Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:24890766-25140791

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spsb3 17 24886643 to 24892152 5509 + protein coding gene splA/ryanodine receptor domain and SOCS box containing 3
Tssr143112 17 24891357 to 24891362 5 + TSS region transcription start site region 143112
Eme2 17 24892152 to 24895087 2935 - protein coding gene essential meiotic structure-specific endonuclease subunit 2
Cpgi8748 17 24894529 to 24897291 2762 CpG island CpG island 8748
Tssr146794 17 24895047 to 24895077 30 - TSS region transcription start site region 146794
Tssr143113 17 24895117 to 24895167 50 + TSS region transcription start site region 143113
Mrps34 17 24895120 to 24896274 1154 + protein coding gene mitochondrial ribosomal protein S34
Tssr146795 17 24895460 to 24895485 25 - TSS region transcription start site region 146795
Tssr143114 17 24895519 to 24895542 23 + TSS region transcription start site region 143114
Tssr143115 17 24896488 to 24896530 42 + TSS region transcription start site region 143115
Nme3 17 24896500 to 24897522 1022 + protein coding gene NME/NM23 nucleoside diphosphate kinase 3
Tssr143116 17 24896535 to 24896549 14 + TSS region transcription start site region 143116
Tssr143117 17 24896609 to 24896628 19 + TSS region transcription start site region 143117
Mapk8ip3 17 24897506 to 24936977 39471 - protein coding gene mitogen-activated protein kinase 8 interacting protein 3
D17Jcs40 17 24928286 to 24928484 198 DNA segment DNA segment, Chr 17, John C. Schimenti 40
Del(17D17Jcs40-D17Mit198)7Jcs 17 24928286 to 27659245 2730959 chromosomal deletion deletion, Chr 17, John C Schimenti 7
Tssr143118 17 24932846 to 24932847 1 + TSS region transcription start site region 143118
Cpgi8749 17 24936290 to 24937274 984 CpG island CpG island 8749
Tssr146796 17 24936930 to 24936967 37 - TSS region transcription start site region 146796
Tssr146797 17 24936969 to 24937002 33 - TSS region transcription start site region 146797
Jpt2 17 24942470 to 24960623 18153 - protein coding gene Jupiter microtubule associated homolog 2
Tssr146798 17 24943189 to 24943231 42 - TSS region transcription start site region 146798
Tssr146799 17 24943234 to 24943247 13 - TSS region transcription start site region 146799
Cpgi8750 17 24960146 to 24961207 1061 CpG island CpG island 8750
Tssr146800 17 24960598 to 24960614 16 - TSS region transcription start site region 146800
Tssr146801 17 24960620 to 24960654 34 - TSS region transcription start site region 146801
Tssr146802 17 24960661 to 24960693 32 - TSS region transcription start site region 146802
Cramp1l 17 24961226 to 25015788 54562 - protein coding gene cramped chromatin regulator homolog 1
Tssr146803 17 24997851 to 24997881 30 - TSS region transcription start site region 146803
Cpgi8751 17 25013579 to 25014621 1042 CpG island CpG island 8751
Tssr146804 17 25014306 to 25014334 28 - TSS region transcription start site region 146804
Cpgi8752 17 25015107 to 25017023 1916 CpG island CpG island 8752
Tssr146805 17 25015689 to 25015703 14 - TSS region transcription start site region 146805
Tssr146806 17 25015708 to 25015718 10 - TSS region transcription start site region 146806
Tssr146807 17 25015741 to 25015753 12 - TSS region transcription start site region 146807
Tssr146808 17 25015766 to 25015791 25 - TSS region transcription start site region 146808
Tssr146809 17 25015798 to 25015821 23 - TSS region transcription start site region 146809
Tssr143119 17 25016068 to 25016124 56 + TSS region transcription start site region 143119
Ift140 17 25016085 to 25099495 83410 + protein coding gene intraflagellar transport 140
Tssr143120 17 25016343 to 25016423 80 + TSS region transcription start site region 143120
Tssr143121 17 25016506 to 25016579 73 + TSS region transcription start site region 143121
Tssr143122 17 25016581 to 25016588 7 + TSS region transcription start site region 143122
D17Jcs41 17 25022791 to 25022989 198 DNA segment DNA segment, Chr 17, John C. Schimenti 41
Del(17D17Jcs41-D17Jcs15)8Jcs 17 25022791 to 27025780 2002989 chromosomal deletion deletion, Chr 17, John C Schimenti 8
Tssr143123 17 25045361 to 25045370 9 + TSS region transcription start site region 143123
Tssr143124 17 25045383 to 25045396 13 + TSS region transcription start site region 143124
Tmem204 17 25057702 to 25083553 25851 - protein coding gene transmembrane protein 204
Tssr146810 17 25081138 to 25081201 63 - TSS region transcription start site region 146810
D17Jcs42 17 25083301 to 25083485 184 DNA segment DNA segment, Chr 17, John C. Schimenti 42
Tssr143125 17 25086943 to 25086985 42 + TSS region transcription start site region 143125
Tssr143126 17 25089375 to 25089384 9 + TSS region transcription start site region 143126
Tssr143127 17 25089389 to 25089441 52 + TSS region transcription start site region 143127
Tssr143128 17 25089451 to 25089462 11 + TSS region transcription start site region 143128
Telo2 17 25099570 to 25115967 16397 - protein coding gene telomere maintenance 2
Cpgi8753 17 25115283 to 25116319 1036 CpG island CpG island 8753
Tssr146811 17 25115733 to 25115783 50 - TSS region transcription start site region 146811
Tssr146812 17 25115916 to 25115935 19 - TSS region transcription start site region 146812
Ptx4 17 25120760 to 25125292 4532 + protein coding gene pentraxin 4
Tssr143129 17 25120787 to 25120803 16 + TSS region transcription start site region 143129
Tssr146813 17 25129337 to 25129349 12 - TSS region transcription start site region 146813
Tssr143130 17 25129572 to 25129601 29 + TSS region transcription start site region 143130
Cpgi8754 17 25133227 to 25133834 607 CpG island CpG island 8754
Tssr143131 17 25133385 to 25133434 49 + TSS region transcription start site region 143131
Clcn7 17 25133391 to 25162104 28713 + protein coding gene chloride channel, voltage-sensitive 7
Tssr143132 17 25133441 to 25133460 19 + TSS region transcription start site region 143132
Tssr143133 17 25135946 to 25135951 5 + TSS region transcription start site region 143133
Tssr143134 17 25136420 to 25136465 45 + TSS region transcription start site region 143134
Tssr146814 17 25136468 to 25136479 11 - TSS region transcription start site region 146814
Tssr146815 17 25136492 to 25136507 15 - TSS region transcription start site region 146815
Tssr143135 17 25136608 to 25136617 9 + TSS region transcription start site region 143135
Tssr143136 17 25136660 to 25136664 4 + TSS region transcription start site region 143136
Tssr143137 17 25136706 to 25136719 13 + TSS region transcription start site region 143137
Tssr143138 17 25139928 to 25139938 10 + TSS region transcription start site region 143138
Tssr146816 17 25140286 to 25140298 12 - TSS region transcription start site region 146816
Tssr146817 17 25140322 to 25140330 8 - TSS region transcription start site region 146817