Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:24895787-25345803

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8748 17 24894529 to 24897291 2762 CpG island CpG island 8748
Mrps34 17 24895120 to 24896274 1154 + protein coding gene mitochondrial ribosomal protein S34
Tssr143115 17 24896488 to 24896530 42 + TSS region transcription start site region 143115
Nme3 17 24896500 to 24897522 1022 + protein coding gene NME/NM23 nucleoside diphosphate kinase 3
Tssr143116 17 24896535 to 24896549 14 + TSS region transcription start site region 143116
Tssr143117 17 24896609 to 24896628 19 + TSS region transcription start site region 143117
Mapk8ip3 17 24897506 to 24936977 39471 - protein coding gene mitogen-activated protein kinase 8 interacting protein 3
Del(17D17Jcs40-D17Mit198)7Jcs 17 24928286 to 27659245 2730959 chromosomal deletion deletion, Chr 17, John C Schimenti 7
D17Jcs40 17 24928286 to 24928484 198 DNA segment DNA segment, Chr 17, John C. Schimenti 40
Tssr143118 17 24932846 to 24932847 1 + TSS region transcription start site region 143118
Cpgi8749 17 24936290 to 24937274 984 CpG island CpG island 8749
Tssr146796 17 24936930 to 24936967 37 - TSS region transcription start site region 146796
Tssr146797 17 24936969 to 24937002 33 - TSS region transcription start site region 146797
Jpt2 17 24942470 to 24960623 18153 - protein coding gene Jupiter microtubule associated homolog 2
Tssr146798 17 24943189 to 24943231 42 - TSS region transcription start site region 146798
Tssr146799 17 24943234 to 24943247 13 - TSS region transcription start site region 146799
Cpgi8750 17 24960146 to 24961207 1061 CpG island CpG island 8750
Tssr146800 17 24960598 to 24960614 16 - TSS region transcription start site region 146800
Tssr146801 17 24960620 to 24960654 34 - TSS region transcription start site region 146801
Tssr146802 17 24960661 to 24960693 32 - TSS region transcription start site region 146802
Cramp1l 17 24961226 to 25015788 54562 - protein coding gene cramped chromatin regulator homolog 1
Tssr146803 17 24997851 to 24997881 30 - TSS region transcription start site region 146803
Cpgi8751 17 25013579 to 25014621 1042 CpG island CpG island 8751
Tssr146804 17 25014306 to 25014334 28 - TSS region transcription start site region 146804
Cpgi8752 17 25015107 to 25017023 1916 CpG island CpG island 8752
Tssr146805 17 25015689 to 25015703 14 - TSS region transcription start site region 146805
Tssr146806 17 25015708 to 25015718 10 - TSS region transcription start site region 146806
Tssr146807 17 25015741 to 25015753 12 - TSS region transcription start site region 146807
Tssr146808 17 25015766 to 25015791 25 - TSS region transcription start site region 146808
Tssr146809 17 25015798 to 25015821 23 - TSS region transcription start site region 146809
Tssr143119 17 25016068 to 25016124 56 + TSS region transcription start site region 143119
Ift140 17 25016085 to 25099495 83410 + protein coding gene intraflagellar transport 140
Tssr143120 17 25016343 to 25016423 80 + TSS region transcription start site region 143120
Tssr143121 17 25016506 to 25016579 73 + TSS region transcription start site region 143121
Tssr143122 17 25016581 to 25016588 7 + TSS region transcription start site region 143122
Del(17D17Jcs41-D17Jcs15)8Jcs 17 25022791 to 27025780 2002989 chromosomal deletion deletion, Chr 17, John C Schimenti 8
D17Jcs41 17 25022791 to 25022989 198 DNA segment DNA segment, Chr 17, John C. Schimenti 41
Tssr143123 17 25045361 to 25045370 9 + TSS region transcription start site region 143123
Tssr143124 17 25045383 to 25045396 13 + TSS region transcription start site region 143124
Tmem204 17 25057702 to 25083553 25851 - protein coding gene transmembrane protein 204
Tssr146810 17 25081138 to 25081201 63 - TSS region transcription start site region 146810
D17Jcs42 17 25083301 to 25083485 184 DNA segment DNA segment, Chr 17, John C. Schimenti 42
