Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:25708769-25838778

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8773 17 25716740 to 25718130 1390 CpG island CpG island 8773
Gng13 17 25717172 to 25719102 1930 + protein coding gene guanine nucleotide binding protein (G protein), gamma 13
Tssr143169 17 25717188 to 25717213 25 + TSS region transcription start site region 143169
Tssr143170 17 25717214 to 25717236 22 + TSS region transcription start site region 143170
Tssr143171 17 25717489 to 25717551 62 + TSS region transcription start site region 143171
Tssr143172 17 25718225 to 25718231 6 + TSS region transcription start site region 143172
Chtf18 17 25719030 to 25727438 8408 - protein coding gene CTF18, chromosome transmission fidelity factor 18
Cpgi8774 17 25726877 to 25727835 958 CpG island CpG island 8774
Tssr146846 17 25727344 to 25727363 19 - TSS region transcription start site region 146846
Tssr146847 17 25727364 to 25727426 62 - TSS region transcription start site region 146847
Tssr143173 17 25727726 to 25727797 71 + TSS region transcription start site region 143173
Rpusd1 17 25727751 to 25731456 3705 + protein coding gene RNA pseudouridylate synthase domain containing 1
Opfaq5 17 25731951 to 28773124 3041173 QTL open field activity QTL 5
Mslnl 17 25736040 to 25748330 12290 + protein coding gene mesothelin-like
Tssr5040 17 25736214 to 25736240 26 + TSS region transcription start site region 5040
Gm25083 17 25746788 to 25746879 91 - miRNA gene predicted gene, 25083
Tssr143174 17 25748613 to 25748622 9 + TSS region transcription start site region 143174
Msln 17 25748614 to 25754327 5713 - protein coding gene mesothelin
Tssr146848 17 25751113 to 25751132 19 - TSS region transcription start site region 146848
Tssr146849 17 25751522 to 25751568 46 - TSS region transcription start site region 146849
Tssr146850 17 25752352 to 25752385 33 - TSS region transcription start site region 146850
Tssr146851 17 25754048 to 25754069 21 - TSS region transcription start site region 146851
Tssr146852 17 25754225 to 25754240 15 - TSS region transcription start site region 146852
Tssr146853 17 25754327 to 25754338 11 - TSS region transcription start site region 146853
Tssr146854 17 25754343 to 25754382 39 - TSS region transcription start site region 146854
Tssr146855 17 25754516 to 25754521 5 - TSS region transcription start site region 146855
Tssr143175 17 25756653 to 25756665 12 + TSS region transcription start site region 143175
1700080C20Rik 17 25760201 to 25760521 320 unclassified gene RIKEN cDNA 1700080C20 gene
Gm41550 17 25767378 to 25772544 5166 + lncRNA gene predicted gene, 41550
Cpgi8775 17 25773453 to 25774090 637 CpG island CpG island 8775
Tssr143176 17 25773769 to 25773778 9 + TSS region transcription start site region 143176
Ciao3 17 25773776 to 25783332 9556 + protein coding gene cytosolic iron-sulfur assembly component 3
Tssr143177 17 25773787 to 25773824 37 + TSS region transcription start site region 143177
Haghl 17 25779843 to 25785670 5827 - protein coding gene hydroxyacylglutathione hydrolase-like
Mir6966 17 25780808 to 25780879 71 + miRNA gene microRNA 6966
Tssr146856 17 25785324 to 25785343 19 - TSS region transcription start site region 146856
Cpgi8776 17 25785336 to 25785721 385 CpG island CpG island 8776
Tssr146857 17 25785533 to 25785591 58 - TSS region transcription start site region 146857
Tssr143178 17 25786566 to 25786584 18 + TSS region transcription start site region 143178
Ccdc78 17 25786580 to 25790513 3933 + protein coding gene coiled-coil domain containing 78
Tssr143179 17 25786585 to 25786613 28 + TSS region transcription start site region 143179
