Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:25725115-30145124

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1316 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ceat1 17 12417795 to 26182159 13764364 QTL chronic experimental autoimmune thyroiditis 1
Del(17D17Jcs40-D17Mit198)7Jcs 17 24928286 to 27659245 2730959 chromosomal deletion deletion, Chr 17, John C Schimenti 7
Del(17D17Jcs41-D17Jcs15)8Jcs 17 25022791 to 27025780 2002989 chromosomal deletion deletion, Chr 17, John C Schimenti 8
Chtf18 17 25719030 to 25727438 8408 - protein coding gene CTF18, chromosome transmission fidelity factor 18
Cpgi8774 17 25726877 to 25727835 958 CpG island CpG island 8774
Tssr146846 17 25727344 to 25727363 19 - TSS region transcription start site region 146846
Tssr146847 17 25727364 to 25727426 62 - TSS region transcription start site region 146847
Tssr143173 17 25727726 to 25727797 71 + TSS region transcription start site region 143173
Rpusd1 17 25727751 to 25731456 3705 + protein coding gene RNA pseudouridylate synthase domain containing 1
Opfaq5 17 25731951 to 28773124 3041173 QTL open field activity QTL 5
Mslnl 17 25736040 to 25748330 12290 + protein coding gene mesothelin-like
Tssr5040 17 25736214 to 25736240 26 + TSS region transcription start site region 5040
Gm25083 17 25746788 to 25746879 91 - miRNA gene predicted gene, 25083
Tssr143174 17 25748613 to 25748622 9 + TSS region transcription start site region 143174
Msln 17 25748614 to 25754327 5713 - protein coding gene mesothelin
Tssr146848 17 25751113 to 25751132 19 - TSS region transcription start site region 146848
Tssr146849 17 25751522 to 25751568 46 - TSS region transcription start site region 146849
Tssr146850 17 25752352 to 25752385 33 - TSS region transcription start site region 146850
Tssr146851 17 25754048 to 25754069 21 - TSS region transcription start site region 146851
Tssr146852 17 25754225 to 25754240 15 - TSS region transcription start site region 146852
Tssr146853 17 25754327 to 25754338 11 - TSS region transcription start site region 146853
Tssr146854 17 25754343 to 25754382 39 - TSS region transcription start site region 146854
Tssr146855 17 25754516 to 25754521 5 - TSS region transcription start site region 146855
Tssr143175 17 25756653 to 25756665 12 + TSS region transcription start site region 143175
1700080C20Rik 17 25760201 to 25760521 320 unclassified gene RIKEN cDNA 1700080C20 gene
Gm41550 17 25767378 to 25772544 5166 + lncRNA gene predicted gene, 41550
Cpgi8775 17 25773453 to 25774090 637 CpG island CpG island 8775
Tssr143176 17 25773769 to 25773778 9 + TSS region transcription start site region 143176
Ciao3 17 25773776 to 25783332 9556 + protein coding gene cytosolic iron-sulfur assembly component 3
Tssr143177 17 25773787 to 25773824 37 + TSS region transcription start site region 143177
Haghl 17 25779843 to 25785670 5827 - protein coding gene hydroxyacylglutathione hydrolase-like
Mir6966 17 25780808 to 25780879 71 + miRNA gene microRNA 6966
Tssr146856 17 25785324 to 25785343 19 - TSS region transcription start site region 146856
Cpgi8776 17 25785336 to 25785721 385 CpG island CpG island 8776
Tssr146857 17 25785533 to 25785591 58 - TSS region transcription start site region 146857
Tssr143178 17 25786566 to 25786584 18 + TSS region transcription start site region 143178
Ccdc78 17 25786580 to 25790513 3933 + protein coding gene coiled-coil domain containing 78
Tssr143179 17 25786585 to 25786613 28 + TSS region transcription start site region 143179
Fam173a 17 25790508 to 25792284 1776 - protein coding gene family with sequence similarity 173, member A
Cpgi8777 17 25791548 to 25792697 1149 CpG island CpG island 8777
Tssr146858 17 25792347 to 25792380 33 - TSS region transcription start site region 146858
Tssr146859 17 25792383 to 25792401 18 - TSS region transcription start site region 146859
Metrn 17 25794571 to 25797045 2474 - protein coding gene meteorin, glial cell differentiation regulator
Gm26694 17 25794894 to 25964784 169890 + lincRNA gene predicted gene, 26694
Tssr146860 17 25795639 to 25795664 25 - TSS region transcription start site region 146860
Cpgi8778 17 25796132 to 25797361 1229 CpG island CpG island 8778
Tssr146861 17 25796964 to 25796981 17 - TSS region transcription start site region 146861
Tssr146862 17 25797032 to 25797075 43 - TSS region transcription start site region 146862
