Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:26223788-29023815

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799 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(17D17Jcs40-D17Mit198)7Jcs 17 24928286 to 27659245 2730959 chromosomal deletion deletion, Chr 17, John C Schimenti 7
Del(17D17Jcs41-D17Jcs15)8Jcs 17 25022791 to 27025780 2002989 chromosomal deletion deletion, Chr 17, John C Schimenti 8
Opfaq5 17 25731951 to 28773124 3041173 QTL open field activity QTL 5
Fam234a 17 26212692 to 26244245 31553 - protein coding gene family with sequence similarity 234, member A
Gm3946 17 26223711 to 26224554 843 + pseudogene predicted gene 3946
Gm20026 17 26232564 to 26232881 317 + pseudogene predicted gene, 20026
Cpgi8805 17 26243662 to 26244435 773 CpG island CpG island 8805
Tssr146930 17 26244118 to 26244177 59 - TSS region transcription start site region 146930
Tssr146931 17 26244190 to 26244199 9 - TSS region transcription start site region 146931
Tssr146932 17 26244203 to 26244228 25 - TSS region transcription start site region 146932
Gm50007 17 26251350 to 26251445 95 - pseudogene predicted gene, 50007
Cpgi8806 17 26252700 to 26253726 1026 CpG island CpG island 8806
Tssr146933 17 26252855 to 26252875 20 - TSS region transcription start site region 146933
Luc7l 17 26252896 to 26285504 32608 + protein coding gene Luc7-like
Tssr143218 17 26252903 to 26252914 11 + TSS region transcription start site region 143218
Tssr143219 17 26252915 to 26252983 68 + TSS region transcription start site region 143219
Tssr143220 17 26252987 to 26252996 9 + TSS region transcription start site region 143220
D17Mit174 17 26258644 to 26258777 133 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 174
D17Mit173 17 26258655 to 26258777 122 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 173
Gm50013 17 26267395 to 26274744 7349 - antisense lncRNA gene predicted gene, 50013
Gm16580 17 26269337 to 26270381 1044 + pseudogene predicted gene 16580
Tssr143221 17 26270260 to 26270292 32 + TSS region transcription start site region 143221
Tssr143222 17 26270352 to 26270386 34 + TSS region transcription start site region 143222
Tssr143223 17 26270390 to 26270402 12 + TSS region transcription start site region 143223
Tssr143224 17 26272956 to 26272962 6 + TSS region transcription start site region 143224
Tssr143225 17 26275795 to 26275799 4 + TSS region transcription start site region 143225
Hba-ps4 17 26286363 to 26287061 698 - pseudogene hemoglobin alpha, pseudogene 4
Eye2 17 26286363 to 40794146 14507783 QTL eye weight 2
Hst4 17 26286363 to 29495465 3209102 heritable phenotypic marker hybrid sterility 4
Tssr146934 17 26287058 to 26287065 7 - TSS region transcription start site region 146934
Gm50015 17 26317418 to 26322622 5204 - lincRNA gene predicted gene, 50015
Tssr143226 17 26360366 to 26360416 50 + TSS region transcription start site region 143226
Cpgi8807 17 26414210 to 26415794 1584 CpG island CpG island 8807
Tssr143227 17 26414820 to 26414895 75 + TSS region transcription start site region 143227
Neurl1b 17 26414965 to 26446349 31384 + protein coding gene neuralized E3 ubiquitin protein ligase 1B
Cpgi8808 17 26431737 to 26432399 662 CpG island CpG island 8808
Cpgi8809 17 26438264 to 26439423 1159 CpG island CpG island 8809
Tssr143228 17 26442153 to 26442156 3 + TSS region transcription start site region 143228
Tssr146935 17 26465098 to 26465135 37 - TSS region transcription start site region 146935
Gm34455 17 26467654 to 26503322 35668 - lncRNA gene predicted gene, 34455
Tssr146936 17 26490915 to 26490918 3 - TSS region transcription start site region 146936
D17Pri8 17 26496611 to 26497056 445 DNA segment DNA segment, Chr 17, Princeton University 8
Tssr146937 17 26503092 to 26503101 9 - TSS region transcription start site region 146937
Tssr143229 17 26503379 to 26503398 19 + TSS region transcription start site region 143229
Tssr146938 17 26504327 to 26504340 13 - TSS region transcription start site region 146938
Dusp1 17 26505591 to 26508472 2881 - protein coding gene dual specificity phosphatase 1
Tssr146939 17 26505955 to 26505967 12 - TSS region transcription start site region 146939
Tssr146940 17 26505986 to 26505997 11 - TSS region transcription start site region 146940
