Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:25509776-25790725

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8767 17 25518204 to 25518562 358 CpG island CpG island 8767
Tssr143164 17 25518468 to 25518484 16 + TSS region transcription start site region 143164
Gm33727 17 25518585 to 25522565 3980 + lncRNA gene predicted gene, 33727
Gm50025 17 25531437 to 25533045 1608 - lincRNA gene predicted gene, 50025
Gm33801 17 25537017 to 25538938 1921 - lncRNA gene predicted gene, 33801
Cpgi8768 17 25539717 to 25539908 191 CpG island CpG island 8768
Rpsa-ps6 17 25548903 to 25549489 586 - pseudogene ribosomal protein SA, pseudogene 6
Gm50026 17 25552048 to 25561213 9165 - lincRNA gene predicted gene, 50026
Cpgi8769 17 25556293 to 25556901 608 CpG island CpG island 8769
Sox8 17 25565893 to 25570686 4793 - protein coding gene SRY (sex determining region Y)-box 8
Tssr146844 17 25566017 to 25566022 5 - TSS region transcription start site region 146844
Cpgi8770 17 25567410 to 25568030 620 CpG island CpG island 8770
Cpgi8771 17 25569793 to 25571612 1819 CpG island CpG island 8771
Tssr146845 17 25570678 to 25570694 16 - TSS region transcription start site region 146845
2810468N07Rik 17 25570811 to 25575043 4232 + lncRNA gene RIKEN cDNA 2810468N07 gene
Tssr143165 17 25570822 to 25570848 26 + TSS region transcription start site region 143165
Tssr143166 17 25570874 to 25570931 57 + TSS region transcription start site region 143166
Tssr143167 17 25574420 to 25574425 5 + TSS region transcription start site region 143167
Cpgi8772 17 25578871 to 25579572 701 CpG island CpG island 8772
Tssr143168 17 25579161 to 25579209 48 + TSS region transcription start site region 143168
Lmf1 17 25579174 to 25662831 83657 + protein coding gene lipase maturation factor 1
D17Jcs46 17 25586399 to 25586706 307 DNA segment DNA segment, Chr 17, John C. Schimenti 46
2610529L02Rik 17 25649776 to 25650725 949 unclassified gene RIKEN cDNA 2610529L02 gene
4930541O19Rik 17 25665376 to 25698911 33535 unclassified gene RIKEN cDNA 4930541O19 gene
D17Jcs47 17 25690475 to 25690702 227 DNA segment DNA segment, Chr 17, John C. Schimenti 47
Gm22645 17 25694114 to 25694220 106 - snRNA gene predicted gene, 22645
Gm5836 17 25705049 to 25705819 770 + pseudogene predicted gene 5836
Cpgi8773 17 25716740 to 25718130 1390 CpG island CpG island 8773
Gng13 17 25717172 to 25719102 1930 + protein coding gene guanine nucleotide binding protein (G protein), gamma 13
Tssr143169 17 25717188 to 25717213 25 + TSS region transcription start site region 143169
Tssr143170 17 25717214 to 25717236 22 + TSS region transcription start site region 143170
Tssr143171 17 25717489 to 25717551 62 + TSS region transcription start site region 143171
Tssr143172 17 25718225 to 25718231 6 + TSS region transcription start site region 143172
Chtf18 17 25719030 to 25727438 8408 - protein coding gene CTF18, chromosome transmission fidelity factor 18
Cpgi8774 17 25726877 to 25727835 958 CpG island CpG island 8774
Tssr146846 17 25727344 to 25727363 19 - TSS region transcription start site region 146846
Tssr146847 17 25727364 to 25727426 62 - TSS region transcription start site region 146847
Tssr143173 17 25727726 to 25727797 71 + TSS region transcription start site region 143173
Rpusd1 17 25727751 to 25731456 3705 + protein coding gene RNA pseudouridylate synthase domain containing 1
Opfaq5 17 25731951 to 28773124 3041173 QTL open field activity QTL 5
Mslnl 17 25736040 to 25748330 12290 + protein coding gene mesothelin-like
Tssr5040 17 25736214 to 25736240 26 + TSS region transcription start site region 5040
Gm25083 17 25746788 to 25746879 91 - miRNA gene predicted gene, 25083
Tssr143174 17 25748613 to 25748622 9 + TSS region transcription start site region 143174
Msln 17 25748614 to 25754327 5713 - protein coding gene mesothelin
Tssr146848 17 25751113 to 25751132 19 - TSS region transcription start site region 146848
Tssr146849 17 25751522 to 25751568 46 - TSS region transcription start site region 146849
Tssr146850 17 25752352 to 25752385 33 - TSS region transcription start site region 146850
Tssr146851 17 25754048 to 25754069 21 - TSS region transcription start site region 146851
Tssr146852 17 25754225 to 25754240 15 - TSS region transcription start site region 146852
Tssr146853 17 25754327 to 25754338 11 - TSS region transcription start site region 146853
Tssr146854 17 25754343 to 25754382 39 - TSS region transcription start site region 146854
Tssr146855 17 25754516 to 25754521 5 - TSS region transcription start site region 146855
Tssr143175 17 25756653 to 25756665 12 + TSS region transcription start site region 143175
1700080C20Rik 17 25760201 to 25760521 320 unclassified gene RIKEN cDNA 1700080C20 gene
Gm41550 17 25767378 to 25772544 5166 + lncRNA gene predicted gene, 41550
Cpgi8775 17 25773453 to 25774090 637 CpG island CpG island 8775
Tssr143176 17 25773769 to 25773778 9 + TSS region transcription start site region 143176
Ciao3 17 25773776 to 25783332 9556 + protein coding gene cytosolic iron-sulfur assembly component 3
Tssr143177 17 25773787 to 25773824 37 + TSS region transcription start site region 143177
Haghl 17 25779843 to 25785670 5827 - protein coding gene hydroxyacylglutathione hydrolase-like
Mir6966 17 25780808 to 25780879 71 + miRNA gene microRNA 6966
Tssr146856 17 25785324 to 25785343 19 - TSS region transcription start site region 146856
Cpgi8776 17 25785336 to 25785721 385 CpG island CpG island 8776
Tssr146857 17 25785533 to 25785591 58 - TSS region transcription start site region 146857
Tssr143178 17 25786566 to 25786584 18 + TSS region transcription start site region 143178
Ccdc78 17 25786580 to 25790513 3933 + protein coding gene coiled-coil domain containing 78
Tssr143179 17 25786585 to 25786613 28 + TSS region transcription start site region 143179
Fam173a 17 25790508 to 25792284 1776 - protein coding gene family with sequence similarity 173, member A