Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:24698234-25188247

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obrq13 17 11979442 to 24857795 12878353 QTL obesity resistance QTL 13
Noxo1 17 24696234 to 24700529 4295 + protein coding gene NADPH oxidase organizer 1
Tssr143062 17 24698220 to 24698252 32 + TSS region transcription start site region 143062
Tssr143063 17 24698294 to 24698345 51 + TSS region transcription start site region 143063
Tssr143064 17 24698349 to 24698371 22 + TSS region transcription start site region 143064
Tssr5035 17 24699799 to 24699807 8 + TSS region transcription start site region 5035
Tssr143065 17 24699903 to 24699905 2 + TSS region transcription start site region 143065
Tbl3 17 24700653 to 24707653 7000 - protein coding gene transducin (beta)-like 3
Cpgi8740 17 24707412 to 24707906 494 CpG island CpG island 8740
Tssr146772 17 24707607 to 24707610 3 - TSS region transcription start site region 146772
Tssr146773 17 24707617 to 24707661 44 - TSS region transcription start site region 146773
Rnf151 17 24715839 to 24718057 2218 - protein coding gene ring finger protein 151
Tssr146774 17 24718006 to 24718018 12 - TSS region transcription start site region 146774
Tssr146775 17 24718051 to 24718062 11 - TSS region transcription start site region 146775
Tssr143066 17 24718088 to 24718118 30 + TSS region transcription start site region 143066
Cpgi8741 17 24719520 to 24720535 1015 CpG island CpG island 8741
Snhg9 17 24719531 to 24719965 434 - antisense lncRNA gene small nucleolar RNA host gene 9
Snora78 17 24719676 to 24719803 127 - snoRNA gene small nucleolar RNA, H/ACA box 7
Tssr146776 17 24719889 to 24719916 27 - TSS region transcription start site region 146776
Tssr146777 17 24719918 to 24719929 11 - TSS region transcription start site region 146777
Tssr143067 17 24719953 to 24719956 3 + TSS region transcription start site region 143067
Tssr146778 17 24719959 to 24719970 11 - TSS region transcription start site region 146778
Tssr143068 17 24720043 to 24720057 14 + TSS region transcription start site region 143068
Rps2 17 24720063 to 24721927 1864 + protein coding gene ribosomal protein S2
Tssr143069 17 24720067 to 24720083 16 + TSS region transcription start site region 143069
Tssr143070 17 24720102 to 24720118 16 + TSS region transcription start site region 143070
Tssr143071 17 24720181 to 24720189 8 + TSS region transcription start site region 143071
Tssr143072 17 24720251 to 24720262 11 + TSS region transcription start site region 143072
Snora64 17 24720789 to 24720905 116 + snoRNA gene small nucleolar RNA, H/ACA box 64
Ndufb10 17 24722067 to 24724388 2321 - protein coding gene NADH:ubiquinone oxidoreductase subunit B10
Cpgi8742 17 24723854 to 24724717 863 CpG island CpG island 8742
Tssr146779 17 24724333 to 24724344 11 - TSS region transcription start site region 146779
Tssr146780 17 24724374 to 24724455 81 - TSS region transcription start site region 146780
Tssr143073 17 24727819 to 24727839 20 + TSS region transcription start site region 143073
Rpl3l 17 24727829 to 24736149 8320 + protein coding gene ribosomal protein L3-like
Tssr143074 17 24727848 to 24727863 15 + TSS region transcription start site region 143074
Tssr143075 17 24728244 to 24728247 3 + TSS region transcription start site region 143075
Tssr143076 17 24728249 to 24728259 10 + TSS region transcription start site region 143076
Tssr143077 17 24728363 to 24728381 18 + TSS region transcription start site region 143077
Tssr143078 17 24730888 to 24730903 15 + TSS region transcription start site region 143078
Tssr5036 17 24736371 to 24736377 6 - TSS region transcription start site region 5036
Cpgi8743 17 24736459 to 24736797 338 CpG island CpG island 8743
Tssr143079 17 24736639 to 24736658 19 + TSS region transcription start site region 143079
Msrb1 17 24736642 to 24742778 6136 + protein coding gene methionine sulfoxide reductase B1
Tssr143080 17 24736660 to 24736671 11 + TSS region transcription start site region 143080
Tssr143081 17 24736673 to 24736695 22 + TSS region transcription start site region 143081
Tssr146781 17 24737641 to 24737645 4 - TSS region transcription start site region 146781
Tssr143082 17 24740037 to 24740053 16 + TSS region transcription start site region 143082
Tssr143083 17 24740057 to 24740067 10 + TSS region transcription start site region 143083
