Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:25826420-26042877

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26694 17 25794894 to 25964784 169890 + lincRNA gene predicted gene, 26694
Wdr24 17 25823627 to 25828730 5103 + protein coding gene WD repeat domain 24
Tssr5041 17 25827862 to 25827910 48 + TSS region transcription start site region 5041
Cpgi8784 17 25828605 to 25829541 936 CpG island CpG island 8784
Tssr143191 17 25828791 to 25828826 35 + TSS region transcription start site region 143191
Tssr143192 17 25829036 to 25829076 40 + TSS region transcription start site region 143192
Jmjd8 17 25829043 to 25831843 2800 + protein coding gene jumonji domain containing 8
Stub1 17 25830636 to 25833361 2725 - protein coding gene STIP1 homology and U-Box containing protein 1
Mir3082 17 25831365 to 25831428 63 - miRNA gene microRNA 3082
Cpgi8785 17 25832087 to 25833826 1739 CpG island CpG island 8785
Tssr146863 17 25832868 to 25832877 9 - TSS region transcription start site region 146863
Tssr146864 17 25832890 to 25832966 76 - TSS region transcription start site region 146864
Tssr143193 17 25833107 to 25833154 47 + TSS region transcription start site region 143193
Tssr146865 17 25833365 to 25833402 37 - TSS region transcription start site region 146865
Rhbdl1 17 25834465 to 25837295 2830 - protein coding gene rhomboid like 1
Gm20683 17 25834465 to 25841763 7298 - protein coding gene predicted gene 20683
Cpgi8786 17 25836535 to 25837380 845 CpG island CpG island 8786
Tssr146866 17 25837109 to 25837199 90 - TSS region transcription start site region 146866
Rhot2 17 25838838 to 25844851 6013 - protein coding gene ras homolog family member T2
D17Jcs48 17 25843588 to 25843787 199 DNA segment DNA segment, Chr 17, John C. Schimenti 48
Cpgi8787 17 25844000 to 25844685 685 CpG island CpG island 8787
Tssr146867 17 25844419 to 25844428 9 - TSS region transcription start site region 146867
Tssr146868 17 25844444 to 25844472 28 - TSS region transcription start site region 146868
Tssr146869 17 25844488 to 25844503 15 - TSS region transcription start site region 146869
Tssr146870 17 25844514 to 25844565 51 - TSS region transcription start site region 146870
Wdr90 17 25844771 to 25861501 16730 - protein coding gene WD repeat domain 90
D17Aus57 17 25857486 to 25857659 173 DNA segment DNA segment, Chr 17, Austin 57
Cpgi8788 17 25860744 to 25861893 1149 CpG island CpG island 8788
Tssr146871 17 25861350 to 25861361 11 - TSS region transcription start site region 146871
Tssr146872 17 25861456 to 25861510 54 - TSS region transcription start site region 146872
Tssr143194 17 25861705 to 25861715 10 + TSS region transcription start site region 143194
Mcrip2 17 25863698 to 25868738 5040 - protein coding gene MAPK regulated corepressor interacting protein 2
Tssr143195 17 25865570 to 25865572 2 + TSS region transcription start site region 143195
Cpgi8789 17 25868032 to 25868943 911 CpG island CpG island 8789
Tssr146873 17 25868669 to 25868674 5 - TSS region transcription start site region 146873
Tssr146874 17 25868694 to 25868719 25 - TSS region transcription start site region 146874
Tssr146875 17 25868727 to 25868769 42 - TSS region transcription start site region 146875
Cpgi8790 17 25874527 to 25876156 1629 CpG island CpG island 8790
n-TGccc7 17 25875088 to 25875158 70 + tRNA gene nuclear encoded tRNA glycine 7 (anticodon CCC)
Tssr143196 17 25875492 to 25875536 44 + TSS region transcription start site region 143196
Mettl26 17 25875500 to 25877163 1663 + protein coding gene methyltransferase like 26
Wfikkn1 17 25877630 to 25880305 2675 - protein coding gene WAP, FS, Ig, KU, and NTR-containing protein 1
Rab40c 17 25882114 to 25919714 37600 - protein coding gene Rab40C, member RAS oncogene family
Tssr5042 17 25901805 to 25901822 17 + TSS region transcription start site region 5042
Gm10012 17 25901856 to 25902227 371 - pseudogene predicted pseudogene 10012
