Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:25870641-26100772

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26694 17 25794894 to 25964784 169890 + lincRNA gene predicted gene, 26694
Cpgi8790 17 25874527 to 25876156 1629 CpG island CpG island 8790
n-TGccc7 17 25875088 to 25875158 70 + tRNA gene nuclear encoded tRNA glycine 7 (anticodon CCC)
Tssr143196 17 25875492 to 25875536 44 + TSS region transcription start site region 143196
Mettl26 17 25875500 to 25877163 1663 + protein coding gene methyltransferase like 26
Wfikkn1 17 25877630 to 25880305 2675 - protein coding gene WAP, FS, Ig, KU, and NTR-containing protein 1
Rab40c 17 25882114 to 25919714 37600 - protein coding gene Rab40C, member RAS oncogene family
Tssr5042 17 25901805 to 25901822 17 + TSS region transcription start site region 5042
Gm10012 17 25901856 to 25902227 371 - pseudogene predicted pseudogene 10012
D17Jcs49 17 25902705 to 25902939 234 DNA segment DNA segment, Chr 17, John C. Schimenti 49
Cpgi8791 17 25918904 to 25920842 1938 CpG island CpG island 8791
Gm16278 17 25919089 to 25935745 16656 + unclassified non-coding RNA gene predicted gene 16278
Tssr143197 17 25919341 to 25919368 27 + TSS region transcription start site region 143197
Tssr146876 17 25919676 to 25919740 64 - TSS region transcription start site region 146876
Pigq 17 25926420 to 25942877 16457 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class Q
Tssr146877 17 25930518 to 25930521 3 - TSS region transcription start site region 146877
Cpgi8792 17 25941585 to 25942423 838 CpG island CpG island 8792
Tssr146878 17 25941882 to 25941889 7 - TSS region transcription start site region 146878
Tssr146879 17 25941926 to 25941981 55 - TSS region transcription start site region 146879
Nhlrc4 17 25942233 to 25944931 2698 - protein coding gene NHL repeat containing 4
Tssr146880 17 25942821 to 25942856 35 - TSS region transcription start site region 146880
Tssr146881 17 25942860 to 25942865 5 - TSS region transcription start site region 146881
A930017K11Rik 17 25946387 to 25952565 6178 - protein coding gene RIKEN cDNA A930017K11 gene
Cpgi8793 17 25951181 to 25952575 1394 CpG island CpG island 8793
D630044L22Rik 17 25951472 to 25963610 12138 + protein coding gene RIKEN cDNA gene D630044L22 gene
Tssr146882 17 25952053 to 25952082 29 - TSS region transcription start site region 146882
Capn15 17 25958364 to 25985796 27432 - protein coding gene calpain 15
Tssr143198 17 25961738 to 25961767 29 + TSS region transcription start site region 143198
Tssr146883 17 25972084 to 25972088 4 - TSS region transcription start site region 146883
Tssr146884 17 25979887 to 25979898 11 - TSS region transcription start site region 146884
Tssr146885 17 25979936 to 25979950 14 - TSS region transcription start site region 146885
Cpgi8794 17 25985070 to 25986265 1195 CpG island CpG island 8794
Tssr146886 17 25985623 to 25985634 11 - TSS region transcription start site region 146886
Tssr146887 17 25985641 to 25985772 131 - TSS region transcription start site region 146887
Tssr146888 17 25985773 to 25985795 22 - TSS region transcription start site region 146888
1700022N22Rik 17 25985815 to 25988469 2654 + lincRNA gene RIKEN cDNA 1700022N22 gene
Tssr143199 17 25985825 to 25985834 9 + TSS region transcription start site region 143199
Rab11fip3 17 25989036 to 26069409 80373 - protein coding gene RAB11 family interacting protein 3 (class II)
Tssr146889 17 26004713 to 26004752 39 - TSS region transcription start site region 146889
Tssr146890 17 26004803 to 26004820 17 - TSS region transcription start site region 146890
Tssr146891 17 26004833 to 26004844 11 - TSS region transcription start site region 146891
Tssr146892 17 26004854 to 26004873 19 - TSS region transcription start site region 146892
Tssr146893 17 26004890 to 26004905 15 - TSS region transcription start site region 146893
Tssr146894 17 26008878 to 26008922 44 - TSS region transcription start site region 146894
Tssr146895 17 26019732 to 26019747 15 - TSS region transcription start site region 146895
Tssr146896 17 26021736 to 26021741 5 - TSS region transcription start site region 146896
Tssr146897 17 26021742 to 26021757 15 - TSS region transcription start site region 146897
Tssr146898 17 26021795 to 26021807 12 - TSS region transcription start site region 146898
Tssr146899 17 26021814 to 26021821 7 - TSS region transcription start site region 146899
Tssr146900 17 26021836 to 26021845 9 - TSS region transcription start site region 146900
Tssr146901 17 26021853 to 26021866 13 - TSS region transcription start site region 146901
Tssr146902 17 26021916 to 26021935 19 - TSS region transcription start site region 146902
Tssr146903 17 26021941 to 26021959 18 - TSS region transcription start site region 146903
Gm10204 17 26044310 to 26046852 2542 unclassified gene predicted gene 10204
Tssr146904 17 26058679 to 26058681 2 - TSS region transcription start site region 146904
Cpgi8795 17 26067468 to 26069891 2423 CpG island CpG island 8795
Tssr146905 17 26069475 to 26069550 75 - TSS region transcription start site region 146905
Tssr143200 17 26069635 to 26069639 4 + TSS region transcription start site region 143200
Gm17814 17 26073147 to 26074754 1607 + pseudogene predicted gene, 17814
Decr2 17 26081211 to 26090164 8953 - protein coding gene 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
Tssr146906 17 26081611 to 26081621 10 - TSS region transcription start site region 146906
Tssr146907 17 26082079 to 26082098 19 - TSS region transcription start site region 146907
Tssr5043 17 26087248 to 26087258 10 + TSS region transcription start site region 5043
Tssr143201 17 26087272 to 26087287 15 + TSS region transcription start site region 143201
Tssr146908 17 26087392 to 26087421 29 - TSS region transcription start site region 146908
Cpgi8796 17 26089896 to 26090518 622 CpG island CpG island 8796
Tssr146909 17 26090066 to 26090100 34 - TSS region transcription start site region 146909
Tssr146910 17 26090112 to 26090156 44 - TSS region transcription start site region 146910
Tssr146911 17 26090159 to 26090171 12 - TSS region transcription start site region 146911
Tssr146912 17 26090187 to 26090208 21 - TSS region transcription start site region 146912
Tssr146913 17 26090251 to 26090315 64 - TSS region transcription start site region 146913
Nme4 17 26091734 to 26095508 3774 - protein coding gene NME/NM23 nucleoside diphosphate kinase 4
Cpgi8797 17 26095097 to 26095663 566 CpG island CpG island 8797
Tssr146914 17 26095437 to 26095449 12 - TSS region transcription start site region 146914
Tssr146915 17 26095451 to 26095461 10 - TSS region transcription start site region 146915
Tssr146916 17 26095464 to 26095480 16 - TSS region transcription start site region 146916
Tssr146917 17 26095487 to 26095514 27 - TSS region transcription start site region 146917
Gm8186 17 26098872 to 26099257 385 - pseudogene predicted gene 8186
Tssr146918 17 26099257 to 26099259 2 - TSS region transcription start site region 146918