Tssr146941 17 26506144 to 26506166 22 - TSS region transcription start site region 146941
Tssr146942 17 26506172 to 26506188 16 - TSS region transcription start site region 146942
Tssr146943 17 26506248 to 26506270 22 - TSS region transcription start site region 146943
Tssr143230 17 26506253 to 26506371 118 + TSS region transcription start site region 143230
Tssr146944 17 26506378 to 26506395 17 - TSS region transcription start site region 146944
Tssr146945 17 26506438 to 26506458 20 - TSS region transcription start site region 146945
Tssr146946 17 26506502 to 26506516 14 - TSS region transcription start site region 146946
Tssr146947 17 26506526 to 26506537 11 - TSS region transcription start site region 146947
Tssr146948 17 26506543 to 26506563 20 - TSS region transcription start site region 146948
Tssr146949 17 26506610 to 26506631 21 - TSS region transcription start site region 146949
Cpgi8810 17 26507105 to 26507350 245 CpG island CpG island 8810
Tssr146950 17 26507153 to 26507172 19 - TSS region transcription start site region 146950
Tssr143231 17 26507494 to 26507501 7 + TSS region transcription start site region 143231
Cpgi8811 17 26507570 to 26509023 1453 CpG island CpG island 8811
Tssr146951 17 26507628 to 26507659 31 - TSS region transcription start site region 146951
Tssr146952 17 26508189 to 26508207 18 - TSS region transcription start site region 146952
Tssr146953 17 26508214 to 26508247 33 - TSS region transcription start site region 146953
Tssr146954 17 26508463 to 26508482 19 - TSS region transcription start site region 146954
Tssr143232 17 26508648 to 26508680 32 + TSS region transcription start site region 143232
Tssr143233 17 26508697 to 26508731 34 + TSS region transcription start site region 143233
Tssr143234 17 26508749 to 26508774 25 + TSS region transcription start site region 143234
Tssr146955 17 26508864 to 26508882 18 - TSS region transcription start site region 146955
Tssr5044 17 26508951 to 26508964 13 + TSS region transcription start site region 5044
Tssr5045 17 26509463 to 26509468 5 - TSS region transcription start site region 5045
Tssr146956 17 26509494 to 26509499 5 - TSS region transcription start site region 146956
Tssr5046 17 26509516 to 26509521 5 - TSS region transcription start site region 5046
Tssr5047 17 26509525 to 26509532 7 - TSS region transcription start site region 5047
Tssr146957 17 26509559 to 26509569 10 - TSS region transcription start site region 146957
Tssr143235 17 26509701 to 26509708 7 + TSS region transcription start site region 143235
Tssr143236 17 26509726 to 26509741 15 + TSS region transcription start site region 143236
Tssr143237 17 26512727 to 26512760 33 + TSS region transcription start site region 143237
Tssr146958 17 26514760 to 26514765 5 - TSS region transcription start site region 146958
Tssr143238 17 26514926 to 26514952 26 + TSS region transcription start site region 143238
D17Lon7 17 26526025 to 26526242 217 DNA segment DNA segment, Chr 17, London 7
Tssr146959 17 26531682 to 26531697 15 - TSS region transcription start site region 146959
Tssr143239 17 26531808 to 26531839 31 + TSS region transcription start site region 143239
Tssr146960 17 26532614 to 26532617 3 - TSS region transcription start site region 146960
Tssr146961 17 26532637 to 26532647 10 - TSS region transcription start site region 146961
Tssr146962 17 26532665 to 26532676 11 - TSS region transcription start site region 146962
Tssr146963 17 26532710 to 26532723 13 - TSS region transcription start site region 146963
Tssr143240 17 26532879 to 26532886 7 + TSS region transcription start site region 143240
Tssr143241 17 26532895 to 26532900 5 + TSS region transcription start site region 143241
Tssr143242 17 26532909 to 26532930 21 + TSS region transcription start site region 143242
Tssr143243 17 26532934 to 26532955 21 + TSS region transcription start site region 143243
Tssr143244 17 26532965 to 26532972 7 + TSS region transcription start site region 143244
Tssr143245 17 26534125 to 26534173 48 + TSS region transcription start site region 143245
Gm34606 17 26534926 to 26535422 496 + lncRNA gene predicted gene, 34606
Tssr5048 17 26535331 to 26535357 26 + TSS region transcription start site region 5048
Tssr5049 17 26535398 to 26535408 10 - TSS region transcription start site region 5049