D17Jcs49 17 25902705 to 25902939 234 DNA segment DNA segment, Chr 17, John C. Schimenti 49
Cpgi8791 17 25918904 to 25920842 1938 CpG island CpG island 8791
Gm16278 17 25919089 to 25935745 16656 + unclassified non-coding RNA gene predicted gene 16278
Tssr143197 17 25919341 to 25919368 27 + TSS region transcription start site region 143197
Tssr146876 17 25919676 to 25919740 64 - TSS region transcription start site region 146876
Pigq 17 25926420 to 25942877 16457 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class Q
Tssr146877 17 25930518 to 25930521 3 - TSS region transcription start site region 146877
Cpgi8792 17 25941585 to 25942423 838 CpG island CpG island 8792
Tssr146878 17 25941882 to 25941889 7 - TSS region transcription start site region 146878
Tssr146879 17 25941926 to 25941981 55 - TSS region transcription start site region 146879
Nhlrc4 17 25942233 to 25944931 2698 - protein coding gene NHL repeat containing 4
Tssr146880 17 25942821 to 25942856 35 - TSS region transcription start site region 146880
Tssr146881 17 25942860 to 25942865 5 - TSS region transcription start site region 146881
A930017K11Rik 17 25946387 to 25952565 6178 - protein coding gene RIKEN cDNA A930017K11 gene
Cpgi8793 17 25951181 to 25952575 1394 CpG island CpG island 8793
D630044L22Rik 17 25951472 to 25963610 12138 + protein coding gene RIKEN cDNA gene D630044L22 gene
Tssr146882 17 25952053 to 25952082 29 - TSS region transcription start site region 146882
Capn15 17 25958364 to 25985796 27432 - protein coding gene calpain 15
Tssr143198 17 25961738 to 25961767 29 + TSS region transcription start site region 143198
Tssr146883 17 25972084 to 25972088 4 - TSS region transcription start site region 146883
Tssr146884 17 25979887 to 25979898 11 - TSS region transcription start site region 146884
Tssr146885 17 25979936 to 25979950 14 - TSS region transcription start site region 146885
Cpgi8794 17 25985070 to 25986265 1195 CpG island CpG island 8794
Tssr146886 17 25985623 to 25985634 11 - TSS region transcription start site region 146886
Tssr146887 17 25985641 to 25985772 131 - TSS region transcription start site region 146887
Tssr146888 17 25985773 to 25985795 22 - TSS region transcription start site region 146888
1700022N22Rik 17 25985815 to 25988469 2654 + lincRNA gene RIKEN cDNA 1700022N22 gene
Tssr143199 17 25985825 to 25985834 9 + TSS region transcription start site region 143199
Rab11fip3 17 25989036 to 26069409 80373 - protein coding gene RAB11 family interacting protein 3 (class II)
Tssr146889 17 26004713 to 26004752 39 - TSS region transcription start site region 146889
Tssr146890 17 26004803 to 26004820 17 - TSS region transcription start site region 146890
Tssr146891 17 26004833 to 26004844 11 - TSS region transcription start site region 146891
Tssr146892 17 26004854 to 26004873 19 - TSS region transcription start site region 146892
Tssr146893 17 26004890 to 26004905 15 - TSS region transcription start site region 146893
Tssr146894 17 26008878 to 26008922 44 - TSS region transcription start site region 146894
Tssr146895 17 26019732 to 26019747 15 - TSS region transcription start site region 146895
Tssr146896 17 26021736 to 26021741 5 - TSS region transcription start site region 146896
Tssr146897 17 26021742 to 26021757 15 - TSS region transcription start site region 146897
Tssr146898 17 26021795 to 26021807 12 - TSS region transcription start site region 146898
Tssr146899 17 26021814 to 26021821 7 - TSS region transcription start site region 146899
Tssr146900 17 26021836 to 26021845 9 - TSS region transcription start site region 146900
Tssr146901 17 26021853 to 26021866 13 - TSS region transcription start site region 146901
Tssr146902 17 26021916 to 26021935 19 - TSS region transcription start site region 146902
Tssr146903 17 26021941 to 26021959 18 - TSS region transcription start site region 146903