Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:23823085-24085273

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Srrm2 17 23790857 to 23824741 33884 + protein coding gene serine/arginine repetitive matrix 2
Mir5125 17 23823291 to 23823369 78 + miRNA gene microRNA 5125
Tssr142987 17 23824461 to 23824483 22 + TSS region transcription start site region 142987
Elob 17 23824740 to 23829109 4369 - protein coding gene elongin B
Cpgi8697 17 23828431 to 23829529 1098 CpG island CpG island 8697
Tssr146671 17 23828769 to 23828815 46 - TSS region transcription start site region 146671
Tssr146672 17 23828821 to 23828830 9 - TSS region transcription start site region 146672
Tssr146673 17 23829000 to 23829012 12 - TSS region transcription start site region 146673
Tssr146674 17 23829031 to 23829043 12 - TSS region transcription start site region 146674
Tssr146675 17 23829095 to 23829143 48 - TSS region transcription start site region 146675
Tssr146676 17 23829147 to 23829156 9 - TSS region transcription start site region 146676
Tssr146677 17 23829163 to 23829174 11 - TSS region transcription start site region 146677
Tssr142988 17 23829212 to 23829241 29 + TSS region transcription start site region 142988
Tssr142989 17 23829243 to 23829268 25 + TSS region transcription start site region 142989
Prss33 17 23833347 to 23836056 2709 - protein coding gene protease, serine 33
Prss41 17 23836785 to 23844172 7387 - protein coding gene protease, serine 41
Cpgi8698 17 23843420 to 23843597 177 CpG island CpG island 8698
Cpgi8699 17 23844000 to 23844177 177 CpG island CpG island 8699
Tssr146678 17 23844134 to 23844177 43 - TSS region transcription start site region 146678
Tssr146679 17 23844179 to 23844196 17 - TSS region transcription start site region 146679
Gm15947 17 23853159 to 23858647 5488 - antisense lncRNA gene predicted gene 15947
Tssr142990 17 23853519 to 23853541 22 + TSS region transcription start site region 142990
Tssr142991 17 23853752 to 23853780 28 + TSS region transcription start site region 142991
Prss32 17 23853772 to 23859776 6004 + protein coding gene protease, serine 32
Tssr5031 17 23857311 to 23857322 11 + TSS region transcription start site region 5031
Tssr142992 17 23867889 to 23867906 17 + TSS region transcription start site region 142992
Cpgi8700 17 23868019 to 23868348 329 CpG island CpG island 8700
Prss21 17 23868056 to 23873114 5058 + protein coding gene protease, serine 21
Tssr142993 17 23868078 to 23868125 47 + TSS region transcription start site region 142993
Tssr142994 17 23880876 to 23880881 5 + TSS region transcription start site region 142994
Dcpp1 17 23880876 to 23882853 1977 + protein coding gene demilune cell and parotid protein 1
Gm50058 17 23890115 to 23893588 3473 - pseudogene predicted gene, 50058
Tssr146680 17 23893607 to 23893613 6 - TSS region transcription start site region 146680
Gm50057 17 23896761 to 23916919 20158 - lincRNA gene predicted gene, 50057
D17Mit55a 17 23897842 to 23897997 155 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 55a
Tssr142995 17 23898717 to 23898722 5 + TSS region transcription start site region 142995
Dcpp2 17 23898722 to 23900788 2066 + protein coding gene demilune cell and parotid protein 2
Gm50059 17 23908236 to 23912371 4135 - pseudogene predicted gene, 50059
Gm41545 17 23913034 to 23925979 12945 - lncRNA gene predicted gene, 41545
D17Mit55b 17 23916569 to 23916738 169 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 55b
Tssr142996 17 23917455 to 23917460 5 + TSS region transcription start site region 142996
Dcpp3 17 23917458 to 23919441 1983 + protein coding gene demilune cell and parotid protein 3
Cpgi8701 17 23924431 to 23925108 677 CpG island CpG island 8701
Cpgi8702 17 23925126 to 23925419 293 CpG island CpG island 8702
Tssr142997 17 23941915 to 23941929 14 + TSS region transcription start site region 142997
Sbp 17 23941996 to 23945607 3611 + protein coding gene spermine binding protein
Tssr142998 17 23942369 to 23942374 5 + TSS region transcription start site region 142998
Sbpl 17 23953085 to 23955273 2188 - protein coding gene spermine binding protein-like
Tssr142999 17 23953291 to 23953300 9 + TSS region transcription start site region 142999
Tssr146681 17 23955268 to 23955302 34 - TSS region transcription start site region 146681
Tssr146682 17 23955329 to 23955357 28 - TSS region transcription start site region 146682
Gm41546 17 23967265 to 23977716 10451 + lncRNA gene predicted gene, 41546
Prss30 17 23972126 to 23980566 8440 - protein coding gene protease, serine 30
Tssr146683 17 23975183 to 23975235 52 - TSS region transcription start site region 146683
Tssr146684 17 23975533 to 23975540 7 - TSS region transcription start site region 146684
D17Jcs11 17 23976915 to 23977275 360 DNA segment DNA segment, Chr 17, John C. Schimenti 11
Tssr146685 17 23980562 to 23980582 20 - TSS region transcription start site region 146685
Prss22 17 23993534 to 23998100 4566 - protein coding gene protease, serine 22
Cpgi8703 17 23993571 to 23993772 201 CpG island CpG island 8703
Tssr146686 17 23998094 to 23998109 15 - TSS region transcription start site region 146686
Gm41547 17 24001817 to 24004846 3029 + lncRNA gene predicted gene, 41547
Gm50066 17 24004208 to 24004612 404 - pseudogene predicted gene, 50066
Gm27700 17 24010032 to 24010112 80 + miRNA gene predicted gene, 27700
Gm25092 17 24023200 to 24023328 128 - snoRNA gene predicted gene, 25092
Gm5225 17 24023774 to 24024281 507 + pseudogene predicted gene 5225
Tssr146687 17 24025233 to 24025239 6 - TSS region transcription start site region 146687
Cpgi8704 17 24030574 to 24031280 706 CpG island CpG island 8704
Cpgi8705 17 24031311 to 24031707 396 CpG island CpG island 8705
Tssr146688 17 24032329 to 24032342 13 - TSS region transcription start site region 146688
Tssr143000 17 24035325 to 24035333 8 + TSS region transcription start site region 143000
Tssr143001 17 24038223 to 24038228 5 + TSS region transcription start site region 143001
Tssr143002 17 24038236 to 24038249 13 + TSS region transcription start site region 143002
Prss27 17 24038243 to 24045949 7706 + protein coding gene protease, serine 27
Kctd5 17 24047734 to 24073485 25751 - protein coding gene potassium channel tetramerisation domain containing 5
D17Ertd262e 17 24052709 to 24052914 205 DNA segment DNA segment, Chr 17, ERATO Doi 262, expressed
Cpgi8706 17 24072956 to 24073745 789 CpG island CpG island 8706
Tssr146689 17 24073257 to 24073276 19 - TSS region transcription start site region 146689
Tssr146690 17 24073428 to 24073474 46 - TSS region transcription start site region 146690
Tssr146691 17 24073479 to 24073490 11 - TSS region transcription start site region 146691
Pdpk1 17 24073680 to 24150924 77244 - protein coding gene 3-phosphoinositide dependent protein kinase 1
Tssr146692 17 24078852 to 24078874 22 - TSS region transcription start site region 146692