Tssr143084 17 24742325 to 24742356 31 + TSS region transcription start site region 143084
Tssr143085 17 24742448 to 24742466 18 + TSS region transcription start site region 143085
Cpgi8744 17 24752322 to 24753648 1326 CpG island CpG island 8744
Tssr143086 17 24752941 to 24752954 13 + TSS region transcription start site region 143086
Tssr143087 17 24752980 to 24752994 14 + TSS region transcription start site region 143087
Hs3st6 17 24752988 to 24758684 5696 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 6
D17Jcs50 17 24767087 to 24767276 189 DNA segment DNA segment, Chr 17, John C. Schimenti 50
Gm50022 17 24779703 to 24781984 2281 + lincRNA gene predicted gene, 50022
Tssr143088 17 24779724 to 24779751 27 + TSS region transcription start site region 143088
Tssr143089 17 24779784 to 24779799 15 + TSS region transcription start site region 143089
Cpgi8745 17 24803911 to 24804938 1027 CpG island CpG island 8745
Tssr143090 17 24804291 to 24804309 18 + TSS region transcription start site region 143090
Meiob 17 24804301 to 24839790 35489 + protein coding gene meiosis specific with OB domains
Tssr143091 17 24804312 to 24804325 13 + TSS region transcription start site region 143091
Tssr143092 17 24840108 to 24840123 15 + TSS region transcription start site region 143092
Hagh 17 24840143 to 24864450 24307 + protein coding gene hydroxyacyl glutathione hydrolase
Remslp5 17 24840143 to 24864450 24307 QTL rapid eye movement sleep 5
Fahd1 17 24848896 to 24850302 1406 - protein coding gene fumarylacetoacetate hydrolase domain containing 1
Cpgi8746 17 24849680 to 24850977 1297 CpG island CpG island 8746
Tssr146782 17 24849960 to 24849979 19 - TSS region transcription start site region 146782
Tssr146783 17 24849993 to 24850018 25 - TSS region transcription start site region 146783
Tssr146784 17 24850082 to 24850118 36 - TSS region transcription start site region 146784
Tssr146785 17 24850290 to 24850319 29 - TSS region transcription start site region 146785
Tssr146786 17 24850320 to 24850344 24 - TSS region transcription start site region 146786
Tssr143093 17 24850484 to 24850495 11 + TSS region transcription start site region 143093
Tssr143094 17 24850515 to 24850591 76 + TSS region transcription start site region 143094
Tssr143095 17 24850654 to 24850683 29 + TSS region transcription start site region 143095
Tssr143096 17 24850691 to 24850700 9 + TSS region transcription start site region 143096
Tssr143097 17 24850705 to 24850706 1 + TSS region transcription start site region 143097
Tssr143098 17 24850719 to 24850726 7 + TSS region transcription start site region 143098
Tssr143099 17 24850742 to 24850752 10 + TSS region transcription start site region 143099
Sst5 17 24857609 to 55405969 30548360 QTL susceptibility to tuberculosis 5
D17Mit133 17 24857609 to 24857795 186 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 133
hlb156 17 24857609 to 31842786 6985177 heritable phenotypic marker heart, lung and blood, 156
Gm41549 17 24866531 to 24878070 11539 - lncRNA gene predicted gene, 41549
Tssr146787 17 24874435 to 24874449 14 - TSS region transcription start site region 146787
Tssr143100 17 24874902 to 24874908 6 + TSS region transcription start site region 143100
Igfals 17 24877652 to 24882011 4359 + protein coding gene insulin-like growth factor binding protein, acid labile subunit
Tssr143101 17 24877834 to 24877875 41 + TSS region transcription start site region 143101
Tssr143102 17 24878225 to 24878264 39 + TSS region transcription start site region 143102
Tssr143103 17 24878694 to 24878705 11 + TSS region transcription start site region 143103
Tssr143104 17 24878724 to 24878781 57 + TSS region transcription start site region 143104
Tssr143105 17 24878791 to 24878799 8 + TSS region transcription start site region 143105
Nubp2 17 24882611 to 24886349 3738 - protein coding gene nucleotide binding protein 2
Cpgi8747 17 24885805 to 24887296 1491 CpG island CpG island 8747
Tssr146788 17 24885859 to 24885870 11 - TSS region transcription start site region 146788
Tssr146789 17 24885872 to 24885893 21 - TSS region transcription start site region 146789
Tssr146790 17 24885900 to 24885909 9 - TSS region transcription start site region 146790
Tssr146791 17 24885936 to 24885945 9 - TSS region transcription start site region 146791