Gm41551 17 25803240 to 25808734 5494 + lncRNA gene predicted gene, 41551
Tssr143180 17 25803392 to 25803405 13 + TSS region transcription start site region 143180
Cpgi8779 17 25808257 to 25810195 1938 CpG island CpG island 8779
Tssr143181 17 25809012 to 25809032 20 + TSS region transcription start site region 143181
Fbxl16 17 25809085 to 25821244 12159 + protein coding gene F-box and leucine-rich repeat protein 16
Tssr143182 17 25809090 to 25809171 81 + TSS region transcription start site region 143182
Cpgi8780 17 25813426 to 25813884 458 CpG island CpG island 8780
Tssr143183 17 25814142 to 25814147 5 + TSS region transcription start site region 143183
Tssr143184 17 25817919 to 25817938 19 + TSS region transcription start site region 143184
Cpgi8781 17 25819272 to 25819895 623 CpG island CpG island 8781
Tssr143185 17 25819823 to 25819835 12 + TSS region transcription start site region 143185
Tssr143186 17 25820153 to 25820178 25 + TSS region transcription start site region 143186
Tssr143187 17 25820379 to 25820393 14 + TSS region transcription start site region 143187
Tssr143188 17 25820653 to 25820675 22 + TSS region transcription start site region 143188
Cpgi8782 17 25823523 to 25823880 357 CpG island CpG island 8782
Tssr143189 17 25823626 to 25823637 11 + TSS region transcription start site region 143189
Wdr24 17 25823627 to 25828730 5103 + protein coding gene WD repeat domain 24
Tssr143190 17 25823642 to 25823706 64 + TSS region transcription start site region 143190
Cpgi8783 17 25824079 to 25824495 416 CpG island CpG island 8783
Tssr5041 17 25827862 to 25827910 48 + TSS region transcription start site region 5041
Cpgi8784 17 25828605 to 25829541 936 CpG island CpG island 8784
Tssr143191 17 25828791 to 25828826 35 + TSS region transcription start site region 143191
Tssr143192 17 25829036 to 25829076 40 + TSS region transcription start site region 143192
Jmjd8 17 25829043 to 25831843 2800 + protein coding gene jumonji domain containing 8
Stub1 17 25830636 to 25833361 2725 - protein coding gene STIP1 homology and U-Box containing protein 1
Mir3082 17 25831365 to 25831428 63 - miRNA gene microRNA 3082
Cpgi8785 17 25832087 to 25833826 1739 CpG island CpG island 8785
Tssr146863 17 25832868 to 25832877 9 - TSS region transcription start site region 146863
Tssr146864 17 25832890 to 25832966 76 - TSS region transcription start site region 146864
Tssr143193 17 25833107 to 25833154 47 + TSS region transcription start site region 143193
Tssr146865 17 25833365 to 25833402 37 - TSS region transcription start site region 146865
Gm20683 17 25834465 to 25841763 7298 - protein coding gene predicted gene 20683
Rhbdl1 17 25834465 to 25837295 2830 - protein coding gene rhomboid like 1
Cpgi8786 17 25836535 to 25837380 845 CpG island CpG island 8786
Tssr146866 17 25837109 to 25837199 90 - TSS region transcription start site region 146866
Rhot2 17 25838838 to 25844851 6013 - protein coding gene ras homolog family member T2
D17Jcs48 17 25843588 to 25843787 199 DNA segment DNA segment, Chr 17, John C. Schimenti 48
Cpgi8787 17 25844000 to 25844685 685 CpG island CpG island 8787
Tssr146867 17 25844419 to 25844428 9 - TSS region transcription start site region 146867
Tssr146868 17 25844444 to 25844472 28 - TSS region transcription start site region 146868
Tssr146869 17 25844488 to 25844503 15 - TSS region transcription start site region 146869
Tssr146870 17 25844514 to 25844565 51 - TSS region transcription start site region 146870
Wdr90 17 25844771 to 25861501 16730 - protein coding gene WD repeat domain 90
D17Aus57 17 25857486 to 25857659 173 DNA segment DNA segment, Chr 17, Austin 57
Cpgi8788 17 25860744 to 25861893 1149 CpG island CpG island 8788
Tssr146871 17 25861350 to 25861361 11 - TSS region transcription start site region 146871
Tssr146872 17 25861456 to 25861510 54 - TSS region transcription start site region 146872
Tssr143194 17 25861705 to 25861715 10 + TSS region transcription start site region 143194
Mcrip2 17 25863698 to 25868738 5040 - protein coding gene MAPK regulated corepressor interacting protein 2
Tssr143195 17 25865570 to 25865572 2 + TSS region transcription start site region 143195
Cpgi8789 17 25868032 to 25868943 911 CpG island CpG island 8789
Tssr146873 17 25868669 to 25868674 5 - TSS region transcription start site region 146873
