224152 to 28224167 15 - TSS region transcription start site region 147100
Cpgi8873 17 28225790 to 28226450 660 CpG island CpG island 8873
Tssr143400 17 28227067 to 28227071 4 + TSS region transcription start site region 143400
Cpgi8874 17 28232331 to 28233299 968 CpG island CpG island 8874
Tssr147101 17 28232539 to 28232562 23 - TSS region transcription start site region 147101
Tssr143401 17 28232723 to 28232789 66 + TSS region transcription start site region 143401
Ppard 17 28232754 to 28301469 68715 + protein coding gene peroxisome proliferator activator receptor delta
Tssr143402 17 28232794 to 28232829 35 + TSS region transcription start site region 143402
Tssr143403 17 28236925 to 28236968 43 + TSS region transcription start site region 143403
Tssr143404 17 28239123 to 28239124 1 + TSS region transcription start site region 143404
Tssr143405 17 28252538 to 28252581 43 + TSS region transcription start site region 143405
Tssr143406 17 28262116 to 28262126 10 + TSS region transcription start site region 143406
Tssr143407 17 28271687 to 28271737 50 + TSS region transcription start site region 143407
1810013A23Rik 17 28271708 to 28273163 1455 + lncRNA gene RIKEN cDNA 1810013A23 gene
Tssr143408 17 28271957 to 28271968 11 + TSS region transcription start site region 143408
Tssr143409 17 28272114 to 28272131 17 + TSS region transcription start site region 143409
Tssr143410 17 28272172 to 28272188 16 + TSS region transcription start site region 143410
Tssr143411 17 28272191 to 28272205 14 + TSS region transcription start site region 143411
9330112F22Rik 17 28276001 to 28285013 9012 unclassified gene RIKEN cDNA 9330112F22 gene
Tssr143412 17 28280231 to 28280254 23 + TSS region transcription start site region 143412
Tssr143413 17 28280282 to 28280291 9 + TSS region transcription start site region 143413
D17Aus7 17 28293269 to 28293448 179 DNA segment DNA segment, Chr 17, Austin 7
Tssr143414 17 28298338 to 28298361 23 + TSS region transcription start site region 143414
Tssr143415 17 28299658 to 28299669 11 + TSS region transcription start site region 143415
Tssr143416 17 28300049 to 28300067 18 + TSS region transcription start site region 143416
Tssr143417 17 28300218 to 28300232 14 + TSS region transcription start site region 143417
Cpgi8875 17 28313222 to 28314114 892 CpG island CpG island 8875
Tssr143418 17 28313513 to 28313580 67 + TSS region transcription start site region 143418
Fance 17 28313530 to 28326574 13044 + protein coding gene Fanconi anemia, complementation group E
Gm49886 17 28318186 to 28319602 1416 - antisense lncRNA gene predicted gene, 49886
Gm49889 17 28326953 to 28328521 1568 - bidirectional promoter lncRNA gene predicted gene, 49889
Cpgi8876 17 28327940 to 28329382 1442 CpG island CpG island 8876
Tssr143419 17 28328169 to 28328179 10 + TSS region transcription start site region 143419
Rpl10a 17 28328471 to 28331033 2562 + protein coding gene ribosomal protein L10A
Tssr143420 17 28328549 to 28328570 21 + TSS region transcription start site region 143420
Tssr143421 17 28328576 to 28328591 15 + TSS region transcription start site region 143421
Tssr143422 17 28328604 to 28328615 11 + TSS region transcription start site region 143422
Tssr143423 17 28328616 to 28328621 5 + TSS region transcription start site region 143423
Tssr143424 17 28328780 to 28328803 23 + TSS region transcription start site region 143424
Tssr143425 17 28329209 to 28329244 35 + TSS region transcription start site region 143425
Tssr143426 17 28329317 to 28329366 49 + TSS region transcription start site region 143426
Tssr143427 17 28329369 to 28329387 18 + TSS region transcription start site region 143427
Tssr143428 17 28329442 to 28329486 44 + TSS region transcription start site region 143428
Tssr143429 17 28329622 to 28329641 19 + TSS region transcription start site region 143429
