Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:25444793-25696612

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rtmq1 17 22681055 to 25502498 2821443 QTL renal tumor modifier QTL 1
Tssr143159 17 25453719 to 25453742 23 + TSS region transcription start site region 143159
Tssr143160 17 25454527 to 25454553 26 + TSS region transcription start site region 143160
Tekt4 17 25454675 to 25476602 21927 + protein coding gene tektin 4
Tssr143161 17 25471564 to 25471637 73 + TSS region transcription start site region 143161
Tssr143162 17 25471673 to 25471688 15 + TSS region transcription start site region 143162
Tssr143163 17 25471703 to 25471717 14 + TSS region transcription start site region 143163
Cpgi8764 17 25471759 to 25472289 530 CpG island CpG island 8764
Cpgi8765 17 25474437 to 25475078 641 CpG island CpG island 8765
Sstr5 17 25489875 to 25497288 7413 - protein coding gene somatostatin receptor 5
Cpgi8766 17 25496530 to 25497305 775 CpG island CpG island 8766
D17Jcs45 17 25498932 to 25499179 247 DNA segment DNA segment, Chr 17, John C. Schimenti 45
Cpgi8767 17 25518204 to 25518562 358 CpG island CpG island 8767
Tssr143164 17 25518468 to 25518484 16 + TSS region transcription start site region 143164
Gm33727 17 25518585 to 25522565 3980 + lncRNA gene predicted gene, 33727
Gm50025 17 25531437 to 25533045 1608 - lincRNA gene predicted gene, 50025
Gm33801 17 25537017 to 25538938 1921 - lncRNA gene predicted gene, 33801
Cpgi8768 17 25539717 to 25539908 191 CpG island CpG island 8768
Rpsa-ps6 17 25548903 to 25549489 586 - pseudogene ribosomal protein SA, pseudogene 6
Gm50026 17 25552048 to 25561213 9165 - lincRNA gene predicted gene, 50026
Cpgi8769 17 25556293 to 25556901 608 CpG island CpG island 8769
Sox8 17 25565893 to 25570686 4793 - protein coding gene SRY (sex determining region Y)-box 8
Tssr146844 17 25566017 to 25566022 5 - TSS region transcription start site region 146844
Cpgi8770 17 25567410 to 25568030 620 CpG island CpG island 8770
Cpgi8771 17 25569793 to 25571612 1819 CpG island CpG island 8771
Tssr146845 17 25570678 to 25570694 16 - TSS region transcription start site region 146845
2810468N07Rik 17 25570811 to 25575043 4232 + lncRNA gene RIKEN cDNA 2810468N07 gene
Tssr143165 17 25570822 to 25570848 26 + TSS region transcription start site region 143165
Tssr143166 17 25570874 to 25570931 57 + TSS region transcription start site region 143166
Tssr143167 17 25574420 to 25574425 5 + TSS region transcription start site region 143167
Cpgi8772 17 25578871 to 25579572 701 CpG island CpG island 8772
Tssr143168 17 25579161 to 25579209 48 + TSS region transcription start site region 143168
Lmf1 17 25579174 to 25662831 83657 + protein coding gene lipase maturation factor 1
D17Jcs46 17 25586399 to 25586706 307 DNA segment DNA segment, Chr 17, John C. Schimenti 46
2610529L02Rik 17 25649776 to 25650725 949 unclassified gene RIKEN cDNA 2610529L02 gene
4930541O19Rik 17 25665376 to 25698911 33535 unclassified gene RIKEN cDNA 4930541O19 gene
D17Jcs47 17 25690475 to 25690702 227 DNA segment DNA segment, Chr 17, John C. Schimenti 47
Gm22645 17 25694114 to 25694220 106 - snRNA gene predicted gene, 22645