Tssr5050 17 26535829 to 26535836 7 + TSS region transcription start site region 5050
Tssr143246 17 26538330 to 26538352 22 + TSS region transcription start site region 143246
Gm8225 17 26542760 to 26543715 955 + pseudogene predicted gene 8225
Tssr143247 17 26551440 to 26551476 36 + TSS region transcription start site region 143247
1700049J03Rik 17 26554254 to 26561499 7245 - antisense lncRNA gene RIKEN cDNA 1700049J03 gene
Tssr143248 17 26560718 to 26560742 24 + TSS region transcription start site region 143248
Cpgi8812 17 26561222 to 26562051 829 CpG island CpG island 8812
Tssr146964 17 26561365 to 26561386 21 - TSS region transcription start site region 146964
Tssr143249 17 26561461 to 26561474 13 + TSS region transcription start site region 143249
Tssr143250 17 26561479 to 26561505 26 + TSS region transcription start site region 143250
Ergic1 17 26561489 to 26656931 95442 + protein coding gene endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
Tssr143251 17 26561515 to 26561592 77 + TSS region transcription start site region 143251
Tssr146965 17 26570713 to 26570750 37 - TSS region transcription start site region 146965
Tssr146966 17 26570803 to 26570846 43 - TSS region transcription start site region 146966
Tssr143252 17 26571102 to 26571124 22 + TSS region transcription start site region 143252
Tssr143253 17 26571166 to 26571173 7 + TSS region transcription start site region 143253
Tssr146967 17 26572242 to 26572258 16 - TSS region transcription start site region 146967
Gm22420 17 26580802 to 26580927 125 - miRNA gene predicted gene, 22420
Tssr143254 17 26602222 to 26602236 14 + TSS region transcription start site region 143254
Tssr143255 17 26602267 to 26602274 7 + TSS region transcription start site region 143255
Tssr143256 17 26607831 to 26607845 14 + TSS region transcription start site region 143256
Cfq12 17 26609807 to 30445981 3836174 QTL conditioned fear QTL 12
Gm17218 17 26620358 to 26625100 4742 - antisense lncRNA gene predicted gene 17218
Tssr143257 17 26621512 to 26621521 9 + TSS region transcription start site region 143257
Tssr143258 17 26624178 to 26624188 10 + TSS region transcription start site region 143258
Tssr143259 17 26624198 to 26624199 1 + TSS region transcription start site region 143259
Gm41553 17 26641711 to 26652856 11145 + lncRNA gene predicted gene, 41553
Tssr143260 17 26655919 to 26655955 36 + TSS region transcription start site region 143260
Cpgi8813 17 26662982 to 26663463 481 CpG island CpG island 8813
Tssr143261 17 26663197 to 26663212 15 + TSS region transcription start site region 143261
Cpgi8814 17 26675994 to 26676970 976 CpG island CpG island 8814
Tssr143262 17 26676387 to 26676388 1 + TSS region transcription start site region 143262
Tssr143263 17 26676390 to 26676401 11 + TSS region transcription start site region 143263
Atp6v0e 17 26676396 to 26699644 23248 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit E
Tssr143264 17 26676405 to 26676466 61 + TSS region transcription start site region 143264
Tssr143265 17 26682671 to 26682697 26 + TSS region transcription start site region 143265
Tssr143266 17 26699274 to 26699318 44 + TSS region transcription start site region 143266
Tssr143267 17 26699324 to 26699337 13 + TSS region transcription start site region 143267
Cpgi8815 17 26715337 to 26716751 1414 CpG island CpG island 8815
Tssr143268 17 26715644 to 26715702 58 + TSS region transcription start site region 143268
Crebrf 17 26715650 to 26776635 60985 + protein coding gene CREB3 regulatory factor
Tssr146968 17 26716222 to 26716260 38 - TSS region transcription start site region 146968
D17Mit80 17 26722888 to 26723032 144 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 80
Tssr143269 17 26766547 to 26766593 46 + TSS region transcription start site region 143269
Cpgi8816 17 26780912 to 26781458 546 CpG island CpG island 8816
Tssr143270 17 26781060 to 26781094 34 + TSS region transcription start site region 143270
Bnip1 17 26781079 to 26792521 11442 + protein coding gene BCL2/adenovirus E1B interacting protein 1
Cpgi8817 17 26837021 to 26837400 379 CpG island CpG island 8817
Cpgi8818 17 26838647 to 26840111 1464 CpG island CpG island 8818
Nkx2-5 17 26838664 to 26841565 2901 - protein coding gene NK2 homeobox 5
Cpgi8819 17 26841026 to 26841592 566 CpG island CpG island 8819
