Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:25135514-25376752

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clcn7 17 25133391 to 25162104 28713 + protein coding gene chloride channel, voltage-sensitive 7
Tssr143133 17 25135946 to 25135951 5 + TSS region transcription start site region 143133
Tssr143134 17 25136420 to 25136465 45 + TSS region transcription start site region 143134
Tssr146814 17 25136468 to 25136479 11 - TSS region transcription start site region 146814
Tssr146815 17 25136492 to 25136507 15 - TSS region transcription start site region 146815
Tssr143135 17 25136608 to 25136617 9 + TSS region transcription start site region 143135
Tssr143136 17 25136660 to 25136664 4 + TSS region transcription start site region 143136
Tssr143137 17 25136706 to 25136719 13 + TSS region transcription start site region 143137
Tssr143138 17 25139928 to 25139938 10 + TSS region transcription start site region 143138
Tssr146816 17 25140286 to 25140298 12 - TSS region transcription start site region 146816
Tssr146817 17 25140322 to 25140330 8 - TSS region transcription start site region 146817
Tssr143139 17 25145566 to 25145615 49 + TSS region transcription start site region 143139
Tssr143140 17 25159654 to 25159699 45 + TSS region transcription start site region 143140
Tssr143141 17 25162441 to 25162456 15 + TSS region transcription start site region 143141
Ccdc154 17 25162461 to 25171913 9452 + protein coding gene coiled-coil domain containing 154
Gm38655 17 25172897 to 25175471 2574 - protein coding gene predicted gene, 38655
4930568E02Rik 17 25183813 to 25184459 646 unclassified gene RIKEN cDNA 4930568E02 gene
Cpgi8755 17 25184003 to 25185296 1293 CpG island CpG island 8755
Tssr146818 17 25184382 to 25184402 20 - TSS region transcription start site region 146818
Tssr146819 17 25184404 to 25184468 64 - TSS region transcription start site region 146819
Tssr5037 17 25184558 to 25184563 5 + TSS region transcription start site region 5037
BC003965 17 25184561 to 25187662 3101 + protein coding gene cDNA sequence BC003965
Tssr143142 17 25184564 to 25184602 38 + TSS region transcription start site region 143142
Tssr143143 17 25184610 to 25184618 8 + TSS region transcription start site region 143143
Cpgi8756 17 25187863 to 25189667 1804 CpG island CpG island 8756
Tssr143144 17 25188380 to 25188418 38 + TSS region transcription start site region 143144
Unkl 17 25188397 to 25234443 46046 + protein coding gene unkempt family like zinc finger
D17Jcs43 17 25189209 to 25189395 186 DNA segment DNA segment, Chr 17, John C. Schimenti 43
Tssr146820 17 25211898 to 25211910 12 - TSS region transcription start site region 146820
Tssr143145 17 25212845 to 25212849 4 + TSS region transcription start site region 143145
Cpgi8757 17 25221986 to 25222165 179 CpG island CpG island 8757
Cpgi8758 17 25222710 to 25222897 187 CpG island CpG island 8758
Tssr146821 17 25224693 to 25224701 8 - TSS region transcription start site region 146821
Tssr143146 17 25228176 to 25228186 10 + TSS region transcription start site region 143146
Gnptg 17 25234317 to 25240170 5853 - protein coding gene N-acetylglucosamine-1-phosphotransferase, gamma subunit
Cpgi8759 17 25239688 to 25240744 1056 CpG island CpG island 8759
Tssr146822 17 25240112 to 25240158 46 - TSS region transcription start site region 146822
Tssr143147 17 25240166 to 25240220 54 + TSS region transcription start site region 143147
Tsr3 17 25240170 to 25242798 2628 + protein coding gene TSR3 20S rRNA accumulation
Tssr143148 17 25240225 to 25240245 20 + TSS region transcription start site region 143148
Baiap3 17 25242659 to 25256364 13705 - protein coding gene BAI1-associated protein 3
Mir3547 17 25245551 to 25245638 87 - miRNA gene microRNA 3547
Tssr146823 17 25248132 to 25248150 18 - TSS region transcription start site region 146823
Cpgi8760 17 25248328 to 25248563 235 CpG island CpG island 8760
