Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:24223895-24723922

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccnf 17 24223230 to 24251409 28179 - protein coding gene cyclin F
Tssr146721 17 24223987 to 24223995 8 - TSS region transcription start site region 146721
Mir5134 17 24234527 to 24234604 77 - miRNA gene microRNA 5134
Mir6965 17 24240884 to 24240947 63 - miRNA gene microRNA 6965
Cpgi8715 17 24250958 to 24251950 992 CpG island CpG island 8715
Tssr146722 17 24251322 to 24251381 59 - TSS region transcription start site region 146722
Tssr146723 17 24251382 to 24251397 15 - TSS region transcription start site region 146723
Tssr143017 17 24251660 to 24251679 19 + TSS region transcription start site region 143017
Tssr143018 17 24251964 to 24252010 46 + TSS region transcription start site region 143018
Tssr143019 17 24252584 to 24252589 5 + TSS region transcription start site region 143019
Abca17 17 24264259 to 24351068 86809 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 17
Tssr143020 17 24273997 to 24274001 4 + TSS region transcription start site region 143020
Gm24427 17 24304669 to 24304789 120 + miRNA gene predicted gene, 24427
Tssr146724 17 24316320 to 24316324 4 - TSS region transcription start site region 146724
D17Jcs14 17 24348701 to 24348935 234 DNA segment DNA segment, Chr 17, John C. Schimenti 14
Cpgi8716 17 24350823 to 24352855 2032 CpG island CpG island 8716
Tssr146725 17 24351053 to 24351064 11 - TSS region transcription start site region 146725
Tssr146726 17 24351072 to 24351108 36 - TSS region transcription start site region 146726
Tssr143021 17 24351937 to 24351948 11 + TSS region transcription start site region 143021
Tssr143022 17 24351954 to 24351968 14 + TSS region transcription start site region 143022
Tssr143023 17 24352017 to 24352028 11 + TSS region transcription start site region 143023
Abca3 17 24352023 to 24410204 58181 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 3
Tssr143024 17 24352037 to 24352149 112 + TSS region transcription start site region 143024
Gm25618 17 24362438 to 24362544 106 - snRNA gene predicted gene, 25618
D17Lon5 17 24378174 to 24378306 132 DNA segment DNA segment, Chr 17, London 5
Tssr143025 17 24398607 to 24398611 4 + TSS region transcription start site region 143025
D330041H03Rik 17 24409481 to 24414513 5032 - lncRNA gene RIKEN cDNA D330041H03 gene
Cpgi8717 17 24413760 to 24415433 1673 CpG island CpG island 8717
Tssr146727 17 24414397 to 24414451 54 - TSS region transcription start site region 146727
Tssr146728 17 24414470 to 24414484 14 - TSS region transcription start site region 146728
Tssr143026 17 24414640 to 24414691 51 + TSS region transcription start site region 143026
Rnps1 17 24414642 to 24425898 11256 + protein coding gene ribonucleic acid binding protein S1
Tssr143027 17 24414913 to 24414985 72 + TSS region transcription start site region 143027
Tssr146729 17 24415524 to 24415534 10 - TSS region transcription start site region 146729
Tssr143028 17 24419463 to 24419467 4 + TSS region transcription start site region 143028
Tssr143029 17 24424470 to 24424476 6 + TSS region transcription start site region 143029
Tssr143030 17 24425491 to 24425526 35 + TSS region transcription start site region 143030
Cpgi8718 17 24426417 to 24427115 698 CpG island CpG island 8718
Tssr143031 17 24426676 to 24426701 25 + TSS region transcription start site region 143031
Eci1 17 24426683 to 24439316 12633 + protein coding gene enoyl-Coenzyme A delta isomerase 1
Dnase1l2 17 24440081 to 24443105 3024 - protein coding gene deoxyribonuclease 1-like 2
Tssr146730 17 24440395 to 24440399 4 - TSS region transcription start site region 146730
Tssr146731 17 24442157 to 24442184 27 - TSS region transcription start site region 146731
Tssr146732 17 24443077 to 24443090 13 - TSS region transcription start site region 146732
Tssr146733 17 24443093 to 24443109 16 - TSS region transcription start site region 146733
E4f1 17 24443778 to 24455430 11652 - protein coding gene E4F transcription factor 1
