Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:23679444-28009472

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1423 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obrq13 17 11979442 to 24857795 12878353 QTL obesity resistance QTL 13
Ceat1 17 12417795 to 26182159 13764364 QTL chronic experimental autoimmune thyroiditis 1
Rtmq1 17 22681055 to 25502498 2821443 QTL renal tumor modifier QTL 1
Cpgi8684 17 23679292 to 23679881 589 CpG island CpG island 8684
Cldn6 17 23679348 to 23682446 3098 + protein coding gene claudin 6
Tssr142944 17 23679672 to 23679736 64 + TSS region transcription start site region 142944
Tssr142945 17 23679737 to 23679755 18 + TSS region transcription start site region 142945
Tssr146645 17 23680430 to 23680442 12 - TSS region transcription start site region 146645
Tssr142946 17 23681038 to 23681058 20 + TSS region transcription start site region 142946
Tssr142947 17 23681542 to 23681553 11 + TSS region transcription start site region 142947
Tssr142948 17 23681795 to 23681810 15 + TSS region transcription start site region 142948
Cldn9 17 23682584 to 23684026 1442 - protein coding gene claudin 9
Cpgi8685 17 23683025 to 23683337 312 CpG island CpG island 8685
Tssr146646 17 23684019 to 23684032 13 - TSS region transcription start site region 146646
Tssr146647 17 23684329 to 23684340 11 - TSS region transcription start site region 146647
Cpgi8686 17 23699310 to 23700515 1205 CpG island CpG island 8686
Tssr146648 17 23700142 to 23700172 30 - TSS region transcription start site region 146648
Tssr146649 17 23700181 to 23700201 20 - TSS region transcription start site region 146649
1520401A03Rik 17 23704488 to 23722783 18295 - protein coding gene RIKEN cDNA 1520401A03 gene
Tssr146650 17 23721998 to 23722009 11 - TSS region transcription start site region 146650
Cpgi8687 17 23725976 to 23727319 1343 CpG island CpG island 8687
Tssr146651 17 23726264 to 23726307 43 - TSS region transcription start site region 146651
Pkmyt1 17 23726336 to 23736735 10399 + protein coding gene protein kinase, membrane associated tyrosine/threonine 1
Tssr142949 17 23726428 to 23726474 46 + TSS region transcription start site region 142949
Tssr142950 17 23726476 to 23726493 17 + TSS region transcription start site region 142950
Tssr142951 17 23726506 to 23726514 8 + TSS region transcription start site region 142951
Paqr4 17 23736186 to 23740867 4681 - protein coding gene progestin and adipoQ receptor family member IV
Cpgi8688 17 23739352 to 23740925 1573 CpG island CpG island 8688
Tssr146652 17 23740277 to 23740298 21 - TSS region transcription start site region 146652
Tssr146653 17 23740301 to 23740359 58 - TSS region transcription start site region 146653
Tssr146654 17 23740365 to 23740385 20 - TSS region transcription start site region 146654
Tssr146655 17 23740859 to 23740888 29 - TSS region transcription start site region 146655
Kremen2 17 23741197 to 23745833 4636 - protein coding gene kringle containing transmembrane protein 2
Cpgi8689 17 23741759 to 23742990 1231 CpG island CpG island 8689
Cpgi8690 17 23744589 to 23744771 182 CpG island CpG island 8690
Tssr146656 17 23745346 to 23745363 17 - TSS region transcription start site region 146656
Cpgi8691 17 23745467 to 23745986 519 CpG island CpG island 8691
9530082P21Rik 17 23749236 to 23754065 4829 + antisense lncRNA gene RIKEN cDNA 9530082P21 gene
Tssr142952 17 23749319 to 23749353 34 + TSS region transcription start site region 142952
Tssr142953 17 23749360 to 23749384 24 + TSS region transcription start site region 142953
Flywch1 17 23752793 to 23771602 18809 - protein coding gene FLYWCH-type zinc finger 1
Tssr146657 17 23755815 to 23755869 54 - TSS region transcription start site region 146657
Gm49163 17 23765261 to 23767118 1857 + antisense lncRNA gene predicted gene, 49163
Cpgi8692 17 23771030 to 23771827 797 CpG island CpG island 8692
Tssr146658 17 23771490 to 23771499 9 - TSS region transcription start site region 146658
Tssr146659 17 23771505 to 23771537 32 - TSS region transcription start site region 146659
Tssr146660 17 23771543 to 23771595 52 - TSS region transcription start site region 146660