Fam173a 17 25790508 to 25792284 1776 - protein coding gene family with sequence similarity 173, member A
Cpgi8777 17 25791548 to 25792697 1149 CpG island CpG island 8777
Tssr146858 17 25792347 to 25792380 33 - TSS region transcription start site region 146858
Tssr146859 17 25792383 to 25792401 18 - TSS region transcription start site region 146859
Metrn 17 25794571 to 25797045 2474 - protein coding gene meteorin, glial cell differentiation regulator
Gm26694 17 25794894 to 25964784 169890 + lincRNA gene predicted gene, 26694
Tssr146860 17 25795639 to 25795664 25 - TSS region transcription start site region 146860
Cpgi8778 17 25796132 to 25797361 1229 CpG island CpG island 8778
Tssr146861 17 25796964 to 25796981 17 - TSS region transcription start site region 146861
Tssr146862 17 25797032 to 25797075 43 - TSS region transcription start site region 146862
Gm41551 17 25803240 to 25808734 5494 + lncRNA gene predicted gene, 41551
Tssr143180 17 25803392 to 25803405 13 + TSS region transcription start site region 143180
Cpgi8779 17 25808257 to 25810195 1938 CpG island CpG island 8779
Tssr143181 17 25809012 to 25809032 20 + TSS region transcription start site region 143181
Fbxl16 17 25809085 to 25821244 12159 + protein coding gene F-box and leucine-rich repeat protein 16
Tssr143182 17 25809090 to 25809171 81 + TSS region transcription start site region 143182
Cpgi8780 17 25813426 to 25813884 458 CpG island CpG island 8780
Tssr143183 17 25814142 to 25814147 5 + TSS region transcription start site region 143183
Tssr143184 17 25817919 to 25817938 19 + TSS region transcription start site region 143184
Cpgi8781 17 25819272 to 25819895 623 CpG island CpG island 8781
Tssr143185 17 25819823 to 25819835 12 + TSS region transcription start site region 143185
Tssr143186 17 25820153 to 25820178 25 + TSS region transcription start site region 143186
Tssr143187 17 25820379 to 25820393 14 + TSS region transcription start site region 143187
Tssr143188 17 25820653 to 25820675 22 + TSS region transcription start site region 143188
Cpgi8782 17 25823523 to 25823880 357 CpG island CpG island 8782
Tssr143189 17 25823626 to 25823637 11 + TSS region transcription start site region 143189
Wdr24 17 25823627 to 25828730 5103 + protein coding gene WD repeat domain 24
Tssr143190 17 25823642 to 25823706 64 + TSS region transcription start site region 143190
Cpgi8783 17 25824079 to 25824495 416 CpG island CpG island 8783
Tssr5041 17 25827862 to 25827910 48 + TSS region transcription start site region 5041
Cpgi8784 17 25828605 to 25829541 936 CpG island CpG island 8784
Tssr143191 17 25828791 to 25828826 35 + TSS region transcription start site region 143191
Tssr143192 17 25829036 to 25829076 40 + TSS region transcription start site region 143192
Jmjd8 17 25829043 to 25831843 2800 + protein coding gene jumonji domain containing 8
Stub1 17 25830636 to 25833361 2725 - protein coding gene STIP1 homology and U-Box containing protein 1
Mir3082 17 25831365 to 25831428 63 - miRNA gene microRNA 3082
Cpgi8785 17 25832087 to 25833826 1739 CpG island CpG island 8785
Tssr146863 17 25832868 to 25832877 9 - TSS region transcription start site region 146863
Tssr146864 17 25832890 to 25832966 76 - TSS region transcription start site region 146864
Tssr143193 17 25833107 to 25833154 47 + TSS region transcription start site region 143193
Tssr146865 17 25833365 to 25833402 37 - TSS region transcription start site region 146865
Rhbdl1 17 25834465 to 25837295 2830 - protein coding gene rhomboid like 1
Gm20683 17 25834465 to 25841763 7298 - protein coding gene predicted gene 20683
Cpgi8786 17 25836535 to 25837380 845 CpG island CpG island 8786
Tssr146866 17 25837109 to 25837199 90 - TSS region transcription start site region 146866