Cpgi8719 17 24454606 to 24455577 971 CpG island CpG island 8719
Tssr143032 17 24454856 to 24454881 25 + TSS region transcription start site region 143032
BC026600 17 24454864 to 24457100 2236 unclassified gene cDNA sequence BC026600
Tssr146734 17 24455238 to 24455257 19 - TSS region transcription start site region 146734
Tssr146735 17 24455265 to 24455345 80 - TSS region transcription start site region 146735
4833447I15Rik 17 24461220 to 24470227 9007 - lncRNA gene RIKEN cDNA 4833447I15 gene
Cpgi8720 17 24469757 to 24471474 1717 CpG island CpG island 8720
Tssr143033 17 24470172 to 24470186 14 + TSS region transcription start site region 143033
Tssr143034 17 24470393 to 24470481 88 + TSS region transcription start site region 143034
Pgp 17 24470473 to 24471602 1129 + protein coding gene phosphoglycolate phosphatase
Tssr143035 17 24470486 to 24470503 17 + TSS region transcription start site region 143035
Tssr143036 17 24470821 to 24470835 14 + TSS region transcription start site region 143036
Mlst8 17 24473551 to 24479078 5527 - protein coding gene MTOR associated protein, LST8 homolog (S. cerevisiae)
Bricd5 17 24473884 to 24475469 1585 + protein coding gene BRICHOS domain containing 5
Tssr143037 17 24473895 to 24473922 27 + TSS region transcription start site region 143037
Tssr146736 17 24477591 to 24477604 13 - TSS region transcription start site region 146736
Tssr146737 17 24477611 to 24477622 11 - TSS region transcription start site region 146737
Cpgi8721 17 24478616 to 24479343 727 CpG island CpG island 8721
Tssr146738 17 24479034 to 24479083 49 - TSS region transcription start site region 146738
Gm50062 17 24483215 to 24485254 2039 + lincRNA gene predicted gene, 50062
Cpgi8722 17 24488007 to 24489657 1650 CpG island CpG island 8722
Tssr143038 17 24488404 to 24488450 46 + TSS region transcription start site region 143038
Tssr143039 17 24488583 to 24488666 83 + TSS region transcription start site region 143039
Caskin1 17 24488601 to 24508671 20070 + protein coding gene CASK interacting protein 1
Tssr143040 17 24488671 to 24488682 11 + TSS region transcription start site region 143040
Tssr143041 17 24488737 to 24488771 34 + TSS region transcription start site region 143041
Tssr143042 17 24488773 to 24488799 26 + TSS region transcription start site region 143042
Cpgi8723 17 24504900 to 24505551 651 CpG island CpG island 8723
Cpgi8724 17 24506412 to 24507356 944 CpG island CpG island 8724
Traf7 17 24508850 to 24527938 19088 - protein coding gene TNF receptor-associated factor 7
Tssr146739 17 24514977 to 24515013 36 - TSS region transcription start site region 146739
Cpgi8725 17 24527565 to 24528252 687 CpG island CpG island 8725
Tssr146740 17 24527814 to 24527829 15 - TSS region transcription start site region 146740
Tssr146741 17 24527830 to 24527884 54 - TSS region transcription start site region 146741
Tssr146742 17 24527896 to 24527907 11 - TSS region transcription start site region 146742
Tssr146743 17 24527925 to 24527935 10 - TSS region transcription start site region 146743
Tssr146744 17 24527937 to 24527951 14 - TSS region transcription start site region 146744
Tssr143043 17 24528243 to 24528264 21 + TSS region transcription start site region 143043
Rab26os 17 24528251 to 24528744 493 + antisense lncRNA gene RAB26, member RAS oncogene family, opposite strand
Snord60 17 24528476 to 24528553 77 + snoRNA gene small nucleolar RNA, C/D box 60
Rab26 17 24529054 to 24533747 4693 - protein coding gene RAB26, member RAS oncogene family
Tssr143044 17 24529107 to 24529108 1 + TSS region transcription start site region 143044
Cpgi8726 17 24533057 to 24533995 938 CpG island CpG island 8726
Tssr146745 17 24533709 to 24533732 23 - TSS region transcription start site region 146745
Gm33508 17 24533862 to 24546531 12669 + lncRNA gene predicted gene, 33508
Tssr143045 17 24533885 to 24533900 15 + TSS region transcription start site region 143045
Cpgi8727 17 24544753 to 24544914 161 CpG island CpG island 8727