Tssr146661 17 23771607 to 23771636 29 - TSS region transcription start site region 146661
Gm16275 17 23771841 to 23777763 5922 + antisense lncRNA gene predicted gene 16275
Flywch2 17 23776916 to 23786081 9165 - protein coding gene FLYWCH family member 2
Tssr146662 17 23777245 to 23777256 11 - TSS region transcription start site region 146662
Cpgi8693 17 23785771 to 23786320 549 CpG island CpG island 8693
Tssr146663 17 23786046 to 23786083 37 - TSS region transcription start site region 146663
Tssr146664 17 23786091 to 23786122 31 - TSS region transcription start site region 146664
Tssr146665 17 23786197 to 23786237 40 - TSS region transcription start site region 146665
Tssr146666 17 23789880 to 23789913 33 - TSS region transcription start site region 146666
Cpgi8694 17 23790451 to 23790814 363 CpG island CpG island 8694
Tssr142954 17 23790625 to 23790670 45 + TSS region transcription start site region 142954
Srrm2 17 23790857 to 23824741 33884 + protein coding gene serine/arginine repetitive matrix 2
Cpgi8695 17 23802608 to 23804068 1460 CpG island CpG island 8695
Tssr146667 17 23802820 to 23802852 32 - TSS region transcription start site region 146667
Tssr142955 17 23803179 to 23803237 58 + TSS region transcription start site region 142955
Tssr142956 17 23803615 to 23803684 69 + TSS region transcription start site region 142956
Tssr146668 17 23804014 to 23804027 13 - TSS region transcription start site region 146668
Tssr142957 17 23806519 to 23806531 12 + TSS region transcription start site region 142957
Cpgi8696 17 23806857 to 23807245 388 CpG island CpG island 8696
Tssr142958 17 23807068 to 23807122 54 + TSS region transcription start site region 142958
Tssr142959 17 23807131 to 23807167 36 + TSS region transcription start site region 142959
Tssr142960 17 23808060 to 23808073 13 + TSS region transcription start site region 142960
Tssr142961 17 23808136 to 23808147 11 + TSS region transcription start site region 142961
Tssr146669 17 23810006 to 23810053 47 - TSS region transcription start site region 146669
Tssr142962 17 23812364 to 23812378 14 + TSS region transcription start site region 142962
Tssr142963 17 23812500 to 23812522 22 + TSS region transcription start site region 142963
Gm49911 17 23813214 to 23813500 286 - pseudogene predicted gene, 49911
Tssr142964 17 23813419 to 23813466 47 + TSS region transcription start site region 142964
Tssr142965 17 23815116 to 23815191 75 + TSS region transcription start site region 142965
Tssr142966 17 23815196 to 23815238 42 + TSS region transcription start site region 142966
Tssr146670 17 23815241 to 23815270 29 - TSS region transcription start site region 146670
Tssr142967 17 23815272 to 23815284 12 + TSS region transcription start site region 142967
Tssr142968 17 23815287 to 23815305 18 + TSS region transcription start site region 142968
Tssr142969 17 23816055 to 23816067 12 + TSS region transcription start site region 142969
Tssr142970 17 23816084 to 23816101 17 + TSS region transcription start site region 142970
Tssr142971 17 23816152 to 23816170 18 + TSS region transcription start site region 142971
Tssr142972 17 23816197 to 23816208 11 + TSS region transcription start site region 142972
Tssr142973 17 23816211 to 23816231 20 + TSS region transcription start site region 142973
Tssr142974 17 23816248 to 23816269 21 + TSS region transcription start site region 142974
Tssr142975 17 23816272 to 23816289 17 + TSS region transcription start site region 142975
Tssr142976 17 23816300 to 23816318 18 + TSS region transcription start site region 142976
Tssr142977 17 23816358 to 23816375 17 + TSS region transcription start site region 142977
Tssr142978 17 23816403 to 23816417 14 + TSS region transcription start site region 142978
Tssr142979 17 23818945 to 23818956 11 + TSS region transcription start site region 142979
Tssr142980 17 23819957 to 23819973 16 + TSS region transcription start site region 142980
Tssr142981 17 23820942 to 23821025 83 + TSS region transcription start site region 142981
Tssr142982 17 23821026 to 23821047 21 + TSS region transcription start site region 142982