Tssr143430 17 28330493 to 28330497 4 + TSS region transcription start site region 143430
Tead3 17 28331671 to 28350805 19134 - protein coding gene TEA domain family member 3
Cpgi8877 17 28332853 to 28333294 441 CpG island CpG island 8877
Tssr143431 17 28334944 to 28334948 4 + TSS region transcription start site region 143431
Cpgi8878 17 28341129 to 28341559 430 CpG island CpG island 8878
Cpgi8879 17 28349655 to 28352107 2452 CpG island CpG island 8879
Tssr147102 17 28350658 to 28350681 23 - TSS region transcription start site region 147102
Tssr147103 17 28350747 to 28350820 73 - TSS region transcription start site region 147103
Tulp1 17 28351515 to 28365143 13628 - protein coding gene tubby like protein 1
Tssr147104 17 28356865 to 28356866 1 - TSS region transcription start site region 147104
Tssr147105 17 28357451 to 28357452 1 - TSS region transcription start site region 147105
Tssr147106 17 28358694 to 28358698 4 - TSS region transcription start site region 147106
Tssr147107 17 28358704 to 28358728 24 - TSS region transcription start site region 147107
Tssr147108 17 28358731 to 28358748 17 - TSS region transcription start site region 147108
Tssr147109 17 28361778 to 28361792 14 - TSS region transcription start site region 147109
Cpgi8880 17 28362646 to 28362879 233 CpG island CpG island 8880
Cpgi8881 17 28363182 to 28363384 202 CpG island CpG island 8881
Cpgi8882 17 28364137 to 28364667 530 CpG island CpG island 8882
Tssr147110 17 28364568 to 28364584 16 - TSS region transcription start site region 147110
Tssr147111 17 28364589 to 28364605 16 - TSS region transcription start site region 147111
Tssr147112 17 28365110 to 28365136 26 - TSS region transcription start site region 147112
Tssr147113 17 28365146 to 28365180 34 - TSS region transcription start site region 147113
Tssr147114 17 28365206 to 28365224 18 - TSS region transcription start site region 147114
Cpgi8883 17 28368603 to 28368817 214 CpG island CpG island 8883
Cpgi8884 17 28375582 to 28375857 275 CpG island CpG island 8884
Cpgi8885 17 28386277 to 28386735 458 CpG island CpG island 8885
Cpgi8886 17 28391761 to 28392002 241 CpG island CpG island 8886
Fkbp5 17 28398753 to 28486149 87396 - protein coding gene FK506 binding protein 5
Tssr143432 17 28412475 to 28412477 2 + TSS region transcription start site region 143432
6030422H21Rik 17 28420071 to 28424390 4319 unclassified gene RIKEN cDNA 6030422H21 gene
Gm49838 17 28424723 to 28426430 1707 - sense intronic lncRNA gene predicted gene, 49838
Tssr147115 17 28438032 to 28438047 15 - TSS region transcription start site region 147115
Tssr147116 17 28438050 to 28438061 11 - TSS region transcription start site region 147116
Tssr147117 17 28441374 to 28441387 13 - TSS region transcription start site region 147117
Tssr147118 17 28441689 to 28441706 17 - TSS region transcription start site region 147118
Tssr147119 17 28441718 to 28441732 14 - TSS region transcription start site region 147119
Gm22146 17 28446599 to 28455602 9003 + antisense lncRNA gene predicted gene, 22146
Gm49799 17 28446861 to 28447148 287 + unclassified non-coding RNA gene predicted gene, 49799
Tssr147120 17 28452029 to 28452034 5 - TSS region transcription start site region 147120
Tssr147121 17 28455648 to 28455651 3 - TSS region transcription start site region 147121
Gm49839 17 28457484 to 28461095 3611 - unclassified gene predicted gene, 49839
Tssr147122 17 28467272 to 28467276 4 - TSS region transcription start site region 147122
Tssr147123 17 28484869 to 28484872 3 - TSS region transcription start site region 147123
Cpgi8887 17 28484898 to 28486718 1820 CpG island CpG island 8887
Tssr147124 17 28486082 to 28486099 17 - TSS region transcription start site region 147124
Tssr147125 17 28486108 to 28486149 41 - TSS region transcription start site region 147125