Tssr143125 17 25086943 to 25086985 42 + TSS region transcription start site region 143125
Tssr143126 17 25089375 to 25089384 9 + TSS region transcription start site region 143126
Tssr143127 17 25089389 to 25089441 52 + TSS region transcription start site region 143127
Tssr143128 17 25089451 to 25089462 11 + TSS region transcription start site region 143128
Telo2 17 25099570 to 25115967 16397 - protein coding gene telomere maintenance 2
Cpgi8753 17 25115283 to 25116319 1036 CpG island CpG island 8753
Tssr146811 17 25115733 to 25115783 50 - TSS region transcription start site region 146811
Tssr146812 17 25115916 to 25115935 19 - TSS region transcription start site region 146812
Ptx4 17 25120760 to 25125292 4532 + protein coding gene pentraxin 4
Tssr143129 17 25120787 to 25120803 16 + TSS region transcription start site region 143129
Tssr146813 17 25129337 to 25129349 12 - TSS region transcription start site region 146813
Tssr143130 17 25129572 to 25129601 29 + TSS region transcription start site region 143130
Cpgi8754 17 25133227 to 25133834 607 CpG island CpG island 8754
Tssr143131 17 25133385 to 25133434 49 + TSS region transcription start site region 143131
Clcn7 17 25133391 to 25162104 28713 + protein coding gene chloride channel, voltage-sensitive 7
Tssr143132 17 25133441 to 25133460 19 + TSS region transcription start site region 143132
Tssr143133 17 25135946 to 25135951 5 + TSS region transcription start site region 143133
Tssr143134 17 25136420 to 25136465 45 + TSS region transcription start site region 143134
Tssr146814 17 25136468 to 25136479 11 - TSS region transcription start site region 146814
Tssr146815 17 25136492 to 25136507 15 - TSS region transcription start site region 146815
Tssr143135 17 25136608 to 25136617 9 + TSS region transcription start site region 143135
Tssr143136 17 25136660 to 25136664 4 + TSS region transcription start site region 143136
Tssr143137 17 25136706 to 25136719 13 + TSS region transcription start site region 143137
Tssr143138 17 25139928 to 25139938 10 + TSS region transcription start site region 143138
Tssr146816 17 25140286 to 25140298 12 - TSS region transcription start site region 146816
Tssr146817 17 25140322 to 25140330 8 - TSS region transcription start site region 146817
Tssr143139 17 25145566 to 25145615 49 + TSS region transcription start site region 143139
Tssr143140 17 25159654 to 25159699 45 + TSS region transcription start site region 143140
Tssr143141 17 25162441 to 25162456 15 + TSS region transcription start site region 143141
Ccdc154 17 25162461 to 25171913 9452 + protein coding gene coiled-coil domain containing 154
Gm38655 17 25172897 to 25175471 2574 - protein coding gene predicted gene, 38655
4930568E02Rik 17 25183813 to 25184459 646 unclassified gene RIKEN cDNA 4930568E02 gene
Cpgi8755 17 25184003 to 25185296 1293 CpG island CpG island 8755
Tssr146818 17 25184382 to 25184402 20 - TSS region transcription start site region 146818
Tssr146819 17 25184404 to 25184468 64 - TSS region transcription start site region 146819
Tssr5037 17 25184558 to 25184563 5 + TSS region transcription start site region 5037
BC003965 17 25184561 to 25187662 3101 + protein coding gene cDNA sequence BC003965
Tssr143142 17 25184564 to 25184602 38 + TSS region transcription start site region 143142
Tssr143143 17 25184610 to 25184618 8 + TSS region transcription start site region 143143
Cpgi8756 17 25187863 to 25189667 1804 CpG island CpG island 8756
Tssr143144 17 25188380 to 25188418 38 + TSS region transcription start site region 143144
Unkl 17 25188397 to 25234443 46046 + protein coding gene unkempt family like zinc finger
D17Jcs43 17 25189209 to 25189395 186 DNA segment DNA segment, Chr 17, John C. Schimenti 43
Tssr146820 17 25211898 to 25211910 12 - TSS region transcription start site region 146820
Tssr143145 17 25212845 to 25212849 4 + TSS region transcription start site region 143145