Tssr146874 17 25868694 to 25868719 25 - TSS region transcription start site region 146874
Tssr146875 17 25868727 to 25868769 42 - TSS region transcription start site region 146875
Cpgi8790 17 25874527 to 25876156 1629 CpG island CpG island 8790
n-TGccc7 17 25875088 to 25875158 70 + tRNA gene nuclear encoded tRNA glycine 7 (anticodon CCC)
Tssr143196 17 25875492 to 25875536 44 + TSS region transcription start site region 143196
Mettl26 17 25875500 to 25877163 1663 + protein coding gene methyltransferase like 26
Wfikkn1 17 25877630 to 25880305 2675 - protein coding gene WAP, FS, Ig, KU, and NTR-containing protein 1
Rab40c 17 25882114 to 25919714 37600 - protein coding gene Rab40C, member RAS oncogene family
Tssr5042 17 25901805 to 25901822 17 + TSS region transcription start site region 5042
Gm10012 17 25901856 to 25902227 371 - pseudogene predicted pseudogene 10012
D17Jcs49 17 25902705 to 25902939 234 DNA segment DNA segment, Chr 17, John C. Schimenti 49
Cpgi8791 17 25918904 to 25920842 1938 CpG island CpG island 8791
Gm16278 17 25919089 to 25935745 16656 + unclassified non-coding RNA gene predicted gene 16278
Tssr143197 17 25919341 to 25919368 27 + TSS region transcription start site region 143197
Tssr146876 17 25919676 to 25919740 64 - TSS region transcription start site region 146876
Pigq 17 25926420 to 25942877 16457 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class Q
Tssr146877 17 25930518 to 25930521 3 - TSS region transcription start site region 146877
Cpgi8792 17 25941585 to 25942423 838 CpG island CpG island 8792
Tssr146878 17 25941882 to 25941889 7 - TSS region transcription start site region 146878
Tssr146879 17 25941926 to 25941981 55 - TSS region transcription start site region 146879
Nhlrc4 17 25942233 to 25944931 2698 - protein coding gene NHL repeat containing 4
Tssr146880 17 25942821 to 25942856 35 - TSS region transcription start site region 146880
Tssr146881 17 25942860 to 25942865 5 - TSS region transcription start site region 146881
A930017K11Rik 17 25946387 to 25952565 6178 - protein coding gene RIKEN cDNA A930017K11 gene
Cpgi8793 17 25951181 to 25952575 1394 CpG island CpG island 8793
D630044L22Rik 17 25951472 to 25963610 12138 + protein coding gene RIKEN cDNA gene D630044L22 gene
Tssr146882 17 25952053 to 25952082 29 - TSS region transcription start site region 146882
Capn15 17 25958364 to 25985796 27432 - protein coding gene calpain 15
Tssr143198 17 25961738 to 25961767 29 + TSS region transcription start site region 143198
Tssr146883 17 25972084 to 25972088 4 - TSS region transcription start site region 146883
Tssr146884 17 25979887 to 25979898 11 - TSS region transcription start site region 146884
Tssr146885 17 25979936 to 25979950 14 - TSS region transcription start site region 146885
Cpgi8794 17 25985070 to 25986265 1195 CpG island CpG island 8794
Tssr146886 17 25985623 to 25985634 11 - TSS region transcription start site region 146886
Tssr146887 17 25985641 to 25985772 131 - TSS region transcription start site region 146887
Tssr146888 17 25985773 to 25985795 22 - TSS region transcription start site region 146888
1700022N22Rik 17 25985815 to 25988469 2654 + lincRNA gene RIKEN cDNA 1700022N22 gene
Tssr143199 17 25985825 to 25985834 9 + TSS region transcription start site region 143199
Rab11fip3 17 25989036 to 26069409 80373 - protein coding gene RAB11 family interacting protein 3 (class II)
Tssr146889 17 26004713 to 26004752 39 - TSS region transcription start site region 146889
Tssr146890 17 26004803 to 26004820 17 - TSS region transcription start site region 146890
Tssr146891 17 26004833 to 26004844 11 - TSS region transcription start site region 146891
Tssr146892 17 26004854 to 26004873 19 - TSS region transcription start site region 146892
Tssr146893 17 26004890 to 26004905 15 - TSS region transcription start site region 146893
Tssr146894 17 26008878 to 26008922 44 - TSS region transcription start site region 146894
Tssr146895 17 26019732 to 26019747 15 - TSS region transcription start site region 146895
Tssr146896 17 26021736 to 26021741 5 - TSS region transcription start site region 146896
Tssr146897 17 26021742 to 26021757 15 - TSS region transcription start site region 146897
Tssr146898 17 26021795 to 26021807 12 - TSS region transcription start site region 146898
