Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:27702240-28012247

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pacsin1 17 27655591 to 27711118 55527 + protein coding gene protein kinase C and casein kinase substrate in neurons 1
Tssr143356 17 27702522 to 27702525 3 + TSS region transcription start site region 143356
Cpgi8853 17 27702609 to 27702871 262 CpG island CpG island 8853
Tssr143357 17 27702715 to 27702741 26 + TSS region transcription start site region 143357
Tssr143358 17 27704472 to 27704487 15 + TSS region transcription start site region 143358
Tssr143359 17 27704500 to 27704505 5 + TSS region transcription start site region 143359
Cpgi8854 17 27707883 to 27708040 157 CpG island CpG island 8854
Spdef 17 27714352 to 27728955 14603 - protein coding gene SAM pointed domain containing ets transcription factor
Cpgi8855 17 27717013 to 27717388 375 CpG island CpG island 8855
Tssr147062 17 27728937 to 27728956 19 - TSS region transcription start site region 147062
Tssr147063 17 27729074 to 27729086 12 - TSS region transcription start site region 147063
Gm15458 17 27735220 to 27741492 6272 + lincRNA gene predicted gene 15458
Ilrun 17 27751232 to 27820542 69310 - protein coding gene inflammation and lipid regulator with UBA-like and NBR1-like domains
Tssr147064 17 27753826 to 27753876 50 - TSS region transcription start site region 147064
Tssr147065 17 27777937 to 27777948 11 - TSS region transcription start site region 147065
Rps2-ps9 17 27784379 to 27785246 867 + pseudogene ribosomal protein S2, pseudogene 9
Tssr147066 17 27797572 to 27797574 2 - TSS region transcription start site region 147066
Cpgi8856 17 27819660 to 27821076 1416 CpG island CpG island 8856
Tssr147067 17 27820445 to 27820464 19 - TSS region transcription start site region 147067
Tssr147068 17 27820473 to 27820482 9 - TSS region transcription start site region 147068
Tssr147069 17 27820498 to 27820529 31 - TSS region transcription start site region 147069
Tssr147070 17 27820534 to 27820572 38 - TSS region transcription start site region 147070
Tssr147071 17 27820613 to 27820683 70 - TSS region transcription start site region 147071
Tssr143360 17 27825229 to 27825249 20 + TSS region transcription start site region 143360
Tssr143361 17 27825279 to 27825300 21 + TSS region transcription start site region 143361
Tssr147072 17 27826037 to 27826044 7 - TSS region transcription start site region 147072
Tssr147073 17 27826924 to 27826958 34 - TSS region transcription start site region 147073
Cpgi8857 17 27839895 to 27840445 550 CpG island CpG island 8857
Tssr143362 17 27840057 to 27840119 62 + TSS region transcription start site region 143362
Snrpc 17 27840087 to 27851968 11881 + protein coding gene U1 small nuclear ribonucleoprotein C
Tssr143363 17 27840125 to 27840143 18 + TSS region transcription start site region 143363
Tssr143364 17 27840156 to 27840177 21 + TSS region transcription start site region 143364
Tssr143365 17 27840203 to 27840214 11 + TSS region transcription start site region 143365
Tssr143366 17 27847969 to 27847983 14 + TSS region transcription start site region 143366
Cpgi8858 17 27856230 to 27857397 1167 CpG island CpG island 8858
Tssr143367 17 27856443 to 27856511 68 + TSS region transcription start site region 143367
Uhrf1bp1 17 27856507 to 27900040 43533 + protein coding gene UHRF1 (ICBP90) binding protein 1
Tssr143368 17 27856520 to 27856544 24 + TSS region transcription start site region 143368
Tssr143369 17 27857240 to 27857247 7 + TSS region transcription start site region 143369
Gm49803 17 27868481 to 27868978 497 - pseudogene predicted gene, 49803
Taf11 17 27901128 to 27909242 8114 - protein coding gene TATA-box binding protein associated factor 11
Tssr147074 17 27904631 to 27904637 6 - TSS region transcription start site region 147074
Cpgi8859 17 27907328 to 27908159 831 CpG island CpG island 8859
Tssr147075 17 27907706 to 27907770 64 - TSS region transcription start site region 147075
Gm49801 17 27907803 to 27908349 546 + antisense lncRNA gene predicted gene, 49801
Tssr143370 17 27907855 to 27907867 12 + TSS region transcription start site region 143370
Cpgi8860 17 27908575 to 27910188 1613 CpG island CpG island 8860
Tssr147076 17 27909110 to 27909146 36 - TSS region transcription start site region 147076
Tssr147077 17 27909206 to 27909264 58 - TSS region transcription start site region 147077
Tssr143371 17 27909287 to 27909314 27 + TSS region transcription start site region 143371
Anks1 17 27909306 to 28062775 153469 + protein coding gene ankyrin repeat and SAM domain containing 1
Tssr143372 17 27909337 to 27909409 72 + TSS region transcription start site region 143372
Tssr147078 17 27909646 to 27909658 12 - TSS region transcription start site region 147078
Tssr147079 17 27910200 to 27910249 49 - TSS region transcription start site region 147079
Tssr5054 17 27935115 to 27935124 9 - TSS region transcription start site region 5054
Gm15597 17 27959615 to 27965316 5701 - antisense lncRNA gene predicted gene 15597
Tssr147080 17 27970108 to 27970117 9 - TSS region transcription start site region 147080
Tssr143373 17 27979066 to 27979090 24 + TSS region transcription start site region 143373
Gm49802 17 27982392 to 27983158 766 + sense intronic lncRNA gene predicted gene, 49802
Cpgi8861 17 27986116 to 27986453 337 CpG island CpG island 8861
Gm35290 17 28001065 to 28002362 1297 - antisense lncRNA gene predicted gene, 35290
Tssr143374 17 28007346 to 28007409 63 + TSS region transcription start site region 143374
Tssr143375 17 28007471 to 28007502 31 + TSS region transcription start site region 143375
Tssr143376 17 28007521 to 28007540 19 + TSS region transcription start site region 143376
Tssr143377 17 28007582 to 28007596 14 + TSS region transcription start site region 143377
Tssr143378 17 28007648 to 28007694 46 + TSS region transcription start site region 143378
Tssr143379 17 28007695 to 28007704 9 + TSS region transcription start site region 143379
Tssr143380 17 28007991 to 28008028 37 + TSS region transcription start site region 143380
Cpgi8862 17 28008194 to 28008379 185 CpG island CpG island 8862
Tssr143381 17 28008279 to 28008307 28 + TSS region transcription start site region 143381
Tssr147081 17 28008552 to 28008580 28 - TSS region transcription start site region 147081