Cpgi8757 17 25221986 to 25222165 179 CpG island CpG island 8757
Cpgi8758 17 25222710 to 25222897 187 CpG island CpG island 8758
Tssr146821 17 25224693 to 25224701 8 - TSS region transcription start site region 146821
Tssr143146 17 25228176 to 25228186 10 + TSS region transcription start site region 143146
Gnptg 17 25234317 to 25240170 5853 - protein coding gene N-acetylglucosamine-1-phosphotransferase, gamma subunit
Cpgi8759 17 25239688 to 25240744 1056 CpG island CpG island 8759
Tssr146822 17 25240112 to 25240158 46 - TSS region transcription start site region 146822
Tssr143147 17 25240166 to 25240220 54 + TSS region transcription start site region 143147
Tsr3 17 25240170 to 25242798 2628 + protein coding gene TSR3 20S rRNA accumulation
Tssr143148 17 25240225 to 25240245 20 + TSS region transcription start site region 143148
Baiap3 17 25242659 to 25256364 13705 - protein coding gene BAI1-associated protein 3
Mir3547 17 25245551 to 25245638 87 - miRNA gene microRNA 3547
Tssr146823 17 25248132 to 25248150 18 - TSS region transcription start site region 146823
Cpgi8760 17 25248328 to 25248563 235 CpG island CpG island 8760
Cpgi8761 17 25255514 to 25256752 1238 CpG island CpG island 8761
Tssr146824 17 25256274 to 25256293 19 - TSS region transcription start site region 146824
Ube2i 17 25261916 to 25274622 12706 - protein coding gene ubiquitin-conjugating enzyme E2I
Cpgi8762 17 25272888 to 25274405 1517 CpG island CpG island 8762
Tssr146825 17 25273254 to 25273265 11 - TSS region transcription start site region 146825
Tssr146826 17 25273289 to 25273301 12 - TSS region transcription start site region 146826
Tssr146827 17 25273366 to 25273383 17 - TSS region transcription start site region 146827
Tssr146828 17 25273390 to 25273443 53 - TSS region transcription start site region 146828
Tssr146829 17 25273506 to 25273526 20 - TSS region transcription start site region 146829
Tssr146830 17 25273541 to 25273557 16 - TSS region transcription start site region 146830
Tssr146831 17 25273562 to 25273638 76 - TSS region transcription start site region 146831
Tssr146832 17 25273799 to 25273855 56 - TSS region transcription start site region 146832
Tssr146833 17 25273861 to 25273886 25 - TSS region transcription start site region 146833
Gm17801 17 25274124 to 25275528 1404 + lncRNA gene predicted gene, 17801
Tssr146834 17 25274275 to 25274296 21 - TSS region transcription start site region 146834
Tssr146835 17 25274299 to 25274317 18 - TSS region transcription start site region 146835
Tssr143149 17 25274363 to 25274396 33 + TSS region transcription start site region 143149
Tssr143150 17 25298389 to 25298403 14 + TSS region transcription start site region 143150
Prss34 17 25298394 to 25300165 1771 + protein coding gene protease, serine 34
Gm25921 17 25306112 to 25306248 136 + snoRNA gene predicted gene, 25921
Tssr143151 17 25308642 to 25308647 5 + TSS region transcription start site region 143151
Prss28 17 25308646 to 25311876 3230 + protein coding gene protease, serine 28
Tssr5038 17 25317560 to 25317586 26 + TSS region transcription start site region 5038
Tssr143152 17 25318649 to 25318657 8 + TSS region transcription start site region 143152
Prss29 17 25318654 to 25322684 4030 + protein coding gene protease, serine 29
D17Mit26 17 25319036 to 25319178 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 26
D17Aus126 17 25319044 to 25319138 94 DNA segment DNA segment, Chr 17, Austin 126
Gm5430 17 25326612 to 25327526 914 - pseudogene predicted gene 5430
Gm50085 17 25330692 to 25332675 1983 + pseudogene predicted gene, 50085
D17Jcs44 17 25341521 to 25341757 236 DNA segment DNA segment, Chr 17, John C. Schimenti 44
Tpsab1 17 25343245 to 25345562 2317 - protein coding gene tryptase alpha/beta 1
Tssr146836 17 25345559 to 25345563 4 - TSS region transcription start site region 146836