Tssr143046 17 24548667 to 24548694 27 + TSS region transcription start site region 143046
Tssr143047 17 24548704 to 24548713 9 + TSS region transcription start site region 143047
Tssr143048 17 24549121 to 24549141 20 + TSS region transcription start site region 143048
Cpgi8728 17 24549563 to 24551086 1523 CpG island CpG island 8728
Pkd1 17 24549950 to 24596514 46564 + protein coding gene polycystin 1, transient receptor poteintial channel interacting
Tssr143049 17 24550025 to 24550033 8 + TSS region transcription start site region 143049
Tssr143050 17 24550045 to 24550062 17 + TSS region transcription start site region 143050
Tssr143051 17 24550064 to 24550098 34 + TSS region transcription start site region 143051
Tssr143052 17 24550103 to 24550116 13 + TSS region transcription start site region 143052
Tssr5033 17 24593139 to 24593152 13 + TSS region transcription start site region 5033
Gm24589 17 24594978 to 24595071 93 + miRNA gene predicted gene, 24589
Tsc2 17 24595816 to 24632627 36811 - protein coding gene tuberous sclerosis 2
Cpgi8729 17 24596821 to 24596981 160 CpG island CpG island 8729
Tssr146746 17 24599178 to 24599215 37 - TSS region transcription start site region 146746
Tssr146747 17 24608983 to 24609010 27 - TSS region transcription start site region 146747
Tssr146748 17 24614392 to 24614414 22 - TSS region transcription start site region 146748
Tssr146749 17 24614499 to 24614510 11 - TSS region transcription start site region 146749
Tssr146750 17 24614513 to 24614528 15 - TSS region transcription start site region 146750
Cpgi8730 17 24632232 to 24633028 796 CpG island CpG island 8730
Tssr146751 17 24632583 to 24632603 20 - TSS region transcription start site region 146751
Tssr146752 17 24632608 to 24632632 24 - TSS region transcription start site region 146752
Tssr143053 17 24632671 to 24632712 41 + TSS region transcription start site region 143053
Nthl1 17 24632682 to 24638838 6156 + protein coding gene nth (endonuclease III)-like 1 (E.coli)
Tssr143054 17 24632725 to 24632746 21 + TSS region transcription start site region 143054
Slc9a3r2 17 24639286 to 24650327 11041 - protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
Tssr143055 17 24639961 to 24640005 44 + TSS region transcription start site region 143055
Tssr146753 17 24640702 to 24640736 34 - TSS region transcription start site region 146753
Tssr143056 17 24640759 to 24640789 30 + TSS region transcription start site region 143056
Tssr146754 17 24644933 to 24644976 43 - TSS region transcription start site region 146754
Tssr146755 17 24644982 to 24644994 12 - TSS region transcription start site region 146755
Tssr146756 17 24645019 to 24645028 9 - TSS region transcription start site region 146756
Tssr146757 17 24647775 to 24647846 71 - TSS region transcription start site region 146757
Cpgi8731 17 24649448 to 24650616 1168 CpG island CpG island 8731
Tssr146758 17 24650270 to 24650311 41 - TSS region transcription start site region 146758
Cpgi8732 17 24654005 to 24654346 341 CpG island CpG island 8732
Cpgi8733 17 24657255 to 24657436 181 CpG island CpG island 8733
Npw 17 24657330 to 24658425 1095 - protein coding gene neuropeptide W
Cpgi8734 17 24657935 to 24658695 760 CpG island CpG island 8734
Tssr146759 17 24658506 to 24658516 10 - TSS region transcription start site region 146759
Tssr146760 17 24658539 to 24658557 18 - TSS region transcription start site region 146760
Tssr143057 17 24665982 to 24665996 14 + TSS region transcription start site region 143057
Cpgi8735 17 24669301 to 24670497 1196 CpG island CpG island 8735
Tssr143058 17 24669684 to 24669727 43 + TSS region transcription start site region 143058
Zfp598 17 24669693 to 24682016 12323 + protein coding gene zinc finger protein 598
Tssr143059 17 24669730 to 24669752 22 + TSS region transcription start site region 143059
Tssr146761 17 24670675 to 24670705 30 - TSS region transcription start site region 146761
Syngr3 17 24685092 to 24689949 4857 - protein coding gene synaptogyrin 3
Cpgi8736 17 24686391 to 24686807 416 CpG island CpG island 8736