Tssr146899 17 26021814 to 26021821 7 - TSS region transcription start site region 146899
Tssr146900 17 26021836 to 26021845 9 - TSS region transcription start site region 146900
Tssr146901 17 26021853 to 26021866 13 - TSS region transcription start site region 146901
Tssr146902 17 26021916 to 26021935 19 - TSS region transcription start site region 146902
Tssr146903 17 26021941 to 26021959 18 - TSS region transcription start site region 146903
Gm10204 17 26044310 to 26046852 2542 unclassified gene predicted gene 10204
Tssr146904 17 26058679 to 26058681 2 - TSS region transcription start site region 146904
Cpgi8795 17 26067468 to 26069891 2423 CpG island CpG island 8795
Tssr146905 17 26069475 to 26069550 75 - TSS region transcription start site region 146905
Tssr143200 17 26069635 to 26069639 4 + TSS region transcription start site region 143200
Gm17814 17 26073147 to 26074754 1607 + pseudogene predicted gene, 17814
Decr2 17 26081211 to 26090164 8953 - protein coding gene 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
Tssr146906 17 26081611 to 26081621 10 - TSS region transcription start site region 146906
Tssr146907 17 26082079 to 26082098 19 - TSS region transcription start site region 146907
Tssr5043 17 26087248 to 26087258 10 + TSS region transcription start site region 5043
Tssr143201 17 26087272 to 26087287 15 + TSS region transcription start site region 143201
Tssr146908 17 26087392 to 26087421 29 - TSS region transcription start site region 146908
Cpgi8796 17 26089896 to 26090518 622 CpG island CpG island 8796
Tssr146909 17 26090066 to 26090100 34 - TSS region transcription start site region 146909
Tssr146910 17 26090112 to 26090156 44 - TSS region transcription start site region 146910
Tssr146911 17 26090159 to 26090171 12 - TSS region transcription start site region 146911
Tssr146912 17 26090187 to 26090208 21 - TSS region transcription start site region 146912
Tssr146913 17 26090251 to 26090315 64 - TSS region transcription start site region 146913
Nme4 17 26091734 to 26095508 3774 - protein coding gene NME/NM23 nucleoside diphosphate kinase 4
Cpgi8797 17 26095097 to 26095663 566 CpG island CpG island 8797
Tssr146914 17 26095437 to 26095449 12 - TSS region transcription start site region 146914
Tssr146915 17 26095451 to 26095461 10 - TSS region transcription start site region 146915
Tssr146916 17 26095464 to 26095480 16 - TSS region transcription start site region 146916
Tssr146917 17 26095487 to 26095514 27 - TSS region transcription start site region 146917
Gm8186 17 26098872 to 26099257 385 - pseudogene predicted gene 8186
Tssr146918 17 26099257 to 26099259 2 - TSS region transcription start site region 146918
Tssr143202 17 26111394 to 26111423 29 + TSS region transcription start site region 143202
Cpgi8798 17 26112930 to 26114042 1112 CpG island CpG island 8798
Tssr143203 17 26113286 to 26113363 77 + TSS region transcription start site region 143203
Tmem8 17 26113316 to 26123254 9938 + protein coding gene transmembrane protein 8
Tssr146919 17 26113551 to 26113591 40 - TSS region transcription start site region 146919
Tssr143204 17 26113678 to 26113706 28 + TSS region transcription start site region 143204
Tssr143205 17 26113710 to 26113719 9 + TSS region transcription start site region 143205
Tssr143206 17 26113788 to 26113807 19 + TSS region transcription start site region 143206
Tssr143207 17 26113810 to 26113815 5 + TSS region transcription start site region 143207
Tssr143208 17 26116792 to 26116803 11 + TSS region transcription start site region 143208
Cpgi8799 17 26120067 to 26120528 461 CpG island CpG island 8799
Cpgi8800 17 26123294 to 26123998 704 CpG island CpG island 8800
Tssr143209 17 26123504 to 26123513 9 + TSS region transcription start site region 143209
Tssr143210 17 26123514 to 26123554 40 + TSS region transcription start site region 143210
Mrpl28 17 26123520 to 26126613 3093 + protein coding gene mitochondrial ribosomal protein L28
Tssr143211 17 26123566 to 26123579 13 + TSS region transcription start site region 143211
Tssr143212 17 26131313 to 26131327 14 + TSS region transcription start site region 143212
Gm46600 17 26136785 to 26138541 1756 - lncRNA gene predicted gene, 46600
Cpgi8801 17 26138278 to 26139548 1270 CpG island CpG island 8801
Tssr143213 17 26138661 to 26138769 108 + TSS region transcription start site region 143213