Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:24094377-24324416

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdpk1 17 24073680 to 24150924 77244 - protein coding gene 3-phosphoinositide dependent protein kinase 1
Tssr146693 17 24097114 to 24097124 10 - TSS region transcription start site region 146693
Tssr146694 17 24098089 to 24098094 5 - TSS region transcription start site region 146694
Cpgi8707 17 24140887 to 24141966 1079 CpG island CpG island 8707
Tssr143003 17 24140915 to 24140936 21 + TSS region transcription start site region 143003
Tssr146695 17 24141542 to 24141591 49 - TSS region transcription start site region 146695
Gm33409 17 24141642 to 24142598 956 + lncRNA gene predicted gene, 33409
Gm50070 17 24145599 to 24147046 1447 - sense intronic lncRNA gene predicted gene, 50070
Tssr146696 17 24150866 to 24150881 15 - TSS region transcription start site region 146696
Tssr146697 17 24150886 to 24150907 21 - TSS region transcription start site region 146697
Tssr146698 17 24150910 to 24150928 18 - TSS region transcription start site region 146698
Tssr146699 17 24150942 to 24150950 8 - TSS region transcription start site region 146699
Cpgi8708 17 24151976 to 24152457 481 CpG island CpG island 8708
Tssr143004 17 24152089 to 24152100 11 + TSS region transcription start site region 143004
Amdhd2 17 24155833 to 24163733 7900 - protein coding gene amidohydrolase domain containing 2
Tssr143005 17 24162304 to 24162323 19 + TSS region transcription start site region 143005
Tssr143006 17 24162820 to 24162846 26 + TSS region transcription start site region 143006
Cpgi8709 17 24162933 to 24163885 952 CpG island CpG island 8709
Tssr146700 17 24163618 to 24163629 11 - TSS region transcription start site region 146700
Tssr146701 17 24163645 to 24163656 11 - TSS region transcription start site region 146701
Tssr146702 17 24163668 to 24163771 103 - TSS region transcription start site region 146702
Atp6v0c 17 24163866 to 24169429 5563 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit C
Tssr146703 17 24165044 to 24165067 23 - TSS region transcription start site region 146703
Tssr143007 17 24165258 to 24165269 11 + TSS region transcription start site region 143007
Tssr146704 17 24167430 to 24167437 7 - TSS region transcription start site region 146704
Cpgi8710 17 24168712 to 24170059 1347 CpG island CpG island 8710
Tssr146705 17 24168749 to 24168767 18 - TSS region transcription start site region 146705
Tssr143008 17 24168767 to 24168770 3 + TSS region transcription start site region 143008
Tssr146706 17 24168775 to 24168822 47 - TSS region transcription start site region 146706
Tssr146707 17 24168828 to 24168840 12 - TSS region transcription start site region 146707
Tssr146708 17 24169414 to 24169450 36 - TSS region transcription start site region 146708
Tssr5032 17 24169623 to 24169646 23 - TSS region transcription start site region 5032
Tssr146709 17 24169648 to 24169713 65 - TSS region transcription start site region 146709
Tssr143009 17 24169736 to 24169805 69 + TSS region transcription start site region 143009
Tssr143010 17 24169810 to 24169822 12 + TSS region transcription start site region 143010
Tssr143011 17 24169979 to 24169984 5 + TSS region transcription start site region 143011
Tssr146710 17 24170759 to 24170778 19 - TSS region transcription start site region 146710
Tssr146711 17 24170781 to 24170802 21 - TSS region transcription start site region 146711
Tssr146712 17 24170826 to 24170852 26 - TSS region transcription start site region 146712
Tssr143012 17 24170906 to 24170936 30 + TSS region transcription start site region 143012
Tssr143013 17 24170975 to 24171007 32 + TSS region transcription start site region 143013
Tssr143014 17 24171563 to 24171565 2 + TSS region transcription start site region 143014
Tssr146713 17 24171867 to 24171909 42 - TSS region transcription start site region 146713
Tssr143015 17 24172015 to 24172044 29 + TSS region transcription start site region 143015
Tssr143016 17 24172046 to 24172076 30 + TSS region transcription start site region 143016
Tbc1d24 17 24175431 to 24205562 30131 - protein coding gene TBC1 domain family, member 24
Tssr146714 17 24203093 to 24203106 13 - TSS region transcription start site region 146714
Ntn3 17 24203831 to 24209387 5556 - protein coding gene netrin 3
Cpgi8711 17 24204893 to 24207641 2748 CpG island CpG island 8711
Tssr146715 17 24205514 to 24205542 28 - TSS region transcription start site region 146715
Cpgi8712 17 24208502 to 24209632 1130 CpG island CpG island 8712
BC028777 17 24208861 to 24221730 12869 + unclassified non-coding RNA gene cDNA sequence BC028777
Tssr146716 17 24209377 to 24209416 39 - TSS region transcription start site region 146716
Cpgi8713 17 24211898 to 24212459 561 CpG island CpG island 8713
Tedc2 17 24215054 to 24220851 5797 - protein coding gene tubulin epsilon and delta complex 2
Cpgi8714 17 24220405 to 24220918 513 CpG island CpG island 8714
Tssr146717 17 24220617 to 24220641 24 - TSS region transcription start site region 146717
Tssr146718 17 24220695 to 24220704 9 - TSS region transcription start site region 146718
Tssr146719 17 24220708 to 24220737 29 - TSS region transcription start site region 146719
Tssr146720 17 24220738 to 24220803 65 - TSS region transcription start site region 146720
Ccnf 17 24223230 to 24251409 28179 - protein coding gene cyclin F
Tssr146721 17 24223987 to 24223995 8 - TSS region transcription start site region 146721
Mir5134 17 24234527 to 24234604 77 - miRNA gene microRNA 5134
Mir6965 17 24240884 to 24240947 63 - miRNA gene microRNA 6965
Cpgi8715 17 24250958 to 24251950 992 CpG island CpG island 8715
Tssr146722 17 24251322 to 24251381 59 - TSS region transcription start site region 146722
Tssr146723 17 24251382 to 24251397 15 - TSS region transcription start site region 146723
Tssr143017 17 24251660 to 24251679 19 + TSS region transcription start site region 143017
Tssr143018 17 24251964 to 24252010 46 + TSS region transcription start site region 143018
Tssr143019 17 24252584 to 24252589 5 + TSS region transcription start site region 143019
Abca17 17 24264259 to 24351068 86809 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 17
Tssr143020 17 24273997 to 24274001 4 + TSS region transcription start site region 143020
Gm24427 17 24304669 to 24304789 120 + miRNA gene predicted gene, 24427
Tssr146724 17 24316320 to 24316324 4 - TSS region transcription start site region 146724