Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:23880514-24530542

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dcpp1 17 23880876 to 23882853 1977 + protein coding gene demilune cell and parotid protein 1
Tssr142994 17 23880876 to 23880881 5 + TSS region transcription start site region 142994
Gm50058 17 23890115 to 23893588 3473 - pseudogene predicted gene, 50058
Tssr146680 17 23893607 to 23893613 6 - TSS region transcription start site region 146680
Gm50057 17 23896761 to 23916919 20158 - lincRNA gene predicted gene, 50057
D17Mit55a 17 23897842 to 23897997 155 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 55a
Tssr142995 17 23898717 to 23898722 5 + TSS region transcription start site region 142995
Dcpp2 17 23898722 to 23900788 2066 + protein coding gene demilune cell and parotid protein 2
Gm50059 17 23908236 to 23912371 4135 - pseudogene predicted gene, 50059
Gm41545 17 23913034 to 23925979 12945 - lncRNA gene predicted gene, 41545
D17Mit55b 17 23916569 to 23916738 169 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 55b
Tssr142996 17 23917455 to 23917460 5 + TSS region transcription start site region 142996
Dcpp3 17 23917458 to 23919441 1983 + protein coding gene demilune cell and parotid protein 3
Cpgi8701 17 23924431 to 23925108 677 CpG island CpG island 8701
Cpgi8702 17 23925126 to 23925419 293 CpG island CpG island 8702
Tssr142997 17 23941915 to 23941929 14 + TSS region transcription start site region 142997
Sbp 17 23941996 to 23945607 3611 + protein coding gene spermine binding protein
Tssr142998 17 23942369 to 23942374 5 + TSS region transcription start site region 142998
Sbpl 17 23953085 to 23955273 2188 - protein coding gene spermine binding protein-like
Tssr142999 17 23953291 to 23953300 9 + TSS region transcription start site region 142999
Tssr146681 17 23955268 to 23955302 34 - TSS region transcription start site region 146681
Tssr146682 17 23955329 to 23955357 28 - TSS region transcription start site region 146682
Gm41546 17 23967265 to 23977716 10451 + lncRNA gene predicted gene, 41546
Prss30 17 23972126 to 23980566 8440 - protein coding gene protease, serine 30
Tssr146683 17 23975183 to 23975235 52 - TSS region transcription start site region 146683
Tssr146684 17 23975533 to 23975540 7 - TSS region transcription start site region 146684
D17Jcs11 17 23976915 to 23977275 360 DNA segment DNA segment, Chr 17, John C. Schimenti 11
Tssr146685 17 23980562 to 23980582 20 - TSS region transcription start site region 146685
Prss22 17 23993534 to 23998100 4566 - protein coding gene protease, serine 22
Cpgi8703 17 23993571 to 23993772 201 CpG island CpG island 8703
Tssr146686 17 23998094 to 23998109 15 - TSS region transcription start site region 146686
Gm41547 17 24001817 to 24004846 3029 + lncRNA gene predicted gene, 41547
Gm50066 17 24004208 to 24004612 404 - pseudogene predicted gene, 50066
Gm27700 17 24010032 to 24010112 80 + miRNA gene predicted gene, 27700
Gm25092 17 24023200 to 24023328 128 - snoRNA gene predicted gene, 25092
Gm5225 17 24023774 to 24024281 507 + pseudogene predicted gene 5225
Tssr146687 17 24025233 to 24025239 6 - TSS region transcription start site region 146687
Cpgi8704 17 24030574 to 24031280 706 CpG island CpG island 8704
Cpgi8705 17 24031311 to 24031707 396 CpG island CpG island 8705
Tssr146688 17 24032329 to 24032342 13 - TSS region transcription start site region 146688
Tssr143000 17 24035325 to 24035333 8 + TSS region transcription start site region 143000
Tssr143001 17 24038223 to 24038228 5 + TSS region transcription start site region 143001
Tssr143002 17 24038236 to 24038249 13 + TSS region transcription start site region 143002
Prss27 17 24038243 to 24045949 7706 + protein coding gene protease, serine 27
Kctd5 17 24047734 to 24073485 25751 - protein coding gene potassium channel tetramerisation domain containing 5
D17Ertd262e 17 24052709 to 24052914 205 DNA segment DNA segment, Chr 17, ERATO Doi 262, expressed
Cpgi8706 17 24072956 to 24073745 789 CpG island CpG island 8706
Tssr146689 17 24073257 to 24073276 19 - TSS region transcription start site region 146689
Tssr146690 17 24073428 to 24073474 46 - TSS region transcription start site region 146690
Tssr146691 17 24073479 to 24073490 11 - TSS region transcription start site region 146691
