Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:27627715-27777741

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(17D17Jcs40-D17Mit198)7Jcs 17 24928286 to 27659245 2730959 chromosomal deletion deletion, Chr 17, John C Schimenti 7
Gm49804 17 27580780 to 27635222 54442 - protein coding gene predicted gene, 49804
Rps10 17 27630420 to 27635481 5061 - protein coding gene ribosomal protein S10
Cpgi8847 17 27634660 to 27635561 901 CpG island CpG island 8847
Tssr147061 17 27635238 to 27635267 29 - TSS region transcription start site region 147061
Gm15420 17 27635343 to 27636868 1525 + antisense lncRNA gene predicted gene 15420
Cpgi8848 17 27639079 to 27639453 374 CpG island CpG island 8848
Cpgi8849 17 27650208 to 27650398 190 CpG island CpG island 8849
Cpgi8850 17 27654919 to 27656295 1376 CpG island CpG island 8850
Tssr143349 17 27655533 to 27655544 11 + TSS region transcription start site region 143349
Tssr143350 17 27655545 to 27655568 23 + TSS region transcription start site region 143350
Tssr143351 17 27655572 to 27655622 50 + TSS region transcription start site region 143351
Pacsin1 17 27655591 to 27711118 55527 + protein coding gene protein kinase C and casein kinase substrate in neurons 1
Tssr143352 17 27655656 to 27655659 3 + TSS region transcription start site region 143352
Tssr143353 17 27658495 to 27658499 4 + TSS region transcription start site region 143353
D17Mit198 17 27659145 to 27659245 100 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 198
Asbb3 17 27659145 to 27659245 100 QTL autoimmune susceptibility in C57BL/6J and BALB/c 3
Tir9 17 27659145 to 43574223 15915078 QTL trypanosome infection response 9
D17Dcr1 17 27659146 to 27659250 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 1
Cpgi8851 17 27684721 to 27685806 1085 CpG island CpG island 8851
Tssr143354 17 27685218 to 27685233 15 + TSS region transcription start site region 143354
Tssr143355 17 27685249 to 27685258 9 + TSS region transcription start site region 143355
Cpgi8852 17 27686137 to 27686336 199 CpG island CpG island 8852
Tssr143356 17 27702522 to 27702525 3 + TSS region transcription start site region 143356
Cpgi8853 17 27702609 to 27702871 262 CpG island CpG island 8853
Tssr143357 17 27702715 to 27702741 26 + TSS region transcription start site region 143357
Tssr143358 17 27704472 to 27704487 15 + TSS region transcription start site region 143358
Tssr143359 17 27704500 to 27704505 5 + TSS region transcription start site region 143359
Cpgi8854 17 27707883 to 27708040 157 CpG island CpG island 8854
Spdef 17 27714352 to 27728955 14603 - protein coding gene SAM pointed domain containing ets transcription factor
Cpgi8855 17 27717013 to 27717388 375 CpG island CpG island 8855
Tssr147062 17 27728937 to 27728956 19 - TSS region transcription start site region 147062
Tssr147063 17 27729074 to 27729086 12 - TSS region transcription start site region 147063
Gm15458 17 27735220 to 27741492 6272 + lincRNA gene predicted gene 15458
Ilrun 17 27751232 to 27820542 69310 - protein coding gene inflammation and lipid regulator with UBA-like and NBR1-like domains
Tssr147064 17 27753826 to 27753876 50 - TSS region transcription start site region 147064