Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:25085623-26885634

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545 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ceat1 17 12417795 to 26182159 13764364 QTL chronic experimental autoimmune thyroiditis 1
Rtmq1 17 22681055 to 25502498 2821443 QTL renal tumor modifier QTL 1
Ift140 17 25016085 to 25099495 83410 + protein coding gene intraflagellar transport 140
Tssr143125 17 25086943 to 25086985 42 + TSS region transcription start site region 143125
Tssr143126 17 25089375 to 25089384 9 + TSS region transcription start site region 143126
Tssr143127 17 25089389 to 25089441 52 + TSS region transcription start site region 143127
Tssr143128 17 25089451 to 25089462 11 + TSS region transcription start site region 143128
Telo2 17 25099570 to 25115967 16397 - protein coding gene telomere maintenance 2
Cpgi8753 17 25115283 to 25116319 1036 CpG island CpG island 8753
Tssr146811 17 25115733 to 25115783 50 - TSS region transcription start site region 146811
Tssr146812 17 25115916 to 25115935 19 - TSS region transcription start site region 146812
Ptx4 17 25120760 to 25125292 4532 + protein coding gene pentraxin 4
Tssr143129 17 25120787 to 25120803 16 + TSS region transcription start site region 143129
Tssr146813 17 25129337 to 25129349 12 - TSS region transcription start site region 146813
Tssr143130 17 25129572 to 25129601 29 + TSS region transcription start site region 143130
Cpgi8754 17 25133227 to 25133834 607 CpG island CpG island 8754
Tssr143131 17 25133385 to 25133434 49 + TSS region transcription start site region 143131
Clcn7 17 25133391 to 25162104 28713 + protein coding gene chloride channel, voltage-sensitive 7
Tssr143132 17 25133441 to 25133460 19 + TSS region transcription start site region 143132
Tssr143133 17 25135946 to 25135951 5 + TSS region transcription start site region 143133
Tssr143134 17 25136420 to 25136465 45 + TSS region transcription start site region 143134
Tssr146814 17 25136468 to 25136479 11 - TSS region transcription start site region 146814
Tssr146815 17 25136492 to 25136507 15 - TSS region transcription start site region 146815
Tssr143135 17 25136608 to 25136617 9 + TSS region transcription start site region 143135
Tssr143136 17 25136660 to 25136664 4 + TSS region transcription start site region 143136
Tssr143137 17 25136706 to 25136719 13 + TSS region transcription start site region 143137
Tssr143138 17 25139928 to 25139938 10 + TSS region transcription start site region 143138
Tssr146816 17 25140286 to 25140298 12 - TSS region transcription start site region 146816
Tssr146817 17 25140322 to 25140330 8 - TSS region transcription start site region 146817
Tssr143139 17 25145566 to 25145615 49 + TSS region transcription start site region 143139
Tssr143140 17 25159654 to 25159699 45 + TSS region transcription start site region 143140
Tssr143141 17 25162441 to 25162456 15 + TSS region transcription start site region 143141
Ccdc154 17 25162461 to 25171913 9452 + protein coding gene coiled-coil domain containing 154
Gm38655 17 25172897 to 25175471 2574 - protein coding gene predicted gene, 38655
4930568E02Rik 17 25183813 to 25184459 646 unclassified gene RIKEN cDNA 4930568E02 gene
Cpgi8755 17 25184003 to 25185296 1293 CpG island CpG island 8755
Tssr146818 17 25184382 to 25184402 20 - TSS region transcription start site region 146818
Tssr146819 17 25184404 to 25184468 64 - TSS region transcription start site region 146819
Tssr5037 17 25184558 to 25184563 5 + TSS region transcription start site region 5037
BC003965 17 25184561 to 25187662 3101 + protein coding gene cDNA sequence BC003965
Tssr143142 17 25184564 to 25184602 38 + TSS region transcription start site region 143142
Tssr143143 17 25184610 to 25184618 8 + TSS region transcription start site region 143143
Cpgi8756 17 25187863 to 25189667 1804 CpG island CpG island 8756
Tssr143144 17 25188380 to 25188418 38 + TSS region transcription start site region 143144
Unkl 17 25188397 to 25234443 46046 + protein coding gene unkempt family like zinc finger
D17Jcs43 17 25189209 to 25189395 186 DNA segment DNA segment, Chr 17, John C. Schimenti 43
Tssr146820 17 25211898 to 25211910 12 - TSS region transcription start site region 146820
