Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:27561443-28151511

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(17D17Jcs40-D17Mit198)7Jcs 17 24928286 to 27659245 2730959 chromosomal deletion deletion, Chr 17, John C Schimenti 7
Hmga1 17 27556574 to 27563672 7098 + protein coding gene high mobility group AT-hook 1
AI413582 17 27563769 to 27565736 1967 - protein coding gene expressed sequence AI413582
Cpgi8845 17 27565056 to 27566202 1146 CpG island CpG island 8845
C130040N14Rik 17 27565117 to 27566225 1108 + antisense lncRNA gene RIKEN cDNA C130040N14 gene
Tssr147045 17 27565678 to 27565757 79 - TSS region transcription start site region 147045
Nudt3 17 27579382 to 27623452 44070 - protein coding gene nudix (nucleotide diphosphate linked moiety X)-type motif 3
Tssr147046 17 27580216 to 27580219 3 - TSS region transcription start site region 147046
Tssr147047 17 27580423 to 27580425 2 - TSS region transcription start site region 147047
Tssr147048 17 27580608 to 27580620 12 - TSS region transcription start site region 147048
Gm49804 17 27580780 to 27635222 54442 - protein coding gene predicted gene, 49804
Tssr147049 17 27596813 to 27596850 37 - TSS region transcription start site region 147049
Tssr147050 17 27596911 to 27596919 8 - TSS region transcription start site region 147050
Tssr147051 17 27597176 to 27597196 20 - TSS region transcription start site region 147051
Tssr147052 17 27597197 to 27597226 29 - TSS region transcription start site region 147052
Tssr143348 17 27622256 to 27622267 11 + TSS region transcription start site region 143348
Cpgi8846 17 27622583 to 27623942 1359 CpG island CpG island 8846
Tssr147053 17 27622785 to 27622854 69 - TSS region transcription start site region 147053
Tssr147054 17 27623336 to 27623345 9 - TSS region transcription start site region 147054
Tssr147055 17 27623379 to 27623390 11 - TSS region transcription start site region 147055
Tssr147056 17 27623391 to 27623416 25 - TSS region transcription start site region 147056
Tssr147057 17 27623441 to 27623495 54 - TSS region transcription start site region 147057
Gm49741 17 27623497 to 27624265 768 + bidirectional promoter lncRNA gene predicted gene, 49741
Tssr147058 17 27623757 to 27623785 28 - TSS region transcription start site region 147058
Tssr147059 17 27623788 to 27623815 27 - TSS region transcription start site region 147059
Tssr147060 17 27623820 to 27623831 11 - TSS region transcription start site region 147060
Rps10 17 27630420 to 27635481 5061 - protein coding gene ribosomal protein S10
Cpgi8847 17 27634660 to 27635561 901 CpG island CpG island 8847
Tssr147061 17 27635238 to 27635267 29 - TSS region transcription start site region 147061
Gm15420 17 27635343 to 27636868 1525 + antisense lncRNA gene predicted gene 15420
Cpgi8848 17 27639079 to 27639453 374 CpG island CpG island 8848
Cpgi8849 17 27650208 to 27650398 190 CpG island CpG island 8849
Cpgi8850 17 27654919 to 27656295 1376 CpG island CpG island 8850
Tssr143349 17 27655533 to 27655544 11 + TSS region transcription start site region 143349
Tssr143350 17 27655545 to 27655568 23 + TSS region transcription start site region 143350
Tssr143351 17 27655572 to 27655622 50 + TSS region transcription start site region 143351
Pacsin1 17 27655591 to 27711118 55527 + protein coding gene protein kinase C and casein kinase substrate in neurons 1
Tssr143352 17 27655656 to 27655659 3 + TSS region transcription start site region 143352
Tssr143353 17 27658495 to 27658499 4 + TSS region transcription start site region 143353
Tir9 17 27659145 to 43574223 15915078 QTL trypanosome infection response 9
Asbb3 17 27659145 to 27659245 100 QTL autoimmune susceptibility in C57BL/6J and BALB/c 3
D17Mit198 17 27659145 to 27659245 100 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 198
D17Dcr1 17 27659146 to 27659250 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 1
Cpgi8851 17 27684721 to 27685806 1085 CpG island CpG island 8851
Tssr143354 17 27685218 to 27685233 15 + TSS region transcription start site region 143354
Tssr143355 17 27685249 to 27685258 9 + TSS region transcription start site region 143355
Cpgi8852 17 27686137 to 27686336 199 CpG island CpG island 8852
Tssr143356 17 27702522 to 27702525 3 + TSS region transcription start site region 143356
Cpgi8853 17 27702609 to 27702871 262 CpG island CpG island 8853
Tssr143357 17 27702715 to 27702741 26 + TSS region transcription start site region 143357