Cpgi8761 17 25255514 to 25256752 1238 CpG island CpG island 8761
Tssr146824 17 25256274 to 25256293 19 - TSS region transcription start site region 146824
Ube2i 17 25261916 to 25274622 12706 - protein coding gene ubiquitin-conjugating enzyme E2I
Cpgi8762 17 25272888 to 25274405 1517 CpG island CpG island 8762
Tssr146825 17 25273254 to 25273265 11 - TSS region transcription start site region 146825
Tssr146826 17 25273289 to 25273301 12 - TSS region transcription start site region 146826
Tssr146827 17 25273366 to 25273383 17 - TSS region transcription start site region 146827
Tssr146828 17 25273390 to 25273443 53 - TSS region transcription start site region 146828
Tssr146829 17 25273506 to 25273526 20 - TSS region transcription start site region 146829
Tssr146830 17 25273541 to 25273557 16 - TSS region transcription start site region 146830
Tssr146831 17 25273562 to 25273638 76 - TSS region transcription start site region 146831
Tssr146832 17 25273799 to 25273855 56 - TSS region transcription start site region 146832
Tssr146833 17 25273861 to 25273886 25 - TSS region transcription start site region 146833
Gm17801 17 25274124 to 25275528 1404 + lncRNA gene predicted gene, 17801
Tssr146834 17 25274275 to 25274296 21 - TSS region transcription start site region 146834
Tssr146835 17 25274299 to 25274317 18 - TSS region transcription start site region 146835
Tssr143149 17 25274363 to 25274396 33 + TSS region transcription start site region 143149
Tssr143150 17 25298389 to 25298403 14 + TSS region transcription start site region 143150
Prss34 17 25298394 to 25300165 1771 + protein coding gene protease, serine 34
Gm25921 17 25306112 to 25306248 136 + snoRNA gene predicted gene, 25921
Tssr143151 17 25308642 to 25308647 5 + TSS region transcription start site region 143151
Prss28 17 25308646 to 25311876 3230 + protein coding gene protease, serine 28
Tssr5038 17 25317560 to 25317586 26 + TSS region transcription start site region 5038
Tssr143152 17 25318649 to 25318657 8 + TSS region transcription start site region 143152
Prss29 17 25318654 to 25322684 4030 + protein coding gene protease, serine 29
D17Mit26 17 25319036 to 25319178 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 26
D17Aus126 17 25319044 to 25319138 94 DNA segment DNA segment, Chr 17, Austin 126
Gm5430 17 25326612 to 25327526 914 - pseudogene predicted gene 5430
Gm50085 17 25330692 to 25332675 1983 + pseudogene predicted gene, 50085
D17Jcs44 17 25341521 to 25341757 236 DNA segment DNA segment, Chr 17, John C. Schimenti 44
Tpsab1 17 25343245 to 25345562 2317 - protein coding gene tryptase alpha/beta 1
Tssr146836 17 25345559 to 25345563 4 - TSS region transcription start site region 146836
Skull24 17 25365940 to 25366175 235 QTL skull morphology 24
Bbaa28 17 25365940 to 43665344 18299404 QTL B.burgdorferi-associated arthritis 28
Cd8mts5 17 25365940 to 25366175 235 QTL CD8 memory T cell subset 5
D17Mit46 17 25365940 to 25366175 235 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 46
Tssr143153 17 25366280 to 25366312 32 + TSS region transcription start site region 143153
Tpsb2 17 25366303 to 25368096 1793 + protein coding gene tryptase beta 2
Tssr143154 17 25366315 to 25366328 13 + TSS region transcription start site region 143154
Tssr143155 17 25369267 to 25369280 13 + TSS region transcription start site region 143155
Tpsg1 17 25369273 to 25374442 5169 + protein coding gene tryptase gamma 1
Tssr143156 17 25369328 to 25369337 9 + TSS region transcription start site region 143156
Tssr143157 17 25370550 to 25370566 16 + TSS region transcription start site region 143157
Tssr143158 17 25370575 to 25370599 24 + TSS region transcription start site region 143158
Tssr5039 17 25370614 to 25370633 19 + TSS region transcription start site region 5039
Cacna1h 17 25374285 to 25433783 59498 - protein coding gene calcium channel, voltage-dependent, T type, alpha 1H subunit