Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:26822274-27422278

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168 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(17D17Jcs41-D17Jcs15)8Jcs 17 25022791 to 27025780 2002989 chromosomal deletion deletion, Chr 17, John C Schimenti 8
Cpgi8817 17 26837021 to 26837400 379 CpG island CpG island 8817
Cpgi8818 17 26838647 to 26840111 1464 CpG island CpG island 8818
Nkx2-5 17 26838664 to 26841565 2901 - protein coding gene NK2 homeobox 5
Cpgi8819 17 26841026 to 26841592 566 CpG island CpG island 8819
Tssr146969 17 26841241 to 26841248 7 - TSS region transcription start site region 146969
Tssr146970 17 26841464 to 26841497 33 - TSS region transcription start site region 146970
Tssr146971 17 26841504 to 26841513 9 - TSS region transcription start site region 146971
Tssr146972 17 26841519 to 26841524 5 - TSS region transcription start site region 146972
Tssr146973 17 26841576 to 26841591 15 - TSS region transcription start site region 146973
Cpgi8820 17 26844338 to 26844913 575 CpG island CpG island 8820
Cpgi8821 17 26849600 to 26851174 1574 CpG island CpG island 8821
Tssr143271 17 26850666 to 26850687 21 + TSS region transcription start site region 143271
Gm17382 17 26860287 to 26886175 25888 - lincRNA gene predicted gene, 17382
Gm20468 17 26861443 to 26897886 36443 + lincRNA gene predicted gene 20468
D17Jcs54 17 26863381 to 26863593 212 DNA segment DNA segment, Chr 17, John C. Schimenti 54
Gm29819 17 26880214 to 26880672 458 - pseudogene predicted gene, 29819
Cpgi8822 17 26885060 to 26885261 201 CpG island CpG island 8822
Tssr143272 17 26885156 to 26885184 28 + TSS region transcription start site region 143272
Cpgi8823 17 26886017 to 26886367 350 CpG island CpG island 8823
Tssr146974 17 26886235 to 26886248 13 - TSS region transcription start site region 146974
Gm41555 17 26896316 to 26900644 4328 - lncRNA gene predicted gene, 41555
D17Jcs124 17 26899109 to 26899294 185 DNA segment DNA segment, Chr 17, John C. Schimenti 124
Cpgi8824 17 26916704 to 26917719 1015 CpG island CpG island 8824
Kifc5b 17 26917091 to 26932579 15488 + protein coding gene kinesin family member C5B
Tssr143273 17 26917096 to 26917107 11 + TSS region transcription start site region 143273
Tssr143274 17 26917111 to 26917159 48 + TSS region transcription start site region 143274
Gm27775 17 26920962 to 26921019 57 + miRNA gene predicted gene, 27775
Cpgi8825 17 26932717 to 26933694 977 CpG island CpG island 8825
Tssr143275 17 26933043 to 26933060 17 + TSS region transcription start site region 143275
Tssr143276 17 26933070 to 26933158 88 + TSS region transcription start site region 143276
Phf1 17 26933127 to 26937890 4763 + protein coding gene PHD finger protein 1
Tssr143277 17 26933301 to 26933385 84 + TSS region transcription start site region 143277
Mir6968 17 26935472 to 26935539 67 + miRNA gene microRNA 6968
Tssr143278 17 26937971 to 26937979 8 + TSS region transcription start site region 143278
Cuta 17 26937973 to 26939478 1505 - protein coding gene cutA divalent cation tolerance homolog
Cpgi8826 17 26938728 to 26940260 1532 CpG island CpG island 8826
Tssr146975 17 26938804 to 26938816 12 - TSS region transcription start site region 146975
Tssr146976 17 26939083 to 26939108 25 - TSS region transcription start site region 146976
Tssr146977 17 26939198 to 26939213 15 - TSS region transcription start site region 146977
Tssr146978 17 26939244 to 26939258 14 - TSS region transcription start site region 146978
Tssr146979 17 26939263 to 26939307 44 - TSS region transcription start site region 146979