Tssr142983 17 23821079 to 23821092 13 + TSS region transcription start site region 142983
Tssr142984 17 23822152 to 23822157 5 + TSS region transcription start site region 142984
Tssr142985 17 23822451 to 23822465 14 + TSS region transcription start site region 142985
Tssr142986 17 23822490 to 23822504 14 + TSS region transcription start site region 142986
Mir5125 17 23823291 to 23823369 78 + miRNA gene microRNA 5125
Tssr142987 17 23824461 to 23824483 22 + TSS region transcription start site region 142987
Elob 17 23824740 to 23829109 4369 - protein coding gene elongin B
Cpgi8697 17 23828431 to 23829529 1098 CpG island CpG island 8697
Tssr146671 17 23828769 to 23828815 46 - TSS region transcription start site region 146671
Tssr146672 17 23828821 to 23828830 9 - TSS region transcription start site region 146672
Tssr146673 17 23829000 to 23829012 12 - TSS region transcription start site region 146673
Tssr146674 17 23829031 to 23829043 12 - TSS region transcription start site region 146674
Tssr146675 17 23829095 to 23829143 48 - TSS region transcription start site region 146675
Tssr146676 17 23829147 to 23829156 9 - TSS region transcription start site region 146676
Tssr146677 17 23829163 to 23829174 11 - TSS region transcription start site region 146677
Tssr142988 17 23829212 to 23829241 29 + TSS region transcription start site region 142988
Tssr142989 17 23829243 to 23829268 25 + TSS region transcription start site region 142989
Prss33 17 23833347 to 23836056 2709 - protein coding gene protease, serine 33
Prss41 17 23836785 to 23844172 7387 - protein coding gene protease, serine 41
Cpgi8698 17 23843420 to 23843597 177 CpG island CpG island 8698
Cpgi8699 17 23844000 to 23844177 177 CpG island CpG island 8699
Tssr146678 17 23844134 to 23844177 43 - TSS region transcription start site region 146678
Tssr146679 17 23844179 to 23844196 17 - TSS region transcription start site region 146679
Gm15947 17 23853159 to 23858647 5488 - antisense lncRNA gene predicted gene 15947
Tssr142990 17 23853519 to 23853541 22 + TSS region transcription start site region 142990
Tssr142991 17 23853752 to 23853780 28 + TSS region transcription start site region 142991
Prss32 17 23853772 to 23859776 6004 + protein coding gene protease, serine 32
Tssr5031 17 23857311 to 23857322 11 + TSS region transcription start site region 5031
Tssr142992 17 23867889 to 23867906 17 + TSS region transcription start site region 142992
Cpgi8700 17 23868019 to 23868348 329 CpG island CpG island 8700
Prss21 17 23868056 to 23873114 5058 + protein coding gene protease, serine 21
Tssr142993 17 23868078 to 23868125 47 + TSS region transcription start site region 142993
Tssr142994 17 23880876 to 23880881 5 + TSS region transcription start site region 142994
Dcpp1 17 23880876 to 23882853 1977 + protein coding gene demilune cell and parotid protein 1
Gm50058 17 23890115 to 23893588 3473 - pseudogene predicted gene, 50058
Tssr146680 17 23893607 to 23893613 6 - TSS region transcription start site region 146680
Gm50057 17 23896761 to 23916919 20158 - lincRNA gene predicted gene, 50057
D17Mit55a 17 23897842 to 23897997 155 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 55a
Tssr142995 17 23898717 to 23898722 5 + TSS region transcription start site region 142995
Dcpp2 17 23898722 to 23900788 2066 + protein coding gene demilune cell and parotid protein 2
Gm50059 17 23908236 to 23912371 4135 - pseudogene predicted gene, 50059
Gm41545 17 23913034 to 23925979 12945 - lncRNA gene predicted gene, 41545
D17Mit55b 17 23916569 to 23916738 169 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 55b
Tssr142996 17 23917455 to 23917460 5 + TSS region transcription start site region 142996
Dcpp3 17 23917458 to 23919441 1983 + protein coding gene demilune cell and parotid protein 3
Cpgi8701 17 23924431 to 23925108 677 CpG island CpG island 8701
Cpgi8702 17 23925126 to 23925419 293 CpG island CpG island 8702
Tssr142997 17 23941915 to 23941929 14 + TSS region transcription start site region 142997
Sbp 17 23941996 to 23945607 3611 + protein coding gene spermine binding protein
Tssr142998 17 23942369 to 23942374 5 + TSS region transcription start site region 142998