Tssr143106 17 24885962 to 24885971 9 + TSS region transcription start site region 143106
Tssr143107 17 24885975 to 24885991 16 + TSS region transcription start site region 143107
Tssr143108 17 24886002 to 24886017 15 + TSS region transcription start site region 143108
Tssr143109 17 24886020 to 24886035 15 + TSS region transcription start site region 143109
Tssr146792 17 24886304 to 24886353 49 - TSS region transcription start site region 146792
Tssr146793 17 24886383 to 24886394 11 - TSS region transcription start site region 146793
Spsb3 17 24886643 to 24892152 5509 + protein coding gene splA/ryanodine receptor domain and SOCS box containing 3
Tssr143110 17 24886689 to 24886765 76 + TSS region transcription start site region 143110
Tssr143111 17 24886878 to 24886898 20 + TSS region transcription start site region 143111
Tssr143112 17 24891357 to 24891362 5 + TSS region transcription start site region 143112
Eme2 17 24892152 to 24895087 2935 - protein coding gene essential meiotic structure-specific endonuclease subunit 2
Cpgi8748 17 24894529 to 24897291 2762 CpG island CpG island 8748
Tssr146794 17 24895047 to 24895077 30 - TSS region transcription start site region 146794
Tssr143113 17 24895117 to 24895167 50 + TSS region transcription start site region 143113
Mrps34 17 24895120 to 24896274 1154 + protein coding gene mitochondrial ribosomal protein S34
Tssr146795 17 24895460 to 24895485 25 - TSS region transcription start site region 146795
Tssr143114 17 24895519 to 24895542 23 + TSS region transcription start site region 143114
Tssr143115 17 24896488 to 24896530 42 + TSS region transcription start site region 143115
Nme3 17 24896500 to 24897522 1022 + protein coding gene NME/NM23 nucleoside diphosphate kinase 3
Tssr143116 17 24896535 to 24896549 14 + TSS region transcription start site region 143116
Tssr143117 17 24896609 to 24896628 19 + TSS region transcription start site region 143117
Mapk8ip3 17 24897506 to 24936977 39471 - protein coding gene mitogen-activated protein kinase 8 interacting protein 3
Del(17D17Jcs40-D17Mit198)7Jcs 17 24928286 to 27659245 2730959 chromosomal deletion deletion, Chr 17, John C Schimenti 7
D17Jcs40 17 24928286 to 24928484 198 DNA segment DNA segment, Chr 17, John C. Schimenti 40
Tssr143118 17 24932846 to 24932847 1 + TSS region transcription start site region 143118
Cpgi8749 17 24936290 to 24937274 984 CpG island CpG island 8749
Tssr146796 17 24936930 to 24936967 37 - TSS region transcription start site region 146796
Tssr146797 17 24936969 to 24937002 33 - TSS region transcription start site region 146797
Jpt2 17 24942470 to 24960623 18153 - protein coding gene Jupiter microtubule associated homolog 2
Tssr146798 17 24943189 to 24943231 42 - TSS region transcription start site region 146798
Tssr146799 17 24943234 to 24943247 13 - TSS region transcription start site region 146799
Cpgi8750 17 24960146 to 24961207 1061 CpG island CpG island 8750
Tssr146800 17 24960598 to 24960614 16 - TSS region transcription start site region 146800
Tssr146801 17 24960620 to 24960654 34 - TSS region transcription start site region 146801
Tssr146802 17 24960661 to 24960693 32 - TSS region transcription start site region 146802
Cramp1l 17 24961226 to 25015788 54562 - protein coding gene cramped chromatin regulator homolog 1
Tssr146803 17 24997851 to 24997881 30 - TSS region transcription start site region 146803
Cpgi8751 17 25013579 to 25014621 1042 CpG island CpG island 8751
Tssr146804 17 25014306 to 25014334 28 - TSS region transcription start site region 146804
Cpgi8752 17 25015107 to 25017023 1916 CpG island CpG island 8752
Tssr146805 17 25015689 to 25015703 14 - TSS region transcription start site region 146805
Tssr146806 17 25015708 to 25015718 10 - TSS region transcription start site region 146806
Tssr146807 17 25015741 to 25015753 12 - TSS region transcription start site region 146807
Tssr146808 17 25015766 to 25015791 25 - TSS region transcription start site region 146808
Tssr146809 17 25015798 to 25015821 23 - TSS region transcription start site region 146809
Tssr143119 17 25016068 to 25016124 56 + TSS region transcription start site region 143119
Ift140 17 25016085 to 25099495 83410 + protein coding gene intraflagellar transport 140
Tssr143120 17 25016343 to 25016423 80 + TSS region transcription start site region 143120