Tssr146980 17 26939371 to 26939397 26 - TSS region transcription start site region 146980
Tssr146981 17 26939413 to 26939427 14 - TSS region transcription start site region 146981
Tssr146982 17 26939439 to 26939463 24 - TSS region transcription start site region 146982
Tssr146983 17 26939464 to 26939525 61 - TSS region transcription start site region 146983
Tssr146984 17 26939543 to 26939554 11 - TSS region transcription start site region 146984
Tssr143279 17 26941230 to 26941270 40 + TSS region transcription start site region 143279
Tssr143280 17 26941277 to 26941316 39 + TSS region transcription start site region 143280
Syngap1 17 26941408 to 26972434 31026 + protein coding gene synaptic Ras GTPase activating protein 1 homolog (rat)
Tssr143281 17 26941420 to 26941464 44 + TSS region transcription start site region 143281
Cpgi8827 17 26946359 to 26947175 816 CpG island CpG island 8827
Mir3083 17 26948056 to 26948119 63 - miRNA gene microRNA 3083
Cpgi8828 17 26948312 to 26949568 1256 CpG island CpG island 8828
Tssr143282 17 26948401 to 26948428 27 + TSS region transcription start site region 143282
Tssr143283 17 26948616 to 26948640 24 + TSS region transcription start site region 143283
Tssr143284 17 26948646 to 26948686 40 + TSS region transcription start site region 143284
Tssr143285 17 26948921 to 26948978 57 + TSS region transcription start site region 143285
Tssr143286 17 26951657 to 26951684 27 + TSS region transcription start site region 143286
Tssr143287 17 26951703 to 26951720 17 + TSS region transcription start site region 143287
Tssr143288 17 26952837 to 26952854 17 + TSS region transcription start site region 143288
Tssr143289 17 26952861 to 26952878 17 + TSS region transcription start site region 143289
Tssr146985 17 26956911 to 26956929 18 - TSS region transcription start site region 146985
Tssr143290 17 26970987 to 26970994 7 + TSS region transcription start site region 143290
Tssr143291 17 26971798 to 26971823 25 + TSS region transcription start site region 143291
Tssr143292 17 26971975 to 26971978 3 + TSS region transcription start site region 143292
Tssr143293 17 26972251 to 26972266 15 + TSS region transcription start site region 143293
Tssr143294 17 26972372 to 26972381 9 + TSS region transcription start site region 143294
Cpgi8829 17 26972536 to 26973922 1386 CpG island CpG island 8829
Tssr146986 17 26973027 to 26973052 25 - TSS region transcription start site region 146986
Tssr143295 17 26973161 to 26973219 58 + TSS region transcription start site region 143295
Zbtb9 17 26973179 to 26976203 3024 + protein coding gene zinc finger and BTB domain containing 9
Tssr143296 17 26998041 to 26998050 9 + TSS region transcription start site region 143296
Cpgi8830 17 27017921 to 27018297 376 CpG island CpG island 8830
Tssr143297 17 27017992 to 27018003 11 + TSS region transcription start site region 143297
Tssr143298 17 27018005 to 27018067 62 + TSS region transcription start site region 143298
Ggnbp1 17 27018035 to 27036378 18343 + protein coding gene gametogenetin binding protein 1
Bak1 17 27019812 to 27028839 9027 - protein coding gene BCL2-antagonist/killer 1
Tssr146987 17 27020623 to 27020643 20 - TSS region transcription start site region 146987
Tssr146988 17 27020655 to 27020682 27 - TSS region transcription start site region 146988
Tssr146989 17 27020830 to 27020871 41 - TSS region transcription start site region 146989
Tssr146990 17 27021230 to 27021267 37 - TSS region transcription start site region 146990
Tssr146991 17 27021272 to 27021304 32 - TSS region transcription start site region 146991
