Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:28122130-28232214

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr143388 17 28124037 to 28124044 7 + TSS region transcription start site region 143388
D17Mit226 17 28128659 to 28128772 113 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 226
Cpgi8868 17 28133340 to 28133529 189 CpG island CpG island 8868
Gm49897 17 28139628 to 28140106 478 - unclassified gene predicted gene, 49897
Cpgi8869 17 28141247 to 28143138 1891 CpG island CpG island 8869
Scube3 17 28142141 to 28174854 32713 + protein coding gene signal peptide, CUB domain, EGF-like 3
Tssr143389 17 28142182 to 28142193 11 + TSS region transcription start site region 143389
Tssr143390 17 28142267 to 28142321 54 + TSS region transcription start site region 143390
Tssr143391 17 28147540 to 28147544 4 + TSS region transcription start site region 143391
C230013L11Rik 17 28174657 to 28177682 3025 - bidirectional promoter lncRNA gene RIKEN cDNA C230013L11 gene
Cpgi8870 17 28176551 to 28177952 1401 CpG island CpG island 8870
Zfp523 17 28177129 to 28205886 28757 + protein coding gene zinc finger protein 523
Tssr143392 17 28177130 to 28177214 84 + TSS region transcription start site region 143392
Tssr143393 17 28177396 to 28177449 53 + TSS region transcription start site region 143393
Tssr147097 17 28177641 to 28177682 41 - TSS region transcription start site region 147097
Cpgi8871 17 28207676 to 28207997 321 CpG island CpG island 8871
Def6 17 28207778 to 28228608 20830 + protein coding gene differentially expressed in FDCP 6
Tssr143394 17 28207795 to 28207814 19 + TSS region transcription start site region 143394
Tssr143395 17 28207820 to 28207893 73 + TSS region transcription start site region 143395
Tssr143396 17 28208303 to 28208347 44 + TSS region transcription start site region 143396
D17Mit262 17 28208469 to 28208550 81 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 262
Tssr147098 17 28211547 to 28211553 6 - TSS region transcription start site region 147098
Tssr147099 17 28217724 to 28217735 11 - TSS region transcription start site region 147099
Tssr143397 17 28218213 to 28218217 4 + TSS region transcription start site region 143397
Tssr143398 17 28221746 to 28221748 2 + TSS region transcription start site region 143398
Tssr143399 17 28222213 to 28222218 5 + TSS region transcription start site region 143399
Gm49874 17 28223104 to 28224167 1063 - antisense lncRNA gene predicted gene, 49874
Cpgi8872 17 28223491 to 28224272 781 CpG island CpG island 8872
Tssr147100 17 28224152 to 28224167 15 - TSS region transcription start site region 147100
Cpgi8873 17 28225790 to 28226450 660 CpG island CpG island 8873
Tssr143400 17 28227067 to 28227071 4 + TSS region transcription start site region 143400