Pdpk1 17 24073680 to 24150924 77244 - protein coding gene 3-phosphoinositide dependent protein kinase 1
Tssr146692 17 24078852 to 24078874 22 - TSS region transcription start site region 146692
Gm50071 17 24086864 to 24089879 3015 + antisense lncRNA gene predicted gene, 50071
Tssr146693 17 24097114 to 24097124 10 - TSS region transcription start site region 146693
Tssr146694 17 24098089 to 24098094 5 - TSS region transcription start site region 146694
Cpgi8707 17 24140887 to 24141966 1079 CpG island CpG island 8707
Tssr143003 17 24140915 to 24140936 21 + TSS region transcription start site region 143003
Tssr146695 17 24141542 to 24141591 49 - TSS region transcription start site region 146695
Gm33409 17 24141642 to 24142598 956 + lncRNA gene predicted gene, 33409
Gm50070 17 24145599 to 24147046 1447 - sense intronic lncRNA gene predicted gene, 50070
Tssr146696 17 24150866 to 24150881 15 - TSS region transcription start site region 146696
Tssr146697 17 24150886 to 24150907 21 - TSS region transcription start site region 146697
Tssr146698 17 24150910 to 24150928 18 - TSS region transcription start site region 146698
Tssr146699 17 24150942 to 24150950 8 - TSS region transcription start site region 146699
Cpgi8708 17 24151976 to 24152457 481 CpG island CpG island 8708
Tssr143004 17 24152089 to 24152100 11 + TSS region transcription start site region 143004
Amdhd2 17 24155833 to 24163733 7900 - protein coding gene amidohydrolase domain containing 2
Tssr143005 17 24162304 to 24162323 19 + TSS region transcription start site region 143005
Tssr143006 17 24162820 to 24162846 26 + TSS region transcription start site region 143006
Cpgi8709 17 24162933 to 24163885 952 CpG island CpG island 8709
Tssr146700 17 24163618 to 24163629 11 - TSS region transcription start site region 146700
Tssr146701 17 24163645 to 24163656 11 - TSS region transcription start site region 146701
Tssr146702 17 24163668 to 24163771 103 - TSS region transcription start site region 146702
Atp6v0c 17 24163866 to 24169429 5563 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit C
Tssr146703 17 24165044 to 24165067 23 - TSS region transcription start site region 146703
Tssr143007 17 24165258 to 24165269 11 + TSS region transcription start site region 143007
Tssr146704 17 24167430 to 24167437 7 - TSS region transcription start site region 146704
Cpgi8710 17 24168712 to 24170059 1347 CpG island CpG island 8710
Tssr146705 17 24168749 to 24168767 18 - TSS region transcription start site region 146705
Tssr143008 17 24168767 to 24168770 3 + TSS region transcription start site region 143008
Tssr146706 17 24168775 to 24168822 47 - TSS region transcription start site region 146706
Tssr146707 17 24168828 to 24168840 12 - TSS region transcription start site region 146707
Tssr146708 17 24169414 to 24169450 36 - TSS region transcription start site region 146708
Tssr5032 17 24169623 to 24169646 23 - TSS region transcription start site region 5032
Tssr146709 17 24169648 to 24169713 65 - TSS region transcription start site region 146709
Tssr143009 17 24169736 to 24169805 69 + TSS region transcription start site region 143009
Tssr143010 17 24169810 to 24169822 12 + TSS region transcription start site region 143010
Tssr143011 17 24169979 to 24169984 5 + TSS region transcription start site region 143011
Tssr146710 17 24170759 to 24170778 19 - TSS region transcription start site region 146710
Tssr146711 17 24170781 to 24170802 21 - TSS region transcription start site region 146711
Tssr146712 17 24170826 to 24170852 26 - TSS region transcription start site region 146712
Tssr143012 17 24170906 to 24170936 30 + TSS region transcription start site region 143012
Tssr143013 17 24170975 to 24171007 32 + TSS region transcription start site region 143013
Tssr143014 17 24171563 to 24171565 2 + TSS region transcription start site region 143014
Tssr146713 17 24171867 to 24171909 42 - TSS region transcription start site region 146713
Tssr143015 17 24172015 to 24172044 29 + TSS region transcription start site region 143015
Tssr143016 17 24172046 to 24172076 30 + TSS region transcription start site region 143016
Tbc1d24 17 24175431 to 24205562 30131 - protein coding gene TBC1 domain family, member 24
Tssr146714 17 24203093 to 24203106 13 - TSS region transcription start site region 146714