D17Jcs15 17 27025541 to 27025780 239 DNA segment DNA segment, Chr 17, John C. Schimenti 15
Cpgi8831 17 27028381 to 27028658 277 CpG island CpG island 8831
Tssr146992 17 27028517 to 27028528 11 - TSS region transcription start site region 146992
Tssr146993 17 27028534 to 27028606 72 - TSS region transcription start site region 146993
Tssr146994 17 27028610 to 27028615 5 - TSS region transcription start site region 146994
Tssr146995 17 27028620 to 27028631 11 - TSS region transcription start site region 146995
Tssr146996 17 27028915 to 27028932 17 - TSS region transcription start site region 146996
Tssr143299 17 27029362 to 27029366 4 + TSS region transcription start site region 143299
Tssr143300 17 27029369 to 27029415 46 + TSS region transcription start site region 143300
Tssr143301 17 27029418 to 27029424 6 + TSS region transcription start site region 143301
Cpgi8832 17 27032840 to 27033070 230 CpG island CpG island 8832
Tssr143302 17 27037810 to 27037827 17 + TSS region transcription start site region 143302
Tssr143303 17 27038134 to 27038136 2 + TSS region transcription start site region 143303
Tssr146997 17 27038437 to 27038446 9 - TSS region transcription start site region 146997
Tssr143304 17 27038621 to 27038632 11 + TSS region transcription start site region 143304
Tssr146998 17 27039529 to 27039552 23 - TSS region transcription start site region 146998
Tssr146999 17 27043098 to 27043109 11 - TSS region transcription start site region 146999
Tssr147000 17 27043128 to 27043145 17 - TSS region transcription start site region 147000
Cpgi8833 17 27056819 to 27057968 1149 CpG island CpG island 8833
Tssr147001 17 27057189 to 27057203 14 - TSS region transcription start site region 147001
Tssr143305 17 27057288 to 27057334 46 + TSS region transcription start site region 143305
Itpr3 17 27057304 to 27122223 64919 + protein coding gene inositol 1,4,5-triphosphate receptor 3
Tssr143306 17 27057340 to 27057356 16 + TSS region transcription start site region 143306
Tssr143307 17 27057363 to 27057372 9 + TSS region transcription start site region 143307
Tssr143308 17 27057425 to 27057436 11 + TSS region transcription start site region 143308
Tssr143309 17 27084973 to 27084980 7 + TSS region transcription start site region 143309
Mir7677 17 27091245 to 27091311 66 + miRNA gene microRNA 7677
Itpr3os 17 27099658 to 27101440 1782 - antisense lncRNA gene inositol 1,4,5-triphosphate receptor 3, opposite strand
Tssr147002 17 27101430 to 27101455 25 - TSS region transcription start site region 147002
Tssr143310 17 27101534 to 27101563 29 + TSS region transcription start site region 143310
Tssr143311 17 27115980 to 27115994 14 + TSS region transcription start site region 143311
Cpgi8834 17 27119222 to 27119414 192 CpG island CpG island 8834
Cpgi8835 17 27121290 to 27121501 211 CpG island CpG island 8835
Tssr143312 17 27122274 to 27122278 4 + TSS region transcription start site region 143312
Uqcc2 17 27122665 to 27133891 11226 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 2
Cpgi8836 17 27125287 to 27125455 168 CpG island CpG island 8836
Cpgi8837 17 27133401 to 27134125 724 CpG island CpG island 8837
Tssr147003 17 27133592 to 27133603 11 - TSS region transcription start site region 147003
Tssr147004 17 27133620 to 27133642 22 - TSS region transcription start site region 147004
Tssr147005 17 27133645 to 27133660 15 - TSS region transcription start site region 147005
Tssr147006 17 27133879 to 27133897 18 - TSS region transcription start site region 147006
Tssr147007 17 27133906 to 27133924 18 - TSS region transcription start site region 147007