Tssr143433 17 28505740 to 28505752 12 + TSS region transcription start site region 143433
Tssr147126 17 28507398 to 28507449 51 - TSS region transcription start site region 147126
Tssr147127 17 28507474 to 28507489 15 - TSS region transcription start site region 147127
Tssr147128 17 28507514 to 28507529 15 - TSS region transcription start site region 147128
Tssr147129 17 28507536 to 28507557 21 - TSS region transcription start site region 147129
Tssr147130 17 28510041 to 28510050 9 - TSS region transcription start site region 147130
Tssr147131 17 28512029 to 28512033 4 - TSS region transcription start site region 147131
Tssr5055 17 28513971 to 28514009 38 + TSS region transcription start site region 5055
Tssr147132 17 28515533 to 28515538 5 - TSS region transcription start site region 147132
Tssr147133 17 28517491 to 28517504 13 - TSS region transcription start site region 147133
Tssr147134 17 28517509 to 28517558 49 - TSS region transcription start site region 147134
Cpgi8888 17 28517729 to 28518553 824 CpG island CpG island 8888
Gm49861 17 28520008 to 28520250 242 + pseudogene predicted gene, 49861
Gm20109 17 28522381 to 28523148 767 - lincRNA gene predicted gene, 20109
Cpgi8889 17 28522585 to 28523845 1260 CpG island CpG island 8889
E230001N04Rik 17 28522720 to 28525398 2678 + lincRNA gene RIKEN cDNA E230001N04 gene
Tssr143434 17 28522722 to 28522761 39 + TSS region transcription start site region 143434
Tssr143435 17 28523275 to 28523314 39 + TSS region transcription start site region 143435
Tssr143436 17 28523318 to 28523327 9 + TSS region transcription start site region 143436
Gm25195 17 28526332 to 28526457 125 + miRNA gene predicted gene, 25195
Gm41506 17 28528743 to 28530734 1991 - bidirectional promoter lncRNA gene predicted gene, 41506
Tssr143437 17 28530828 to 28530833 5 + TSS region transcription start site region 143437
Tssr143438 17 28530834 to 28530879 45 + TSS region transcription start site region 143438
Armc12 17 28530861 to 28538975 8114 + protein coding gene armadillo repeat containing 12
Tssr143439 17 28532171 to 28532201 30 + TSS region transcription start site region 143439
Cpgi8890 17 28533479 to 28533671 192 CpG island CpG island 8890
D17Mit166 17 28536830 to 28536937 107 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 166
Cpgi8891 17 28538631 to 28538982 351 CpG island CpG island 8891
Tssr143440 17 28549471 to 28549482 11 + TSS region transcription start site region 143440
Tssr143441 17 28549486 to 28549502 16 + TSS region transcription start site region 143441
Clpsl2 17 28549487 to 28552618 3131 + protein coding gene colipase-like 2
Tssr147135 17 28552530 to 28552533 3 - TSS region transcription start site region 147135
Clps 17 28558210 to 28560766 2556 - protein coding gene colipase, pancreatic
Tssr143442 17 28558212 to 28558219 7 + TSS region transcription start site region 143442
Tssr5056 17 28558233 to 28558238 5 - TSS region transcription start site region 5056
Tssr147136 17 28558262 to 28558324 62 - TSS region transcription start site region 147136
Tssr143443 17 28558264 to 28558279 15 + TSS region transcription start site region 143443
Tssr143444 17 28558286 to 28558326 40 + TSS region transcription start site region 143444
Tssr147137 17 28558329 to 28558393 64 - TSS region transcription start site region 147137
Tssr143445 17 28558339 to 28558359 20 + TSS region transcription start site region 143445
Tssr147138 17 28558420 to 28558452 32 - TSS region transcription start site region 147138
Mir6969 17 28558441 to 28558501 60 - miRNA gene microRNA 6969
Tssr143446 17 28558760 to 28558793 33 + TSS region transcription start site region 143446
Tssr147139 17 28558798 to 28558881 83 - TSS region transcription start site region 147139
Tssr143447 17 28558811 to 28558825 14 + TSS region transcription start site region 143447