Tssr143358 17 27704472 to 27704487 15 + TSS region transcription start site region 143358
Tssr143359 17 27704500 to 27704505 5 + TSS region transcription start site region 143359
Cpgi8854 17 27707883 to 27708040 157 CpG island CpG island 8854
Spdef 17 27714352 to 27728955 14603 - protein coding gene SAM pointed domain containing ets transcription factor
Cpgi8855 17 27717013 to 27717388 375 CpG island CpG island 8855
Tssr147062 17 27728937 to 27728956 19 - TSS region transcription start site region 147062
Tssr147063 17 27729074 to 27729086 12 - TSS region transcription start site region 147063
Gm15458 17 27735220 to 27741492 6272 + lincRNA gene predicted gene 15458
Ilrun 17 27751232 to 27820542 69310 - protein coding gene inflammation and lipid regulator with UBA-like and NBR1-like domains
Tssr147064 17 27753826 to 27753876 50 - TSS region transcription start site region 147064
Tssr147065 17 27777937 to 27777948 11 - TSS region transcription start site region 147065
Rps2-ps9 17 27784379 to 27785246 867 + pseudogene ribosomal protein S2, pseudogene 9
Tssr147066 17 27797572 to 27797574 2 - TSS region transcription start site region 147066
Cpgi8856 17 27819660 to 27821076 1416 CpG island CpG island 8856
Tssr147067 17 27820445 to 27820464 19 - TSS region transcription start site region 147067
Tssr147068 17 27820473 to 27820482 9 - TSS region transcription start site region 147068
Tssr147069 17 27820498 to 27820529 31 - TSS region transcription start site region 147069
Tssr147070 17 27820534 to 27820572 38 - TSS region transcription start site region 147070
Tssr147071 17 27820613 to 27820683 70 - TSS region transcription start site region 147071
Tssr143360 17 27825229 to 27825249 20 + TSS region transcription start site region 143360
Tssr143361 17 27825279 to 27825300 21 + TSS region transcription start site region 143361
Tssr147072 17 27826037 to 27826044 7 - TSS region transcription start site region 147072
Tssr147073 17 27826924 to 27826958 34 - TSS region transcription start site region 147073
Cpgi8857 17 27839895 to 27840445 550 CpG island CpG island 8857
Tssr143362 17 27840057 to 27840119 62 + TSS region transcription start site region 143362
Snrpc 17 27840087 to 27851968 11881 + protein coding gene U1 small nuclear ribonucleoprotein C
Tssr143363 17 27840125 to 27840143 18 + TSS region transcription start site region 143363
Tssr143364 17 27840156 to 27840177 21 + TSS region transcription start site region 143364
Tssr143365 17 27840203 to 27840214 11 + TSS region transcription start site region 143365
Tssr143366 17 27847969 to 27847983 14 + TSS region transcription start site region 143366
Cpgi8858 17 27856230 to 27857397 1167 CpG island CpG island 8858
Tssr143367 17 27856443 to 27856511 68 + TSS region transcription start site region 143367
Uhrf1bp1 17 27856507 to 27900040 43533 + protein coding gene UHRF1 (ICBP90) binding protein 1
Tssr143368 17 27856520 to 27856544 24 + TSS region transcription start site region 143368
Tssr143369 17 27857240 to 27857247 7 + TSS region transcription start site region 143369
Gm49803 17 27868481 to 27868978 497 - pseudogene predicted gene, 49803
Taf11 17 27901128 to 27909242 8114 - protein coding gene TATA-box binding protein associated factor 11
Tssr147074 17 27904631 to 27904637 6 - TSS region transcription start site region 147074
Cpgi8859 17 27907328 to 27908159 831 CpG island CpG island 8859
Tssr147075 17 27907706 to 27907770 64 - TSS region transcription start site region 147075
Gm49801 17 27907803 to 27908349 546 + antisense lncRNA gene predicted gene, 49801
Tssr143370 17 27907855 to 27907867 12 + TSS region transcription start site region 143370
Cpgi8860 17 27908575 to 27910188 1613 CpG island CpG island 8860
Tssr147076 17 27909110 to 27909146 36 - TSS region transcription start site region 147076
Tssr147077 17 27909206 to 27909264 58 - TSS region transcription start site region 147077
Tssr143371 17 27909287 to 27909314 27 + TSS region transcription start site region 143371
Anks1 17 27909306 to 28062775 153469 + protein coding gene ankyrin repeat and SAM domain containing 1
Tssr143372 17 27909337 to 27909409 72 + TSS region transcription start site region 143372
Tssr147078 17 27909646 to 27909658 12 - TSS region transcription start site region 147078
Tssr147079 17 27910200 to 27910249 49 - TSS region transcription start site region 147079
Tssr5054 17 27935115 to 27935124 9 - TSS region transcription start site region 5054
