Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:23681519-23931531

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cldn6 17 23679348 to 23682446 3098 + protein coding gene claudin 6
Tssr142947 17 23681542 to 23681553 11 + TSS region transcription start site region 142947
Tssr142948 17 23681795 to 23681810 15 + TSS region transcription start site region 142948
Cldn9 17 23682584 to 23684026 1442 - protein coding gene claudin 9
Cpgi8685 17 23683025 to 23683337 312 CpG island CpG island 8685
Tssr146646 17 23684019 to 23684032 13 - TSS region transcription start site region 146646
Tssr146647 17 23684329 to 23684340 11 - TSS region transcription start site region 146647
Cpgi8686 17 23699310 to 23700515 1205 CpG island CpG island 8686
Tssr146648 17 23700142 to 23700172 30 - TSS region transcription start site region 146648
Tssr146649 17 23700181 to 23700201 20 - TSS region transcription start site region 146649
1520401A03Rik 17 23704488 to 23722783 18295 - protein coding gene RIKEN cDNA 1520401A03 gene
Tssr146650 17 23721998 to 23722009 11 - TSS region transcription start site region 146650
Cpgi8687 17 23725976 to 23727319 1343 CpG island CpG island 8687
Tssr146651 17 23726264 to 23726307 43 - TSS region transcription start site region 146651
Pkmyt1 17 23726336 to 23736735 10399 + protein coding gene protein kinase, membrane associated tyrosine/threonine 1
Tssr142949 17 23726428 to 23726474 46 + TSS region transcription start site region 142949
Tssr142950 17 23726476 to 23726493 17 + TSS region transcription start site region 142950
Tssr142951 17 23726506 to 23726514 8 + TSS region transcription start site region 142951
Paqr4 17 23736186 to 23740867 4681 - protein coding gene progestin and adipoQ receptor family member IV
Cpgi8688 17 23739352 to 23740925 1573 CpG island CpG island 8688
Tssr146652 17 23740277 to 23740298 21 - TSS region transcription start site region 146652
Tssr146653 17 23740301 to 23740359 58 - TSS region transcription start site region 146653
Tssr146654 17 23740365 to 23740385 20 - TSS region transcription start site region 146654
Tssr146655 17 23740859 to 23740888 29 - TSS region transcription start site region 146655
Kremen2 17 23741197 to 23745833 4636 - protein coding gene kringle containing transmembrane protein 2
Cpgi8689 17 23741759 to 23742990 1231 CpG island CpG island 8689
Cpgi8690 17 23744589 to 23744771 182 CpG island CpG island 8690
Tssr146656 17 23745346 to 23745363 17 - TSS region transcription start site region 146656
Cpgi8691 17 23745467 to 23745986 519 CpG island CpG island 8691
9530082P21Rik 17 23749236 to 23754065 4829 + antisense lncRNA gene RIKEN cDNA 9530082P21 gene
Tssr142952 17 23749319 to 23749353 34 + TSS region transcription start site region 142952
Tssr142953 17 23749360 to 23749384 24 + TSS region transcription start site region 142953
Flywch1 17 23752793 to 23771602 18809 - protein coding gene FLYWCH-type zinc finger 1
Tssr146657 17 23755815 to 23755869 54 - TSS region transcription start site region 146657
Gm49163 17 23765261 to 23767118 1857 + antisense lncRNA gene predicted gene, 49163
Cpgi8692 17 23771030 to 23771827 797 CpG island CpG island 8692
Tssr146658 17 23771490 to 23771499 9 - TSS region transcription start site region 146658
Tssr146659 17 23771505 to 23771537 32 - TSS region transcription start site region 146659
Tssr146660 17 23771543 to 23771595 52 - TSS region transcription start site region 146660
Tssr146661 17 23771607 to 23771636 29 - TSS region transcription start site region 146661
Gm16275 17 23771841 to 23777763 5922 + antisense lncRNA gene predicted gene 16275
Flywch2 17 23776916 to 23786081 9165 - protein coding gene FLYWCH family member 2
Tssr146662 17 23777245 to 23777256 11 - TSS region transcription start site region 146662
Cpgi8693 17 23785771 to 23786320 549 CpG island CpG island 8693
