Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:24496821-24696981

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Caskin1 17 24488601 to 24508671 20070 + protein coding gene CASK interacting protein 1
Cpgi8723 17 24504900 to 24505551 651 CpG island CpG island 8723
Cpgi8724 17 24506412 to 24507356 944 CpG island CpG island 8724
Traf7 17 24508850 to 24527938 19088 - protein coding gene TNF receptor-associated factor 7
Tssr146739 17 24514977 to 24515013 36 - TSS region transcription start site region 146739
Cpgi8725 17 24527565 to 24528252 687 CpG island CpG island 8725
Tssr146740 17 24527814 to 24527829 15 - TSS region transcription start site region 146740
Tssr146741 17 24527830 to 24527884 54 - TSS region transcription start site region 146741
Tssr146742 17 24527896 to 24527907 11 - TSS region transcription start site region 146742
Tssr146743 17 24527925 to 24527935 10 - TSS region transcription start site region 146743
Tssr146744 17 24527937 to 24527951 14 - TSS region transcription start site region 146744
Tssr143043 17 24528243 to 24528264 21 + TSS region transcription start site region 143043
Rab26os 17 24528251 to 24528744 493 + antisense lncRNA gene RAB26, member RAS oncogene family, opposite strand
Snord60 17 24528476 to 24528553 77 + snoRNA gene small nucleolar RNA, C/D box 60
Rab26 17 24529054 to 24533747 4693 - protein coding gene RAB26, member RAS oncogene family
Tssr143044 17 24529107 to 24529108 1 + TSS region transcription start site region 143044
Cpgi8726 17 24533057 to 24533995 938 CpG island CpG island 8726
Tssr146745 17 24533709 to 24533732 23 - TSS region transcription start site region 146745
Gm33508 17 24533862 to 24546531 12669 + lncRNA gene predicted gene, 33508
Tssr143045 17 24533885 to 24533900 15 + TSS region transcription start site region 143045
Cpgi8727 17 24544753 to 24544914 161 CpG island CpG island 8727
Tssr143046 17 24548667 to 24548694 27 + TSS region transcription start site region 143046
Tssr143047 17 24548704 to 24548713 9 + TSS region transcription start site region 143047
Tssr143048 17 24549121 to 24549141 20 + TSS region transcription start site region 143048
Cpgi8728 17 24549563 to 24551086 1523 CpG island CpG island 8728
Pkd1 17 24549950 to 24596514 46564 + protein coding gene polycystin 1, transient receptor poteintial channel interacting
Tssr143049 17 24550025 to 24550033 8 + TSS region transcription start site region 143049
Tssr143050 17 24550045 to 24550062 17 + TSS region transcription start site region 143050
Tssr143051 17 24550064 to 24550098 34 + TSS region transcription start site region 143051
Tssr143052 17 24550103 to 24550116 13 + TSS region transcription start site region 143052
Tssr5033 17 24593139 to 24593152 13 + TSS region transcription start site region 5033
Gm24589 17 24594978 to 24595071 93 + miRNA gene predicted gene, 24589
Tsc2 17 24595816 to 24632627 36811 - protein coding gene tuberous sclerosis 2
Cpgi8729 17 24596821 to 24596981 160 CpG island CpG island 8729
Tssr146746 17 24599178 to 24599215 37 - TSS region transcription start site region 146746
Tssr146747 17 24608983 to 24609010 27 - TSS region transcription start site region 146747
Tssr146748 17 24614392 to 24614414 22 - TSS region transcription start site region 146748
Tssr146749 17 24614499 to 24614510 11 - TSS region transcription start site region 146749
Tssr146750 17 24614513 to 24614528 15 - TSS region transcription start site region 146750
Cpgi8730 17 24632232 to 24633028 796 CpG island CpG island 8730
Tssr146751 17 24632583 to 24632603 20 - TSS region transcription start site region 146751
Tssr146752 17 24632608 to 24632632 24 - TSS region transcription start site region 146752
Tssr143053 17 24632671 to 24632712 41 + TSS region transcription start site region 143053