Tssr143145 17 25212845 to 25212849 4 + TSS region transcription start site region 143145
Cpgi8757 17 25221986 to 25222165 179 CpG island CpG island 8757
Cpgi8758 17 25222710 to 25222897 187 CpG island CpG island 8758
Tssr146821 17 25224693 to 25224701 8 - TSS region transcription start site region 146821
Tssr143146 17 25228176 to 25228186 10 + TSS region transcription start site region 143146
Gnptg 17 25234317 to 25240170 5853 - protein coding gene N-acetylglucosamine-1-phosphotransferase, gamma subunit
Cpgi8759 17 25239688 to 25240744 1056 CpG island CpG island 8759
Tssr146822 17 25240112 to 25240158 46 - TSS region transcription start site region 146822
Tssr143147 17 25240166 to 25240220 54 + TSS region transcription start site region 143147
Tsr3 17 25240170 to 25242798 2628 + protein coding gene TSR3 20S rRNA accumulation
Tssr143148 17 25240225 to 25240245 20 + TSS region transcription start site region 143148
Baiap3 17 25242659 to 25256364 13705 - protein coding gene BAI1-associated protein 3
Mir3547 17 25245551 to 25245638 87 - miRNA gene microRNA 3547
Tssr146823 17 25248132 to 25248150 18 - TSS region transcription start site region 146823
Cpgi8760 17 25248328 to 25248563 235 CpG island CpG island 8760
Cpgi8761 17 25255514 to 25256752 1238 CpG island CpG island 8761
Tssr146824 17 25256274 to 25256293 19 - TSS region transcription start site region 146824
Ube2i 17 25261916 to 25274622 12706 - protein coding gene ubiquitin-conjugating enzyme E2I
Cpgi8762 17 25272888 to 25274405 1517 CpG island CpG island 8762
Tssr146825 17 25273254 to 25273265 11 - TSS region transcription start site region 146825
Tssr146826 17 25273289 to 25273301 12 - TSS region transcription start site region 146826
Tssr146827 17 25273366 to 25273383 17 - TSS region transcription start site region 146827
Tssr146828 17 25273390 to 25273443 53 - TSS region transcription start site region 146828
Tssr146829 17 25273506 to 25273526 20 - TSS region transcription start site region 146829
Tssr146830 17 25273541 to 25273557 16 - TSS region transcription start site region 146830
Tssr146831 17 25273562 to 25273638 76 - TSS region transcription start site region 146831
Tssr146832 17 25273799 to 25273855 56 - TSS region transcription start site region 146832
Tssr146833 17 25273861 to 25273886 25 - TSS region transcription start site region 146833
Gm17801 17 25274124 to 25275528 1404 + lncRNA gene predicted gene, 17801
Tssr146834 17 25274275 to 25274296 21 - TSS region transcription start site region 146834
Tssr146835 17 25274299 to 25274317 18 - TSS region transcription start site region 146835
Tssr143149 17 25274363 to 25274396 33 + TSS region transcription start site region 143149
Tssr143150 17 25298389 to 25298403 14 + TSS region transcription start site region 143150
Prss34 17 25298394 to 25300165 1771 + protein coding gene protease, serine 34
Gm25921 17 25306112 to 25306248 136 + snoRNA gene predicted gene, 25921
Tssr143151 17 25308642 to 25308647 5 + TSS region transcription start site region 143151
Prss28 17 25308646 to 25311876 3230 + protein coding gene protease, serine 28
Tssr5038 17 25317560 to 25317586 26 + TSS region transcription start site region 5038
Tssr143152 17 25318649 to 25318657 8 + TSS region transcription start site region 143152
Prss29 17 25318654 to 25322684 4030 + protein coding gene protease, serine 29
D17Mit26 17 25319036 to 25319178 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 26
D17Aus126 17 25319044 to 25319138 94 DNA segment DNA segment, Chr 17, Austin 126
Gm5430 17 25326612 to 25327526 914 - pseudogene predicted gene 5430
Gm50085 17 25330692 to 25332675 1983 + pseudogene predicted gene, 50085
D17Jcs44 17 25341521 to 25341757 236 DNA segment DNA segment, Chr 17, John C. Schimenti 44
Tpsab1 17 25343245 to 25345562 2317 - protein coding gene tryptase alpha/beta 1
Tssr146836 17 25345559 to 25345563 4 - TSS region transcription start site region 146836
Bbaa28 17 25365940 to 43665344 18299404 QTL B.burgdorferi-associated arthritis 28
Cd8mts5 17 25365940 to 25366175 235 QTL CD8 memory T cell subset 5
D17Mit46 17 25365940 to 25366175 235 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 46
Skull24 17 25365940 to 25366175 235 QTL skull morphology 24