Tssr143121 17 25016506 to 25016579 73 + TSS region transcription start site region 143121
Tssr143122 17 25016581 to 25016588 7 + TSS region transcription start site region 143122
Del(17D17Jcs41-D17Jcs15)8Jcs 17 25022791 to 27025780 2002989 chromosomal deletion deletion, Chr 17, John C Schimenti 8
D17Jcs41 17 25022791 to 25022989 198 DNA segment DNA segment, Chr 17, John C. Schimenti 41
Tssr143123 17 25045361 to 25045370 9 + TSS region transcription start site region 143123
Tssr143124 17 25045383 to 25045396 13 + TSS region transcription start site region 143124
Tmem204 17 25057702 to 25083553 25851 - protein coding gene transmembrane protein 204
Tssr146810 17 25081138 to 25081201 63 - TSS region transcription start site region 146810
D17Jcs42 17 25083301 to 25083485 184 DNA segment DNA segment, Chr 17, John C. Schimenti 42
Tssr143125 17 25086943 to 25086985 42 + TSS region transcription start site region 143125
Tssr143126 17 25089375 to 25089384 9 + TSS region transcription start site region 143126
Tssr143127 17 25089389 to 25089441 52 + TSS region transcription start site region 143127
Tssr143128 17 25089451 to 25089462 11 + TSS region transcription start site region 143128
Telo2 17 25099570 to 25115967 16397 - protein coding gene telomere maintenance 2
Cpgi8753 17 25115283 to 25116319 1036 CpG island CpG island 8753
Tssr146811 17 25115733 to 25115783 50 - TSS region transcription start site region 146811
Tssr146812 17 25115916 to 25115935 19 - TSS region transcription start site region 146812
Ptx4 17 25120760 to 25125292 4532 + protein coding gene pentraxin 4
Tssr143129 17 25120787 to 25120803 16 + TSS region transcription start site region 143129
Tssr146813 17 25129337 to 25129349 12 - TSS region transcription start site region 146813
Tssr143130 17 25129572 to 25129601 29 + TSS region transcription start site region 143130
Cpgi8754 17 25133227 to 25133834 607 CpG island CpG island 8754
Tssr143131 17 25133385 to 25133434 49 + TSS region transcription start site region 143131
Clcn7 17 25133391 to 25162104 28713 + protein coding gene chloride channel, voltage-sensitive 7
Tssr143132 17 25133441 to 25133460 19 + TSS region transcription start site region 143132
Tssr143133 17 25135946 to 25135951 5 + TSS region transcription start site region 143133
Tssr143134 17 25136420 to 25136465 45 + TSS region transcription start site region 143134
Tssr146814 17 25136468 to 25136479 11 - TSS region transcription start site region 146814
Tssr146815 17 25136492 to 25136507 15 - TSS region transcription start site region 146815
Tssr143135 17 25136608 to 25136617 9 + TSS region transcription start site region 143135
Tssr143136 17 25136660 to 25136664 4 + TSS region transcription start site region 143136
Tssr143137 17 25136706 to 25136719 13 + TSS region transcription start site region 143137
Tssr143138 17 25139928 to 25139938 10 + TSS region transcription start site region 143138
Tssr146816 17 25140286 to 25140298 12 - TSS region transcription start site region 146816
Tssr146817 17 25140322 to 25140330 8 - TSS region transcription start site region 146817
Tssr143139 17 25145566 to 25145615 49 + TSS region transcription start site region 143139
Tssr143140 17 25159654 to 25159699 45 + TSS region transcription start site region 143140
Tssr143141 17 25162441 to 25162456 15 + TSS region transcription start site region 143141
Ccdc154 17 25162461 to 25171913 9452 + protein coding gene coiled-coil domain containing 154
Gm38655 17 25172897 to 25175471 2574 - protein coding gene predicted gene, 38655
4930568E02Rik 17 25183813 to 25184459 646 unclassified gene RIKEN cDNA 4930568E02 gene
Cpgi8755 17 25184003 to 25185296 1293 CpG island CpG island 8755
Tssr146818 17 25184382 to 25184402 20 - TSS region transcription start site region 146818
Tssr146819 17 25184404 to 25184468 64 - TSS region transcription start site region 146819
Tssr5037 17 25184558 to 25184563 5 + TSS region transcription start site region 5037
BC003965 17 25184561 to 25187662 3101 + protein coding gene cDNA sequence BC003965
Tssr143142 17 25184564 to 25184602 38 + TSS region transcription start site region 143142
Tssr143143 17 25184610 to 25184618 8 + TSS region transcription start site region 143143
Cpgi8756 17 25187863 to 25189667 1804 CpG island CpG island 8756