Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:28069628-28210106

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcp11 17 28066745 to 28080639 13894 - protein coding gene t-complex protein 11
Tssr143385 17 28069617 to 28069642 25 + TSS region transcription start site region 143385
Tssr147086 17 28074692 to 28074712 20 - TSS region transcription start site region 147086
4930526A20Rik 17 28075110 to 28076402 1292 - pseudogene RIKEN cDNA 4930526A20 gene
Cpgi8865 17 28079637 to 28080959 1322 CpG island CpG island 8865
Tssr147087 17 28079747 to 28079775 28 - TSS region transcription start site region 147087
Tssr147088 17 28079799 to 28079809 10 - TSS region transcription start site region 147088
Tssr143386 17 28079880 to 28079897 17 + TSS region transcription start site region 143386
Tssr147089 17 28080060 to 28080100 40 - TSS region transcription start site region 147089
Tssr147090 17 28080115 to 28080139 24 - TSS region transcription start site region 147090
Tssr147091 17 28080144 to 28080170 26 - TSS region transcription start site region 147091
Tssr147092 17 28080187 to 28080195 8 - TSS region transcription start site region 147092
Tssr147093 17 28080272 to 28080279 7 - TSS region transcription start site region 147093
Tssr147094 17 28080305 to 28080316 11 - TSS region transcription start site region 147094
Tssr147095 17 28080569 to 28080589 20 - TSS region transcription start site region 147095
Tssr147096 17 28080595 to 28080639 44 - TSS region transcription start site region 147096
Cpgi8866 17 28084943 to 28085131 188 CpG island CpG island 8866
Tssr143387 17 28098016 to 28098018 2 + TSS region transcription start site region 143387
Cpgi8867 17 28105399 to 28105819 420 CpG island CpG island 8867
Tssr143388 17 28124037 to 28124044 7 + TSS region transcription start site region 143388
D17Mit226 17 28128659 to 28128772 113 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 226
Cpgi8868 17 28133340 to 28133529 189 CpG island CpG island 8868
Gm49897 17 28139628 to 28140106 478 - unclassified gene predicted gene, 49897
Cpgi8869 17 28141247 to 28143138 1891 CpG island CpG island 8869
Scube3 17 28142141 to 28174854 32713 + protein coding gene signal peptide, CUB domain, EGF-like 3
Tssr143389 17 28142182 to 28142193 11 + TSS region transcription start site region 143389
Tssr143390 17 28142267 to 28142321 54 + TSS region transcription start site region 143390
Tssr143391 17 28147540 to 28147544 4 + TSS region transcription start site region 143391
C230013L11Rik 17 28174657 to 28177682 3025 - bidirectional promoter lncRNA gene RIKEN cDNA C230013L11 gene
Cpgi8870 17 28176551 to 28177952 1401 CpG island CpG island 8870
Zfp523 17 28177129 to 28205886 28757 + protein coding gene zinc finger protein 523
Tssr143392 17 28177130 to 28177214 84 + TSS region transcription start site region 143392
Tssr143393 17 28177396 to 28177449 53 + TSS region transcription start site region 143393
Tssr147097 17 28177641 to 28177682 41 - TSS region transcription start site region 147097
Cpgi8871 17 28207676 to 28207997 321 CpG island CpG island 8871
Def6 17 28207778 to 28228608 20830 + protein coding gene differentially expressed in FDCP 6
Tssr143394 17 28207795 to 28207814 19 + TSS region transcription start site region 143394
Tssr143395 17 28207820 to 28207893 73 + TSS region transcription start site region 143395
Tssr143396 17 28208303 to 28208347 44 + TSS region transcription start site region 143396
D17Mit262 17 28208469 to 28208550 81 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 262