Ntn3 17 24203831 to 24209387 5556 - protein coding gene netrin 3
Cpgi8711 17 24204893 to 24207641 2748 CpG island CpG island 8711
Tssr146715 17 24205514 to 24205542 28 - TSS region transcription start site region 146715
Cpgi8712 17 24208502 to 24209632 1130 CpG island CpG island 8712
BC028777 17 24208861 to 24221730 12869 + unclassified non-coding RNA gene cDNA sequence BC028777
Tssr146716 17 24209377 to 24209416 39 - TSS region transcription start site region 146716
Cpgi8713 17 24211898 to 24212459 561 CpG island CpG island 8713
Tedc2 17 24215054 to 24220851 5797 - protein coding gene tubulin epsilon and delta complex 2
Cpgi8714 17 24220405 to 24220918 513 CpG island CpG island 8714
Tssr146717 17 24220617 to 24220641 24 - TSS region transcription start site region 146717
Tssr146718 17 24220695 to 24220704 9 - TSS region transcription start site region 146718
Tssr146719 17 24220708 to 24220737 29 - TSS region transcription start site region 146719
Tssr146720 17 24220738 to 24220803 65 - TSS region transcription start site region 146720
Ccnf 17 24223230 to 24251409 28179 - protein coding gene cyclin F
Tssr146721 17 24223987 to 24223995 8 - TSS region transcription start site region 146721
Mir5134 17 24234527 to 24234604 77 - miRNA gene microRNA 5134
Mir6965 17 24240884 to 24240947 63 - miRNA gene microRNA 6965
Cpgi8715 17 24250958 to 24251950 992 CpG island CpG island 8715
Tssr146722 17 24251322 to 24251381 59 - TSS region transcription start site region 146722
Tssr146723 17 24251382 to 24251397 15 - TSS region transcription start site region 146723
Tssr143017 17 24251660 to 24251679 19 + TSS region transcription start site region 143017
Tssr143018 17 24251964 to 24252010 46 + TSS region transcription start site region 143018
Tssr143019 17 24252584 to 24252589 5 + TSS region transcription start site region 143019
Abca17 17 24264259 to 24351068 86809 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 17
Tssr143020 17 24273997 to 24274001 4 + TSS region transcription start site region 143020
Gm24427 17 24304669 to 24304789 120 + miRNA gene predicted gene, 24427
Tssr146724 17 24316320 to 24316324 4 - TSS region transcription start site region 146724
D17Jcs14 17 24348701 to 24348935 234 DNA segment DNA segment, Chr 17, John C. Schimenti 14
Cpgi8716 17 24350823 to 24352855 2032 CpG island CpG island 8716
Tssr146725 17 24351053 to 24351064 11 - TSS region transcription start site region 146725
Tssr146726 17 24351072 to 24351108 36 - TSS region transcription start site region 146726
Tssr143021 17 24351937 to 24351948 11 + TSS region transcription start site region 143021
Tssr143022 17 24351954 to 24351968 14 + TSS region transcription start site region 143022
Tssr143023 17 24352017 to 24352028 11 + TSS region transcription start site region 143023
Abca3 17 24352023 to 24410204 58181 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 3
Tssr143024 17 24352037 to 24352149 112 + TSS region transcription start site region 143024
Gm25618 17 24362438 to 24362544 106 - snRNA gene predicted gene, 25618
D17Lon5 17 24378174 to 24378306 132 DNA segment DNA segment, Chr 17, London 5
Tssr143025 17 24398607 to 24398611 4 + TSS region transcription start site region 143025
D330041H03Rik 17 24409481 to 24414513 5032 - lncRNA gene RIKEN cDNA D330041H03 gene
Cpgi8717 17 24413760 to 24415433 1673 CpG island CpG island 8717
Tssr146727 17 24414397 to 24414451 54 - TSS region transcription start site region 146727
Tssr146728 17 24414470 to 24414484 14 - TSS region transcription start site region 146728
Tssr143026 17 24414640 to 24414691 51 + TSS region transcription start site region 143026
Rnps1 17 24414642 to 24425898 11256 + protein coding gene ribonucleic acid binding protein S1
Tssr143027 17 24414913 to 24414985 72 + TSS region transcription start site region 143027
Tssr146729 17 24415524 to 24415534 10 - TSS region transcription start site region 146729
Tssr143028 17 24419463 to 24419467 4 + TSS region transcription start site region 143028
Tssr143029 17 24424470 to 24424476 6 + TSS region transcription start site region 143029
Tssr143030 17 24425491 to 24425526 35 + TSS region transcription start site region 143030
Cpgi8718 17 24426417 to 24427115 698 CpG island CpG island 8718