Nthl1 17 24632682 to 24638838 6156 + protein coding gene nth (endonuclease III)-like 1 (E.coli)
Tssr143054 17 24632725 to 24632746 21 + TSS region transcription start site region 143054
Slc9a3r2 17 24639286 to 24650327 11041 - protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
Tssr143055 17 24639961 to 24640005 44 + TSS region transcription start site region 143055
Tssr146753 17 24640702 to 24640736 34 - TSS region transcription start site region 146753
Tssr143056 17 24640759 to 24640789 30 + TSS region transcription start site region 143056
Tssr146754 17 24644933 to 24644976 43 - TSS region transcription start site region 146754
Tssr146755 17 24644982 to 24644994 12 - TSS region transcription start site region 146755
Tssr146756 17 24645019 to 24645028 9 - TSS region transcription start site region 146756
Tssr146757 17 24647775 to 24647846 71 - TSS region transcription start site region 146757
Cpgi8731 17 24649448 to 24650616 1168 CpG island CpG island 8731
Tssr146758 17 24650270 to 24650311 41 - TSS region transcription start site region 146758
Cpgi8732 17 24654005 to 24654346 341 CpG island CpG island 8732
Cpgi8733 17 24657255 to 24657436 181 CpG island CpG island 8733
Npw 17 24657330 to 24658425 1095 - protein coding gene neuropeptide W
Cpgi8734 17 24657935 to 24658695 760 CpG island CpG island 8734
Tssr146759 17 24658506 to 24658516 10 - TSS region transcription start site region 146759
Tssr146760 17 24658539 to 24658557 18 - TSS region transcription start site region 146760
Tssr143057 17 24665982 to 24665996 14 + TSS region transcription start site region 143057
Cpgi8735 17 24669301 to 24670497 1196 CpG island CpG island 8735
Tssr143058 17 24669684 to 24669727 43 + TSS region transcription start site region 143058
Zfp598 17 24669693 to 24682016 12323 + protein coding gene zinc finger protein 598
Tssr143059 17 24669730 to 24669752 22 + TSS region transcription start site region 143059
Tssr146761 17 24670675 to 24670705 30 - TSS region transcription start site region 146761
Syngr3 17 24685092 to 24689949 4857 - protein coding gene synaptogyrin 3
Cpgi8736 17 24686391 to 24686807 416 CpG island CpG island 8736
Cpgi8737 17 24687316 to 24687871 555 CpG island CpG island 8737
Cpgi8738 17 24689505 to 24690239 734 CpG island CpG island 8738
Tssr146762 17 24689880 to 24689887 7 - TSS region transcription start site region 146762
Tssr146763 17 24689901 to 24689960 59 - TSS region transcription start site region 146763
Gfer 17 24693187 to 24696156 2969 - protein coding gene growth factor, augmenter of liver regeneration
Cpgi8739 17 24695604 to 24696747 1143 CpG island CpG island 8739
Tssr146764 17 24695987 to 24695996 9 - TSS region transcription start site region 146764
Tssr146765 17 24696065 to 24696108 43 - TSS region transcription start site region 146765
Tssr146766 17 24696121 to 24696136 15 - TSS region transcription start site region 146766
Tssr146767 17 24696147 to 24696166 19 - TSS region transcription start site region 146767
Tssr146768 17 24696197 to 24696206 9 - TSS region transcription start site region 146768
Noxo1 17 24696234 to 24700529 4295 + protein coding gene NADPH oxidase organizer 1
Tssr143060 17 24696276 to 24696320 44 + TSS region transcription start site region 143060
Tssr146769 17 24696505 to 24696536 31 - TSS region transcription start site region 146769
Tssr146770 17 24696541 to 24696553 12 - TSS region transcription start site region 146770
Tssr5034 17 24696556 to 24696565 9 - TSS region transcription start site region 5034
Tssr146771 17 24696569 to 24696585 16 - TSS region transcription start site region 146771
Tssr143061 17 24696660 to 24696664 4 + TSS region transcription start site region 143061