Tssr143153 17 25366280 to 25366312 32 + TSS region transcription start site region 143153
Tpsb2 17 25366303 to 25368096 1793 + protein coding gene tryptase beta 2
Tssr143154 17 25366315 to 25366328 13 + TSS region transcription start site region 143154
Tssr143155 17 25369267 to 25369280 13 + TSS region transcription start site region 143155
Tpsg1 17 25369273 to 25374442 5169 + protein coding gene tryptase gamma 1
Tssr143156 17 25369328 to 25369337 9 + TSS region transcription start site region 143156
Tssr143157 17 25370550 to 25370566 16 + TSS region transcription start site region 143157
Tssr143158 17 25370575 to 25370599 24 + TSS region transcription start site region 143158
Tssr5039 17 25370614 to 25370633 19 + TSS region transcription start site region 5039
Cacna1h 17 25374285 to 25433783 59498 - protein coding gene calcium channel, voltage-dependent, T type, alpha 1H subunit
Gm33617 17 25388364 to 25390079 1715 + lncRNA gene predicted gene, 33617
Tssr146837 17 25392491 to 25392493 2 - TSS region transcription start site region 146837
Tssr146838 17 25408204 to 25408208 4 - TSS region transcription start site region 146838
Cpgi8763 17 25432461 to 25434638 2177 CpG island CpG island 8763
Tssr146839 17 25433263 to 25433307 44 - TSS region transcription start site region 146839
Tssr146840 17 25433554 to 25433574 20 - TSS region transcription start site region 146840
Tssr146841 17 25433611 to 25433621 10 - TSS region transcription start site region 146841
Tssr146842 17 25433742 to 25433767 25 - TSS region transcription start site region 146842
Tssr146843 17 25433775 to 25433790 15 - TSS region transcription start site region 146843
Gm33565 17 25433861 to 25436339 2478 + lncRNA gene predicted gene, 33565
Tssr143159 17 25453719 to 25453742 23 + TSS region transcription start site region 143159
Tssr143160 17 25454527 to 25454553 26 + TSS region transcription start site region 143160
Tekt4 17 25454675 to 25476602 21927 + protein coding gene tektin 4
Tssr143161 17 25471564 to 25471637 73 + TSS region transcription start site region 143161
Tssr143162 17 25471673 to 25471688 15 + TSS region transcription start site region 143162
Tssr143163 17 25471703 to 25471717 14 + TSS region transcription start site region 143163
Cpgi8764 17 25471759 to 25472289 530 CpG island CpG island 8764
Cpgi8765 17 25474437 to 25475078 641 CpG island CpG island 8765
Sstr5 17 25489875 to 25497288 7413 - protein coding gene somatostatin receptor 5
Cpgi8766 17 25496530 to 25497305 775 CpG island CpG island 8766
D17Jcs45 17 25498932 to 25499179 247 DNA segment DNA segment, Chr 17, John C. Schimenti 45
Cpgi8767 17 25518204 to 25518562 358 CpG island CpG island 8767
Tssr143164 17 25518468 to 25518484 16 + TSS region transcription start site region 143164
Gm33727 17 25518585 to 25522565 3980 + lncRNA gene predicted gene, 33727
Gm50025 17 25531437 to 25533045 1608 - lincRNA gene predicted gene, 50025
Gm33801 17 25537017 to 25538938 1921 - lncRNA gene predicted gene, 33801
Cpgi8768 17 25539717 to 25539908 191 CpG island CpG island 8768
Rpsa-ps6 17 25548903 to 25549489 586 - pseudogene ribosomal protein SA, pseudogene 6
Gm50026 17 25552048 to 25561213 9165 - lincRNA gene predicted gene, 50026
Cpgi8769 17 25556293 to 25556901 608 CpG island CpG island 8769
Sox8 17 25565893 to 25570686 4793 - protein coding gene SRY (sex determining region Y)-box 8
Tssr146844 17 25566017 to 25566022 5 - TSS region transcription start site region 146844
Cpgi8770 17 25567410 to 25568030 620 CpG island CpG island 8770
Cpgi8771 17 25569793 to 25571612 1819 CpG island CpG island 8771
Tssr146845 17 25570678 to 25570694 16 - TSS region transcription start site region 146845
2810468N07Rik 17 25570811 to 25575043 4232 + lncRNA gene RIKEN cDNA 2810468N07 gene
Tssr143165 17 25570822 to 25570848 26 + TSS region transcription start site region 143165
Tssr143166 17 25570874 to 25570931 57 + TSS region transcription start site region 143166
Tssr143167 17 25574420 to 25574425 5 + TSS region transcription start site region 143167
Cpgi8772 17 25578871 to 25579572 701 CpG island CpG island 8772
Tssr143168 17 25579161 to 25579209 48 + TSS region transcription start site region 143168
Lmf1 17 25579174 to 25662831 83657 + protein coding gene lipase maturation factor 1