Tssr146969 17 26841241 to 26841248 7 - TSS region transcription start site region 146969
Tssr146970 17 26841464 to 26841497 33 - TSS region transcription start site region 146970
Tssr146971 17 26841504 to 26841513 9 - TSS region transcription start site region 146971
Tssr146972 17 26841519 to 26841524 5 - TSS region transcription start site region 146972
Tssr146973 17 26841576 to 26841591 15 - TSS region transcription start site region 146973
Cpgi8820 17 26844338 to 26844913 575 CpG island CpG island 8820
Cpgi8821 17 26849600 to 26851174 1574 CpG island CpG island 8821
Tssr143271 17 26850666 to 26850687 21 + TSS region transcription start site region 143271
Gm17382 17 26860287 to 26886175 25888 - lincRNA gene predicted gene, 17382
Gm20468 17 26861443 to 26897886 36443 + lincRNA gene predicted gene 20468
D17Jcs54 17 26863381 to 26863593 212 DNA segment DNA segment, Chr 17, John C. Schimenti 54
Gm29819 17 26880214 to 26880672 458 - pseudogene predicted gene, 29819
Cpgi8822 17 26885060 to 26885261 201 CpG island CpG island 8822
Tssr143272 17 26885156 to 26885184 28 + TSS region transcription start site region 143272
Cpgi8823 17 26886017 to 26886367 350 CpG island CpG island 8823
Tssr146974 17 26886235 to 26886248 13 - TSS region transcription start site region 146974
Gm41555 17 26896316 to 26900644 4328 - lncRNA gene predicted gene, 41555
D17Jcs124 17 26899109 to 26899294 185 DNA segment DNA segment, Chr 17, John C. Schimenti 124
Cpgi8824 17 26916704 to 26917719 1015 CpG island CpG island 8824
Kifc5b 17 26917091 to 26932579 15488 + protein coding gene kinesin family member C5B
Tssr143273 17 26917096 to 26917107 11 + TSS region transcription start site region 143273
Tssr143274 17 26917111 to 26917159 48 + TSS region transcription start site region 143274
Gm27775 17 26920962 to 26921019 57 + miRNA gene predicted gene, 27775
Cpgi8825 17 26932717 to 26933694 977 CpG island CpG island 8825
Tssr143275 17 26933043 to 26933060 17 + TSS region transcription start site region 143275
Tssr143276 17 26933070 to 26933158 88 + TSS region transcription start site region 143276
Phf1 17 26933127 to 26937890 4763 + protein coding gene PHD finger protein 1
Tssr143277 17 26933301 to 26933385 84 + TSS region transcription start site region 143277
Mir6968 17 26935472 to 26935539 67 + miRNA gene microRNA 6968
Tssr143278 17 26937971 to 26937979 8 + TSS region transcription start site region 143278
Cuta 17 26937973 to 26939478 1505 - protein coding gene cutA divalent cation tolerance homolog
Cpgi8826 17 26938728 to 26940260 1532 CpG island CpG island 8826
Tssr146975 17 26938804 to 26938816 12 - TSS region transcription start site region 146975
Tssr146976 17 26939083 to 26939108 25 - TSS region transcription start site region 146976
Tssr146977 17 26939198 to 26939213 15 - TSS region transcription start site region 146977
Tssr146978 17 26939244 to 26939258 14 - TSS region transcription start site region 146978
Tssr146979 17 26939263 to 26939307 44 - TSS region transcription start site region 146979
Tssr146980 17 26939371 to 26939397 26 - TSS region transcription start site region 146980
Tssr146981 17 26939413 to 26939427 14 - TSS region transcription start site region 146981
Tssr146982 17 26939439 to 26939463 24 - TSS region transcription start site region 146982
Tssr146983 17 26939464 to 26939525 61 - TSS region transcription start site region 146983
Tssr146984 17 26939543 to 26939554 11 - TSS region transcription start site region 146984
Tssr143279 17 26941230 to 26941270 40 + TSS region transcription start site region 143279
Tssr143280 17 26941277 to 26941316 39 + TSS region transcription start site region 143280
Syngap1 17 26941408 to 26972434 31026 + protein coding gene synaptic Ras GTPase activating protein 1 homolog (rat)
Tssr143281 17 26941420 to 26941464 44 + TSS region transcription start site region 143281
Cpgi8827 17 26946359 to 26947175 816 CpG island CpG island 8827
Mir3083 17 26948056 to 26948119 63 - miRNA gene microRNA 3083
Cpgi8828 17 26948312 to 26949568 1256 CpG island CpG island 8828
Tssr143282 17 26948401 to 26948428 27 + TSS region transcription start site region 143282
Tssr143283 17 26948616 to 26948640 24 + TSS region transcription start site region 143283
Tssr143284 17 26948646 to 26948686 40 + TSS region transcription start site region 143284