Tssr147140 17 28558885 to 28558892 7 - TSS region transcription start site region 147140
Tssr147141 17 28560704 to 28560718 14 - TSS region transcription start site region 147141
Cpgi8892 17 28575293 to 28576219 926 CpG island CpG island 8892
Lhfpl5 17 28575369 to 28583593 8224 + protein coding gene lipoma HMGIC fusion partner-like 5
Tssr143448 17 28575725 to 28575743 18 + TSS region transcription start site region 143448
Tssr143449 17 28575752 to 28575772 20 + TSS region transcription start site region 143449
Tssr143450 17 28575781 to 28575803 22 + TSS region transcription start site region 143450
Srpk1 17 28589590 to 28622647 33057 - protein coding gene serine/arginine-rich protein specific kinase 1
Tssr147142 17 28603559 to 28603561 2 - TSS region transcription start site region 147142
Cpgi8893 17 28621349 to 28622964 1615 CpG island CpG island 8893
Tssr147143 17 28622066 to 28622081 15 - TSS region transcription start site region 147143
Tssr147144 17 28622085 to 28622102 17 - TSS region transcription start site region 147144
Tssr147145 17 28622419 to 28622473 54 - TSS region transcription start site region 147145
Tssr147146 17 28622479 to 28622502 23 - TSS region transcription start site region 147146
Tssr143451 17 28627466 to 28627467 1 + TSS region transcription start site region 143451
Slc26a8 17 28637783 to 28690233 52450 - protein coding gene solute carrier family 26, member 8
Hbnr2 17 28666997 to 28667145 148 QTL Heligmosomoides bakeri nematode resistance 2
D17Mit29 17 28666997 to 28667145 148 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 29
Cpgi8894 17 28684655 to 28684829 174 CpG island CpG island 8894
Cpgi8895 17 28689369 to 28690020 651 CpG island CpG island 8895
Tssr147147 17 28689758 to 28689764 6 - TSS region transcription start site region 147147
Tssr147148 17 28689768 to 28689778 10 - TSS region transcription start site region 147148
Tssr147149 17 28689783 to 28689831 48 - TSS region transcription start site region 147149
Cpgi8896 17 28690753 to 28692623 1870 CpG island CpG island 8896
Tssr147150 17 28691145 to 28691182 37 - TSS region transcription start site region 147150
Tssr147151 17 28691219 to 28691234 15 - TSS region transcription start site region 147151
Tssr143452 17 28691328 to 28691333 5 + TSS region transcription start site region 143452
Mapk14 17 28691342 to 28748405 57063 + protein coding gene mitogen-activated protein kinase 14
Tssr143453 17 28691388 to 28691399 11 + TSS region transcription start site region 143453
Tssr143454 17 28691419 to 28691445 26 + TSS region transcription start site region 143454
Tssr143455 17 28691462 to 28691471 9 + TSS region transcription start site region 143455
Tssr143456 17 28691790 to 28691825 35 + TSS region transcription start site region 143456
Tssr143457 17 28692270 to 28692300 30 + TSS region transcription start site region 143457
Tssr143458 17 28692592 to 28692616 24 + TSS region transcription start site region 143458
Tssr143459 17 28692618 to 28692651 33 + TSS region transcription start site region 143459
5830454J16Rik 17 28695101 to 28695739 638 unclassified gene RIKEN cDNA 5830454J16 gene
Tssr143460 17 28699614 to 28699618 4 + TSS region transcription start site region 143460
Gm4356 17 28726226 to 28726704 478 + pseudogene predicted gene 4356
Tssr143461 17 28746014 to 28746030 16 + TSS region transcription start site region 143461
Tssr143462 17 28747432 to 28747457 25 + TSS region transcription start site region 143462
Tssr143463 17 28747601 to 28747613 12 + TSS region transcription start site region 143463
Cpgi8897 17 28769053 to 28770306 1253 CpG island CpG island 8897
Mapk13 17 28769315 to 28778704 9389 + protein coding gene mitogen-activated protein kinase 13
Tssr143464 17 28769327 to 28769376 49 + TSS region transcription start site region 143464