Tssr146663 17 23786046 to 23786083 37 - TSS region transcription start site region 146663
Tssr146664 17 23786091 to 23786122 31 - TSS region transcription start site region 146664
Tssr146665 17 23786197 to 23786237 40 - TSS region transcription start site region 146665
Tssr146666 17 23789880 to 23789913 33 - TSS region transcription start site region 146666
Cpgi8694 17 23790451 to 23790814 363 CpG island CpG island 8694
Tssr142954 17 23790625 to 23790670 45 + TSS region transcription start site region 142954
Srrm2 17 23790857 to 23824741 33884 + protein coding gene serine/arginine repetitive matrix 2
Cpgi8695 17 23802608 to 23804068 1460 CpG island CpG island 8695
Tssr146667 17 23802820 to 23802852 32 - TSS region transcription start site region 146667
Tssr142955 17 23803179 to 23803237 58 + TSS region transcription start site region 142955
Tssr142956 17 23803615 to 23803684 69 + TSS region transcription start site region 142956
Tssr146668 17 23804014 to 23804027 13 - TSS region transcription start site region 146668
Tssr142957 17 23806519 to 23806531 12 + TSS region transcription start site region 142957
Cpgi8696 17 23806857 to 23807245 388 CpG island CpG island 8696
Tssr142958 17 23807068 to 23807122 54 + TSS region transcription start site region 142958
Tssr142959 17 23807131 to 23807167 36 + TSS region transcription start site region 142959
Tssr142960 17 23808060 to 23808073 13 + TSS region transcription start site region 142960
Tssr142961 17 23808136 to 23808147 11 + TSS region transcription start site region 142961
Tssr146669 17 23810006 to 23810053 47 - TSS region transcription start site region 146669
Tssr142962 17 23812364 to 23812378 14 + TSS region transcription start site region 142962
Tssr142963 17 23812500 to 23812522 22 + TSS region transcription start site region 142963
Gm49911 17 23813214 to 23813500 286 - pseudogene predicted gene, 49911
Tssr142964 17 23813419 to 23813466 47 + TSS region transcription start site region 142964
Tssr142965 17 23815116 to 23815191 75 + TSS region transcription start site region 142965
Tssr142966 17 23815196 to 23815238 42 + TSS region transcription start site region 142966
Tssr146670 17 23815241 to 23815270 29 - TSS region transcription start site region 146670
Tssr142967 17 23815272 to 23815284 12 + TSS region transcription start site region 142967
Tssr142968 17 23815287 to 23815305 18 + TSS region transcription start site region 142968
Tssr142969 17 23816055 to 23816067 12 + TSS region transcription start site region 142969
Tssr142970 17 23816084 to 23816101 17 + TSS region transcription start site region 142970
Tssr142971 17 23816152 to 23816170 18 + TSS region transcription start site region 142971
Tssr142972 17 23816197 to 23816208 11 + TSS region transcription start site region 142972
Tssr142973 17 23816211 to 23816231 20 + TSS region transcription start site region 142973
Tssr142974 17 23816248 to 23816269 21 + TSS region transcription start site region 142974
Tssr142975 17 23816272 to 23816289 17 + TSS region transcription start site region 142975
Tssr142976 17 23816300 to 23816318 18 + TSS region transcription start site region 142976
Tssr142977 17 23816358 to 23816375 17 + TSS region transcription start site region 142977
Tssr142978 17 23816403 to 23816417 14 + TSS region transcription start site region 142978
Tssr142979 17 23818945 to 23818956 11 + TSS region transcription start site region 142979
Tssr142980 17 23819957 to 23819973 16 + TSS region transcription start site region 142980
Tssr142981 17 23820942 to 23821025 83 + TSS region transcription start site region 142981
Tssr142982 17 23821026 to 23821047 21 + TSS region transcription start site region 142982
Tssr142983 17 23821079 to 23821092 13 + TSS region transcription start site region 142983