D17Jcs46 17 25586399 to 25586706 307 DNA segment DNA segment, Chr 17, John C. Schimenti 46
2610529L02Rik 17 25649776 to 25650725 949 unclassified gene RIKEN cDNA 2610529L02 gene
4930541O19Rik 17 25665376 to 25698911 33535 unclassified gene RIKEN cDNA 4930541O19 gene
D17Jcs47 17 25690475 to 25690702 227 DNA segment DNA segment, Chr 17, John C. Schimenti 47
Gm22645 17 25694114 to 25694220 106 - snRNA gene predicted gene, 22645
Gm5836 17 25705049 to 25705819 770 + pseudogene predicted gene 5836
Cpgi8773 17 25716740 to 25718130 1390 CpG island CpG island 8773
Gng13 17 25717172 to 25719102 1930 + protein coding gene guanine nucleotide binding protein (G protein), gamma 13
Tssr143169 17 25717188 to 25717213 25 + TSS region transcription start site region 143169
Tssr143170 17 25717214 to 25717236 22 + TSS region transcription start site region 143170
Tssr143171 17 25717489 to 25717551 62 + TSS region transcription start site region 143171
Tssr143172 17 25718225 to 25718231 6 + TSS region transcription start site region 143172
Chtf18 17 25719030 to 25727438 8408 - protein coding gene CTF18, chromosome transmission fidelity factor 18
Cpgi8774 17 25726877 to 25727835 958 CpG island CpG island 8774
Tssr146846 17 25727344 to 25727363 19 - TSS region transcription start site region 146846
Tssr146847 17 25727364 to 25727426 62 - TSS region transcription start site region 146847
Tssr143173 17 25727726 to 25727797 71 + TSS region transcription start site region 143173
Rpusd1 17 25727751 to 25731456 3705 + protein coding gene RNA pseudouridylate synthase domain containing 1
Opfaq5 17 25731951 to 28773124 3041173 QTL open field activity QTL 5
Mslnl 17 25736040 to 25748330 12290 + protein coding gene mesothelin-like
Tssr5040 17 25736214 to 25736240 26 + TSS region transcription start site region 5040
Gm25083 17 25746788 to 25746879 91 - miRNA gene predicted gene, 25083
Tssr143174 17 25748613 to 25748622 9 + TSS region transcription start site region 143174
Msln 17 25748614 to 25754327 5713 - protein coding gene mesothelin
Tssr146848 17 25751113 to 25751132 19 - TSS region transcription start site region 146848
Tssr146849 17 25751522 to 25751568 46 - TSS region transcription start site region 146849
Tssr146850 17 25752352 to 25752385 33 - TSS region transcription start site region 146850
Tssr146851 17 25754048 to 25754069 21 - TSS region transcription start site region 146851
Tssr146852 17 25754225 to 25754240 15 - TSS region transcription start site region 146852
Tssr146853 17 25754327 to 25754338 11 - TSS region transcription start site region 146853
Tssr146854 17 25754343 to 25754382 39 - TSS region transcription start site region 146854
Tssr146855 17 25754516 to 25754521 5 - TSS region transcription start site region 146855
Tssr143175 17 25756653 to 25756665 12 + TSS region transcription start site region 143175
1700080C20Rik 17 25760201 to 25760521 320 unclassified gene RIKEN cDNA 1700080C20 gene
Gm41550 17 25767378 to 25772544 5166 + lncRNA gene predicted gene, 41550
Cpgi8775 17 25773453 to 25774090 637 CpG island CpG island 8775
Tssr143176 17 25773769 to 25773778 9 + TSS region transcription start site region 143176
Ciao3 17 25773776 to 25783332 9556 + protein coding gene cytosolic iron-sulfur assembly component 3
Tssr143177 17 25773787 to 25773824 37 + TSS region transcription start site region 143177
Haghl 17 25779843 to 25785670 5827 - protein coding gene hydroxyacylglutathione hydrolase-like
Mir6966 17 25780808 to 25780879 71 + miRNA gene microRNA 6966
Tssr146856 17 25785324 to 25785343 19 - TSS region transcription start site region 146856
Cpgi8776 17 25785336 to 25785721 385 CpG island CpG island 8776
Tssr146857 17 25785533 to 25785591 58 - TSS region transcription start site region 146857
Tssr143178 17 25786566 to 25786584 18 + TSS region transcription start site region 143178
Ccdc78 17 25786580 to 25790513 3933 + protein coding gene coiled-coil domain containing 78
Tssr143179 17 25786585 to 25786613 28 + TSS region transcription start site region 143179
Fam173a 17 25790508 to 25792284 1776 - protein coding gene family with sequence similarity 173, member A
Cpgi8777 17 25791548 to 25792697 1149 CpG island CpG island 8777
Tssr146858 17 25792347 to 25792380 33 - TSS region transcription start site region 146858