Cpgi8737 17 24687316 to 24687871 555 CpG island CpG island 8737
Cpgi8738 17 24689505 to 24690239 734 CpG island CpG island 8738
Tssr146762 17 24689880 to 24689887 7 - TSS region transcription start site region 146762
Tssr146763 17 24689901 to 24689960 59 - TSS region transcription start site region 146763
Gfer 17 24693187 to 24696156 2969 - protein coding gene growth factor, augmenter of liver regeneration
Cpgi8739 17 24695604 to 24696747 1143 CpG island CpG island 8739
Tssr146764 17 24695987 to 24695996 9 - TSS region transcription start site region 146764
Tssr146765 17 24696065 to 24696108 43 - TSS region transcription start site region 146765
Tssr146766 17 24696121 to 24696136 15 - TSS region transcription start site region 146766
Tssr146767 17 24696147 to 24696166 19 - TSS region transcription start site region 146767
Tssr146768 17 24696197 to 24696206 9 - TSS region transcription start site region 146768
Noxo1 17 24696234 to 24700529 4295 + protein coding gene NADPH oxidase organizer 1
Tssr143060 17 24696276 to 24696320 44 + TSS region transcription start site region 143060
Tssr146769 17 24696505 to 24696536 31 - TSS region transcription start site region 146769
Tssr146770 17 24696541 to 24696553 12 - TSS region transcription start site region 146770
Tssr5034 17 24696556 to 24696565 9 - TSS region transcription start site region 5034
Tssr146771 17 24696569 to 24696585 16 - TSS region transcription start site region 146771
Tssr143061 17 24696660 to 24696664 4 + TSS region transcription start site region 143061
Tssr143062 17 24698220 to 24698252 32 + TSS region transcription start site region 143062
Tssr143063 17 24698294 to 24698345 51 + TSS region transcription start site region 143063
Tssr143064 17 24698349 to 24698371 22 + TSS region transcription start site region 143064
Tssr5035 17 24699799 to 24699807 8 + TSS region transcription start site region 5035
Tssr143065 17 24699903 to 24699905 2 + TSS region transcription start site region 143065
Tbl3 17 24700653 to 24707653 7000 - protein coding gene transducin (beta)-like 3
Cpgi8740 17 24707412 to 24707906 494 CpG island CpG island 8740
Tssr146772 17 24707607 to 24707610 3 - TSS region transcription start site region 146772
Tssr146773 17 24707617 to 24707661 44 - TSS region transcription start site region 146773
Rnf151 17 24715839 to 24718057 2218 - protein coding gene ring finger protein 151
Tssr146774 17 24718006 to 24718018 12 - TSS region transcription start site region 146774
Tssr146775 17 24718051 to 24718062 11 - TSS region transcription start site region 146775
Tssr143066 17 24718088 to 24718118 30 + TSS region transcription start site region 143066
Cpgi8741 17 24719520 to 24720535 1015 CpG island CpG island 8741
Snhg9 17 24719531 to 24719965 434 - antisense lncRNA gene small nucleolar RNA host gene 9
Snora78 17 24719676 to 24719803 127 - snoRNA gene small nucleolar RNA, H/ACA box 7
Tssr146776 17 24719889 to 24719916 27 - TSS region transcription start site region 146776
Tssr146777 17 24719918 to 24719929 11 - TSS region transcription start site region 146777
Tssr143067 17 24719953 to 24719956 3 + TSS region transcription start site region 143067
Tssr146778 17 24719959 to 24719970 11 - TSS region transcription start site region 146778
Tssr143068 17 24720043 to 24720057 14 + TSS region transcription start site region 143068
Rps2 17 24720063 to 24721927 1864 + protein coding gene ribosomal protein S2
Tssr143069 17 24720067 to 24720083 16 + TSS region transcription start site region 143069
Tssr143070 17 24720102 to 24720118 16 + TSS region transcription start site region 143070
Tssr143071 17 24720181 to 24720189 8 + TSS region transcription start site region 143071
Tssr143072 17 24720251 to 24720262 11 + TSS region transcription start site region 143072
Snora64 17 24720789 to 24720905 116 + snoRNA gene small nucleolar RNA, H/ACA box 64
Ndufb10 17 24722067 to 24724388 2321 - protein coding gene NADH:ubiquinone oxidoreductase subunit B10
Cpgi8742 17 24723854 to 24724717 863 CpG island CpG island 8742