Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:27841116-28131453

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snrpc 17 27840087 to 27851968 11881 + protein coding gene U1 small nuclear ribonucleoprotein C
Tssr143366 17 27847969 to 27847983 14 + TSS region transcription start site region 143366
Cpgi8858 17 27856230 to 27857397 1167 CpG island CpG island 8858
Tssr143367 17 27856443 to 27856511 68 + TSS region transcription start site region 143367
Uhrf1bp1 17 27856507 to 27900040 43533 + protein coding gene UHRF1 (ICBP90) binding protein 1
Tssr143368 17 27856520 to 27856544 24 + TSS region transcription start site region 143368
Tssr143369 17 27857240 to 27857247 7 + TSS region transcription start site region 143369
Gm49803 17 27868481 to 27868978 497 - pseudogene predicted gene, 49803
Taf11 17 27901128 to 27909242 8114 - protein coding gene TATA-box binding protein associated factor 11
Tssr147074 17 27904631 to 27904637 6 - TSS region transcription start site region 147074
Cpgi8859 17 27907328 to 27908159 831 CpG island CpG island 8859
Tssr147075 17 27907706 to 27907770 64 - TSS region transcription start site region 147075
Gm49801 17 27907803 to 27908349 546 + antisense lncRNA gene predicted gene, 49801
Tssr143370 17 27907855 to 27907867 12 + TSS region transcription start site region 143370
Cpgi8860 17 27908575 to 27910188 1613 CpG island CpG island 8860
Tssr147076 17 27909110 to 27909146 36 - TSS region transcription start site region 147076
Tssr147077 17 27909206 to 27909264 58 - TSS region transcription start site region 147077
Tssr143371 17 27909287 to 27909314 27 + TSS region transcription start site region 143371
Anks1 17 27909306 to 28062775 153469 + protein coding gene ankyrin repeat and SAM domain containing 1
Tssr143372 17 27909337 to 27909409 72 + TSS region transcription start site region 143372
Tssr147078 17 27909646 to 27909658 12 - TSS region transcription start site region 147078
Tssr147079 17 27910200 to 27910249 49 - TSS region transcription start site region 147079
Tssr5054 17 27935115 to 27935124 9 - TSS region transcription start site region 5054
Gm15597 17 27959615 to 27965316 5701 - antisense lncRNA gene predicted gene 15597
Tssr147080 17 27970108 to 27970117 9 - TSS region transcription start site region 147080
Tssr143373 17 27979066 to 27979090 24 + TSS region transcription start site region 143373
Gm49802 17 27982392 to 27983158 766 + sense intronic lncRNA gene predicted gene, 49802
Cpgi8861 17 27986116 to 27986453 337 CpG island CpG island 8861
Gm35290 17 28001065 to 28002362 1297 - antisense lncRNA gene predicted gene, 35290
Tssr143374 17 28007346 to 28007409 63 + TSS region transcription start site region 143374
Tssr143375 17 28007471 to 28007502 31 + TSS region transcription start site region 143375
Tssr143376 17 28007521 to 28007540 19 + TSS region transcription start site region 143376
Tssr143377 17 28007582 to 28007596 14 + TSS region transcription start site region 143377
Tssr143378 17 28007648 to 28007694 46 + TSS region transcription start site region 143378
Tssr143379 17 28007695 to 28007704 9 + TSS region transcription start site region 143379
Tssr143380 17 28007991 to 28008028 37 + TSS region transcription start site region 143380
Cpgi8862 17 28008194 to 28008379 185 CpG island CpG island 8862
Tssr143381 17 28008279 to 28008307 28 + TSS region transcription start site region 143381
Tssr147081 17 28008552 to 28008580 28 - TSS region transcription start site region 147081
Cpgi8863 17 28015316 to 28015580 264 CpG island CpG island 8863
Tssr143382 17 28022168 to 28022198 30 + TSS region transcription start site region 143382
Tssr143383 17 28040780 to 28040811 31 + TSS region transcription start site region 143383
Tssr143384 17 28040814 to 28040832 18 + TSS region transcription start site region 143384
Cpgi8864 17 28042323 to 28042612 289 CpG island CpG island 8864
Tcp11 17 28066745 to 28080639 13894 - protein coding gene t-complex protein 11
Tssr147082 17 28066834 to 28066863 29 - TSS region transcription start site region 147082
Tssr147083 17 28067008 to 28067014 6 - TSS region transcription start site region 147083
Tssr147084 17 28067087 to 28067097 10 - TSS region transcription start site region 147084
Tssr147085 17 28068473 to 28068501 28 - TSS region transcription start site region 147085
Tssr143385 17 28069617 to 28069642 25 + TSS region transcription start site region 143385
Tssr147086 17 28074692 to 28074712 20 - TSS region transcription start site region 147086
4930526A20Rik 17 28075110 to 28076402 1292 - pseudogene RIKEN cDNA 4930526A20 gene
Cpgi8865 17 28079637 to 28080959 1322 CpG island CpG island 8865
Tssr147087 17 28079747 to 28079775 28 - TSS region transcription start site region 147087
Tssr147088 17 28079799 to 28079809 10 - TSS region transcription start site region 147088
Tssr143386 17 28079880 to 28079897 17 + TSS region transcription start site region 143386
Tssr147089 17 28080060 to 28080100 40 - TSS region transcription start site region 147089
Tssr147090 17 28080115 to 28080139 24 - TSS region transcription start site region 147090
Tssr147091 17 28080144 to 28080170 26 - TSS region transcription start site region 147091
Tssr147092 17 28080187 to 28080195 8 - TSS region transcription start site region 147092
Tssr147093 17 28080272 to 28080279 7 - TSS region transcription start site region 147093
Tssr147094 17 28080305 to 28080316 11 - TSS region transcription start site region 147094
Tssr147095 17 28080569 to 28080589 20 - TSS region transcription start site region 147095
Tssr147096 17 28080595 to 28080639 44 - TSS region transcription start site region 147096
Cpgi8866 17 28084943 to 28085131 188 CpG island CpG island 8866
Tssr143387 17 28098016 to 28098018 2 + TSS region transcription start site region 143387
Cpgi8867 17 28105399 to 28105819 420 CpG island CpG island 8867
Tssr143388 17 28124037 to 28124044 7 + TSS region transcription start site region 143388
D17Mit226 17 28128659 to 28128772 113 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 226