Ip6k3 17 27143971 to 27167764 23793 - protein coding gene inositol hexaphosphate kinase 3
Tssr147008 17 27167705 to 27167736 31 - TSS region transcription start site region 147008
Tssr147009 17 27167748 to 27167757 9 - TSS region transcription start site region 147009
Tssr147010 17 27167759 to 27167777 18 - TSS region transcription start site region 147010
Tssr147011 17 27167789 to 27167801 12 - TSS region transcription start site region 147011
Lemd2 17 27189601 to 27204438 14837 - protein coding gene LEM domain containing 2
Gm26724 17 27201032 to 27203071 2039 + lincRNA gene predicted gene, 26724
Tssr147012 17 27203087 to 27203088 1 - TSS region transcription start site region 147012
Cpgi8838 17 27203292 to 27204970 1678 CpG island CpG island 8838
Tssr143313 17 27203299 to 27203316 17 + TSS region transcription start site region 143313
Tssr143314 17 27203341 to 27203346 5 + TSS region transcription start site region 143314
Tssr147013 17 27204357 to 27204447 90 - TSS region transcription start site region 147013
Tssr147014 17 27204450 to 27204477 27 - TSS region transcription start site region 147014
Gm34736 17 27204515 to 27213810 9295 + lncRNA gene predicted gene, 34736
9630028I04Rik 17 27235075 to 27248066 12991 - lncRNA gene RIKEN cDNA 9630028I04 gene
Tssr147015 17 27242625 to 27242680 55 - TSS region transcription start site region 147015
Tssr147016 17 27245066 to 27245076 10 - TSS region transcription start site region 147016
Gm49793 17 27308316 to 27318696 10380 - lincRNA gene predicted gene, 49793
Mir7214 17 27317035 to 27317095 60 - miRNA gene microRNA 7214
Tssr147017 17 27323182 to 27323193 11 - TSS region transcription start site region 147017
Tssr147018 17 27323320 to 27323361 41 - TSS region transcription start site region 147018
4930556A12Rik 17 27323910 to 27325052 1142 unclassified gene RIKEN cDNA 4930556A12 gene
Tssr147019 17 27325023 to 27325034 11 - TSS region transcription start site region 147019
Gm10505 17 27325035 to 27344833 19798 + lincRNA gene predicted gene 10505
Tssr147020 17 27325048 to 27325056 8 - TSS region transcription start site region 147020
Cpgi8839 17 27325076 to 27325834 758 CpG island CpG island 8839
Tssr143315 17 27325194 to 27325198 4 + TSS region transcription start site region 143315
4930442P07Rik 17 27325353 to 27327009 1656 unclassified gene RIKEN cDNA 4930442P07 gene
Tssr143316 17 27325355 to 27325360 5 + TSS region transcription start site region 143316
Tssr143317 17 27325381 to 27325386 5 + TSS region transcription start site region 143317
Tssr143318 17 27325388 to 27325400 12 + TSS region transcription start site region 143318
Mir7216 17 27328385 to 27328460 75 + miRNA gene microRNA 7216
Tssr143319 17 27342453 to 27342470 17 + TSS region transcription start site region 143319
Gm49795 17 27353861 to 27354668 807 - lincRNA gene predicted gene, 49795
Gm49794 17 27354111 to 27367492 13381 + lincRNA gene predicted gene, 49794
Tssr5051 17 27354800 to 27354803 3 + TSS region transcription start site region 5051
Mir7217 17 27355738 to 27355799 61 + miRNA gene microRNA 7217
Mir7218 17 27358097 to 27358155 58 + miRNA gene microRNA 7218
Tssr147021 17 27364470 to 27364487 17 - TSS region transcription start site region 147021
Gm35007 17 27397020 to 27398874 1854 - lncRNA gene predicted gene, 35007
Tssr143320 17 27398135 to 27398183 48 + TSS region transcription start site region 143320
Gm49796 17 27398147 to 27399221 1074 + lincRNA gene predicted gene, 49796
Tssr143321 17 27398212 to 27398215 3 + TSS region transcription start site region 143321