Tssr143031 17 24426676 to 24426701 25 + TSS region transcription start site region 143031
Eci1 17 24426683 to 24439316 12633 + protein coding gene enoyl-Coenzyme A delta isomerase 1
Dnase1l2 17 24440081 to 24443105 3024 - protein coding gene deoxyribonuclease 1-like 2
Tssr146730 17 24440395 to 24440399 4 - TSS region transcription start site region 146730
Tssr146731 17 24442157 to 24442184 27 - TSS region transcription start site region 146731
Tssr146732 17 24443077 to 24443090 13 - TSS region transcription start site region 146732
Tssr146733 17 24443093 to 24443109 16 - TSS region transcription start site region 146733
E4f1 17 24443778 to 24455430 11652 - protein coding gene E4F transcription factor 1
Cpgi8719 17 24454606 to 24455577 971 CpG island CpG island 8719
Tssr143032 17 24454856 to 24454881 25 + TSS region transcription start site region 143032
BC026600 17 24454864 to 24457100 2236 unclassified gene cDNA sequence BC026600
Tssr146734 17 24455238 to 24455257 19 - TSS region transcription start site region 146734
Tssr146735 17 24455265 to 24455345 80 - TSS region transcription start site region 146735
4833447I15Rik 17 24461220 to 24470227 9007 - lncRNA gene RIKEN cDNA 4833447I15 gene
Cpgi8720 17 24469757 to 24471474 1717 CpG island CpG island 8720
Tssr143033 17 24470172 to 24470186 14 + TSS region transcription start site region 143033
Tssr143034 17 24470393 to 24470481 88 + TSS region transcription start site region 143034
Pgp 17 24470473 to 24471602 1129 + protein coding gene phosphoglycolate phosphatase
Tssr143035 17 24470486 to 24470503 17 + TSS region transcription start site region 143035
Tssr143036 17 24470821 to 24470835 14 + TSS region transcription start site region 143036
Mlst8 17 24473551 to 24479078 5527 - protein coding gene MTOR associated protein, LST8 homolog (S. cerevisiae)
Bricd5 17 24473884 to 24475469 1585 + protein coding gene BRICHOS domain containing 5
Tssr143037 17 24473895 to 24473922 27 + TSS region transcription start site region 143037
Tssr146736 17 24477591 to 24477604 13 - TSS region transcription start site region 146736
Tssr146737 17 24477611 to 24477622 11 - TSS region transcription start site region 146737
Cpgi8721 17 24478616 to 24479343 727 CpG island CpG island 8721
Tssr146738 17 24479034 to 24479083 49 - TSS region transcription start site region 146738
Gm50062 17 24483215 to 24485254 2039 + lincRNA gene predicted gene, 50062
Cpgi8722 17 24488007 to 24489657 1650 CpG island CpG island 8722
Tssr143038 17 24488404 to 24488450 46 + TSS region transcription start site region 143038
Tssr143039 17 24488583 to 24488666 83 + TSS region transcription start site region 143039
Caskin1 17 24488601 to 24508671 20070 + protein coding gene CASK interacting protein 1
Tssr143040 17 24488671 to 24488682 11 + TSS region transcription start site region 143040
Tssr143041 17 24488737 to 24488771 34 + TSS region transcription start site region 143041
Tssr143042 17 24488773 to 24488799 26 + TSS region transcription start site region 143042
Cpgi8723 17 24504900 to 24505551 651 CpG island CpG island 8723
Cpgi8724 17 24506412 to 24507356 944 CpG island CpG island 8724
Traf7 17 24508850 to 24527938 19088 - protein coding gene TNF receptor-associated factor 7
Tssr146739 17 24514977 to 24515013 36 - TSS region transcription start site region 146739
Cpgi8725 17 24527565 to 24528252 687 CpG island CpG island 8725
Tssr146740 17 24527814 to 24527829 15 - TSS region transcription start site region 146740
Tssr146741 17 24527830 to 24527884 54 - TSS region transcription start site region 146741
Tssr146742 17 24527896 to 24527907 11 - TSS region transcription start site region 146742
Tssr146743 17 24527925 to 24527935 10 - TSS region transcription start site region 146743
Tssr146744 17 24527937 to 24527951 14 - TSS region transcription start site region 146744
Tssr143043 17 24528243 to 24528264 21 + TSS region transcription start site region 143043
Rab26os 17 24528251 to 24528744 493 + antisense lncRNA gene RAB26, member RAS oncogene family, opposite strand
Snord60 17 24528476 to 24528553 77 + snoRNA gene small nucleolar RNA, C/D box 60
Rab26 17 24529054 to 24533747 4693 - protein coding gene RAB26, member RAS oncogene family
Tssr143044 17 24529107 to 24529108 1 + TSS region transcription start site region 143044