Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:27563379-27683390

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(17D17Jcs40-D17Mit198)7Jcs 17 24928286 to 27659245 2730959 chromosomal deletion deletion, Chr 17, John C Schimenti 7
Hmga1 17 27556574 to 27563672 7098 + protein coding gene high mobility group AT-hook 1
AI413582 17 27563769 to 27565736 1967 - protein coding gene expressed sequence AI413582
Cpgi8845 17 27565056 to 27566202 1146 CpG island CpG island 8845
C130040N14Rik 17 27565117 to 27566225 1108 + antisense lncRNA gene RIKEN cDNA C130040N14 gene
Tssr147045 17 27565678 to 27565757 79 - TSS region transcription start site region 147045
Nudt3 17 27579382 to 27623452 44070 - protein coding gene nudix (nucleotide diphosphate linked moiety X)-type motif 3
Tssr147046 17 27580216 to 27580219 3 - TSS region transcription start site region 147046
Tssr147047 17 27580423 to 27580425 2 - TSS region transcription start site region 147047
Tssr147048 17 27580608 to 27580620 12 - TSS region transcription start site region 147048
Gm49804 17 27580780 to 27635222 54442 - protein coding gene predicted gene, 49804
Tssr147049 17 27596813 to 27596850 37 - TSS region transcription start site region 147049
Tssr147050 17 27596911 to 27596919 8 - TSS region transcription start site region 147050
Tssr147051 17 27597176 to 27597196 20 - TSS region transcription start site region 147051
Tssr147052 17 27597197 to 27597226 29 - TSS region transcription start site region 147052
Tssr143348 17 27622256 to 27622267 11 + TSS region transcription start site region 143348
Cpgi8846 17 27622583 to 27623942 1359 CpG island CpG island 8846
Tssr147053 17 27622785 to 27622854 69 - TSS region transcription start site region 147053
Tssr147054 17 27623336 to 27623345 9 - TSS region transcription start site region 147054
Tssr147055 17 27623379 to 27623390 11 - TSS region transcription start site region 147055
Tssr147056 17 27623391 to 27623416 25 - TSS region transcription start site region 147056
Tssr147057 17 27623441 to 27623495 54 - TSS region transcription start site region 147057
Gm49741 17 27623497 to 27624265 768 + bidirectional promoter lncRNA gene predicted gene, 49741
Tssr147058 17 27623757 to 27623785 28 - TSS region transcription start site region 147058
Tssr147059 17 27623788 to 27623815 27 - TSS region transcription start site region 147059
Tssr147060 17 27623820 to 27623831 11 - TSS region transcription start site region 147060
Rps10 17 27630420 to 27635481 5061 - protein coding gene ribosomal protein S10
Cpgi8847 17 27634660 to 27635561 901 CpG island CpG island 8847
Tssr147061 17 27635238 to 27635267 29 - TSS region transcription start site region 147061
Gm15420 17 27635343 to 27636868 1525 + antisense lncRNA gene predicted gene 15420
Cpgi8848 17 27639079 to 27639453 374 CpG island CpG island 8848
Cpgi8849 17 27650208 to 27650398 190 CpG island CpG island 8849
Cpgi8850 17 27654919 to 27656295 1376 CpG island CpG island 8850
Tssr143349 17 27655533 to 27655544 11 + TSS region transcription start site region 143349
Tssr143350 17 27655545 to 27655568 23 + TSS region transcription start site region 143350
Tssr143351 17 27655572 to 27655622 50 + TSS region transcription start site region 143351
Pacsin1 17 27655591 to 27711118 55527 + protein coding gene protein kinase C and casein kinase substrate in neurons 1
Tssr143352 17 27655656 to 27655659 3 + TSS region transcription start site region 143352
Tssr143353 17 27658495 to 27658499 4 + TSS region transcription start site region 143353
Asbb3 17 27659145 to 27659245 100 QTL autoimmune susceptibility in C57BL/6J and BALB/c 3
D17Mit198 17 27659145 to 27659245 100 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 198
Tir9 17 27659145 to 43574223 15915078 QTL trypanosome infection response 9
D17Dcr1 17 27659146 to 27659250 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 1