Gm15597 17 27959615 to 27965316 5701 - antisense lncRNA gene predicted gene 15597
Tssr147080 17 27970108 to 27970117 9 - TSS region transcription start site region 147080
Tssr143373 17 27979066 to 27979090 24 + TSS region transcription start site region 143373
Gm49802 17 27982392 to 27983158 766 + sense intronic lncRNA gene predicted gene, 49802
Cpgi8861 17 27986116 to 27986453 337 CpG island CpG island 8861
Gm35290 17 28001065 to 28002362 1297 - antisense lncRNA gene predicted gene, 35290
Tssr143374 17 28007346 to 28007409 63 + TSS region transcription start site region 143374
Tssr143375 17 28007471 to 28007502 31 + TSS region transcription start site region 143375
Tssr143376 17 28007521 to 28007540 19 + TSS region transcription start site region 143376
Tssr143377 17 28007582 to 28007596 14 + TSS region transcription start site region 143377
Tssr143378 17 28007648 to 28007694 46 + TSS region transcription start site region 143378
Tssr143379 17 28007695 to 28007704 9 + TSS region transcription start site region 143379
Tssr143380 17 28007991 to 28008028 37 + TSS region transcription start site region 143380
Cpgi8862 17 28008194 to 28008379 185 CpG island CpG island 8862
Tssr143381 17 28008279 to 28008307 28 + TSS region transcription start site region 143381
Tssr147081 17 28008552 to 28008580 28 - TSS region transcription start site region 147081
Cpgi8863 17 28015316 to 28015580 264 CpG island CpG island 8863
Tssr143382 17 28022168 to 28022198 30 + TSS region transcription start site region 143382
Tssr143383 17 28040780 to 28040811 31 + TSS region transcription start site region 143383
Tssr143384 17 28040814 to 28040832 18 + TSS region transcription start site region 143384
Cpgi8864 17 28042323 to 28042612 289 CpG island CpG island 8864
Tcp11 17 28066745 to 28080639 13894 - protein coding gene t-complex protein 11
Tssr147082 17 28066834 to 28066863 29 - TSS region transcription start site region 147082
Tssr147083 17 28067008 to 28067014 6 - TSS region transcription start site region 147083
Tssr147084 17 28067087 to 28067097 10 - TSS region transcription start site region 147084
Tssr147085 17 28068473 to 28068501 28 - TSS region transcription start site region 147085
Tssr143385 17 28069617 to 28069642 25 + TSS region transcription start site region 143385
Tssr147086 17 28074692 to 28074712 20 - TSS region transcription start site region 147086
4930526A20Rik 17 28075110 to 28076402 1292 - pseudogene RIKEN cDNA 4930526A20 gene
Cpgi8865 17 28079637 to 28080959 1322 CpG island CpG island 8865
Tssr147087 17 28079747 to 28079775 28 - TSS region transcription start site region 147087
Tssr147088 17 28079799 to 28079809 10 - TSS region transcription start site region 147088
Tssr143386 17 28079880 to 28079897 17 + TSS region transcription start site region 143386
Tssr147089 17 28080060 to 28080100 40 - TSS region transcription start site region 147089
Tssr147090 17 28080115 to 28080139 24 - TSS region transcription start site region 147090
Tssr147091 17 28080144 to 28080170 26 - TSS region transcription start site region 147091
Tssr147092 17 28080187 to 28080195 8 - TSS region transcription start site region 147092
Tssr147093 17 28080272 to 28080279 7 - TSS region transcription start site region 147093
Tssr147094 17 28080305 to 28080316 11 - TSS region transcription start site region 147094
Tssr147095 17 28080569 to 28080589 20 - TSS region transcription start site region 147095
Tssr147096 17 28080595 to 28080639 44 - TSS region transcription start site region 147096
Cpgi8866 17 28084943 to 28085131 188 CpG island CpG island 8866
Tssr143387 17 28098016 to 28098018 2 + TSS region transcription start site region 143387
Cpgi8867 17 28105399 to 28105819 420 CpG island CpG island 8867
Tssr143388 17 28124037 to 28124044 7 + TSS region transcription start site region 143388
D17Mit226 17 28128659 to 28128772 113 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 226
Cpgi8868 17 28133340 to 28133529 189 CpG island CpG island 8868
Gm49897 17 28139628 to 28140106 478 - unclassified gene predicted gene, 49897
Cpgi8869 17 28141247 to 28143138 1891 CpG island CpG island 8869
Scube3 17 28142141 to 28174854 32713 + protein coding gene signal peptide, CUB domain, EGF-like 3
Tssr143389 17 28142182 to 28142193 11 + TSS region transcription start site region 143389
Tssr143390 17 28142267 to 28142321 54 + TSS region transcription start site region 143390
Tssr143391 17 28147540 to 28147544 4 + TSS region transcription start site region 143391