Tssr142984 17 23822152 to 23822157 5 + TSS region transcription start site region 142984
Tssr142985 17 23822451 to 23822465 14 + TSS region transcription start site region 142985
Tssr142986 17 23822490 to 23822504 14 + TSS region transcription start site region 142986
Mir5125 17 23823291 to 23823369 78 + miRNA gene microRNA 5125
Tssr142987 17 23824461 to 23824483 22 + TSS region transcription start site region 142987
Elob 17 23824740 to 23829109 4369 - protein coding gene elongin B
Cpgi8697 17 23828431 to 23829529 1098 CpG island CpG island 8697
Tssr146671 17 23828769 to 23828815 46 - TSS region transcription start site region 146671
Tssr146672 17 23828821 to 23828830 9 - TSS region transcription start site region 146672
Tssr146673 17 23829000 to 23829012 12 - TSS region transcription start site region 146673
Tssr146674 17 23829031 to 23829043 12 - TSS region transcription start site region 146674
Tssr146675 17 23829095 to 23829143 48 - TSS region transcription start site region 146675
Tssr146676 17 23829147 to 23829156 9 - TSS region transcription start site region 146676
Tssr146677 17 23829163 to 23829174 11 - TSS region transcription start site region 146677
Tssr142988 17 23829212 to 23829241 29 + TSS region transcription start site region 142988
Tssr142989 17 23829243 to 23829268 25 + TSS region transcription start site region 142989
Prss33 17 23833347 to 23836056 2709 - protein coding gene protease, serine 33
Prss41 17 23836785 to 23844172 7387 - protein coding gene protease, serine 41
Cpgi8698 17 23843420 to 23843597 177 CpG island CpG island 8698
Cpgi8699 17 23844000 to 23844177 177 CpG island CpG island 8699
Tssr146678 17 23844134 to 23844177 43 - TSS region transcription start site region 146678
Tssr146679 17 23844179 to 23844196 17 - TSS region transcription start site region 146679
Gm15947 17 23853159 to 23858647 5488 - antisense lncRNA gene predicted gene 15947
Tssr142990 17 23853519 to 23853541 22 + TSS region transcription start site region 142990
Tssr142991 17 23853752 to 23853780 28 + TSS region transcription start site region 142991
Prss32 17 23853772 to 23859776 6004 + protein coding gene protease, serine 32
Tssr5031 17 23857311 to 23857322 11 + TSS region transcription start site region 5031
Tssr142992 17 23867889 to 23867906 17 + TSS region transcription start site region 142992
Cpgi8700 17 23868019 to 23868348 329 CpG island CpG island 8700
Prss21 17 23868056 to 23873114 5058 + protein coding gene protease, serine 21
Tssr142993 17 23868078 to 23868125 47 + TSS region transcription start site region 142993
Dcpp1 17 23880876 to 23882853 1977 + protein coding gene demilune cell and parotid protein 1
Tssr142994 17 23880876 to 23880881 5 + TSS region transcription start site region 142994
Gm50058 17 23890115 to 23893588 3473 - pseudogene predicted gene, 50058
Tssr146680 17 23893607 to 23893613 6 - TSS region transcription start site region 146680
Gm50057 17 23896761 to 23916919 20158 - lincRNA gene predicted gene, 50057
D17Mit55a 17 23897842 to 23897997 155 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 55a
Tssr142995 17 23898717 to 23898722 5 + TSS region transcription start site region 142995
Dcpp2 17 23898722 to 23900788 2066 + protein coding gene demilune cell and parotid protein 2
Gm50059 17 23908236 to 23912371 4135 - pseudogene predicted gene, 50059
Gm41545 17 23913034 to 23925979 12945 - lncRNA gene predicted gene, 41545
D17Mit55b 17 23916569 to 23916738 169 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 55b
Tssr142996 17 23917455 to 23917460 5 + TSS region transcription start site region 142996
Dcpp3 17 23917458 to 23919441 1983 + protein coding gene demilune cell and parotid protein 3
Cpgi8701 17 23924431 to 23925108 677 CpG island CpG island 8701
Cpgi8702 17 23925126 to 23925419 293 CpG island CpG island 8702