Sbpl 17 23953085 to 23955273 2188 - protein coding gene spermine binding protein-like
Tssr142999 17 23953291 to 23953300 9 + TSS region transcription start site region 142999
Tssr146681 17 23955268 to 23955302 34 - TSS region transcription start site region 146681
Tssr146682 17 23955329 to 23955357 28 - TSS region transcription start site region 146682
Gm41546 17 23967265 to 23977716 10451 + lncRNA gene predicted gene, 41546
Prss30 17 23972126 to 23980566 8440 - protein coding gene protease, serine 30
Tssr146683 17 23975183 to 23975235 52 - TSS region transcription start site region 146683
Tssr146684 17 23975533 to 23975540 7 - TSS region transcription start site region 146684
D17Jcs11 17 23976915 to 23977275 360 DNA segment DNA segment, Chr 17, John C. Schimenti 11
Tssr146685 17 23980562 to 23980582 20 - TSS region transcription start site region 146685
Prss22 17 23993534 to 23998100 4566 - protein coding gene protease, serine 22
Cpgi8703 17 23993571 to 23993772 201 CpG island CpG island 8703
Tssr146686 17 23998094 to 23998109 15 - TSS region transcription start site region 146686
Gm41547 17 24001817 to 24004846 3029 + lncRNA gene predicted gene, 41547
Gm50066 17 24004208 to 24004612 404 - pseudogene predicted gene, 50066
Gm27700 17 24010032 to 24010112 80 + miRNA gene predicted gene, 27700
Gm25092 17 24023200 to 24023328 128 - snoRNA gene predicted gene, 25092
Gm5225 17 24023774 to 24024281 507 + pseudogene predicted gene 5225
Tssr146687 17 24025233 to 24025239 6 - TSS region transcription start site region 146687
Cpgi8704 17 24030574 to 24031280 706 CpG island CpG island 8704
Cpgi8705 17 24031311 to 24031707 396 CpG island CpG island 8705
Tssr146688 17 24032329 to 24032342 13 - TSS region transcription start site region 146688
Tssr143000 17 24035325 to 24035333 8 + TSS region transcription start site region 143000
Tssr143001 17 24038223 to 24038228 5 + TSS region transcription start site region 143001
Tssr143002 17 24038236 to 24038249 13 + TSS region transcription start site region 143002
Prss27 17 24038243 to 24045949 7706 + protein coding gene protease, serine 27
Kctd5 17 24047734 to 24073485 25751 - protein coding gene potassium channel tetramerisation domain containing 5
D17Ertd262e 17 24052709 to 24052914 205 DNA segment DNA segment, Chr 17, ERATO Doi 262, expressed
Cpgi8706 17 24072956 to 24073745 789 CpG island CpG island 8706
Tssr146689 17 24073257 to 24073276 19 - TSS region transcription start site region 146689
Tssr146690 17 24073428 to 24073474 46 - TSS region transcription start site region 146690
Tssr146691 17 24073479 to 24073490 11 - TSS region transcription start site region 146691
Pdpk1 17 24073680 to 24150924 77244 - protein coding gene 3-phosphoinositide dependent protein kinase 1
Tssr146692 17 24078852 to 24078874 22 - TSS region transcription start site region 146692
Gm50071 17 24086864 to 24089879 3015 + antisense lncRNA gene predicted gene, 50071
Tssr146693 17 24097114 to 24097124 10 - TSS region transcription start site region 146693
Tssr146694 17 24098089 to 24098094 5 - TSS region transcription start site region 146694
Cpgi8707 17 24140887 to 24141966 1079 CpG island CpG island 8707
Tssr143003 17 24140915 to 24140936 21 + TSS region transcription start site region 143003
Tssr146695 17 24141542 to 24141591 49 - TSS region transcription start site region 146695
Gm33409 17 24141642 to 24142598 956 + lncRNA gene predicted gene, 33409
Gm50070 17 24145599 to 24147046 1447 - sense intronic lncRNA gene predicted gene, 50070
Tssr146696 17 24150866 to 24150881 15 - TSS region transcription start site region 146696
Tssr146697 17 24150886 to 24150907 21 - TSS region transcription start site region 146697
Tssr146698 17 24150910 to 24150928 18 - TSS region transcription start site region 146698
Tssr146699 17 24150942 to 24150950 8 - TSS region transcription start site region 146699
Cpgi8708 17 24151976 to 24152457 481 CpG island CpG island 8708
Tssr143004 17 24152089 to 24152100 11 + TSS region transcription start site region 143004
Amdhd2 17 24155833 to 24163733 7900 - protein coding gene amidohydrolase domain containing 2
Tssr143005 17 24162304 to 24162323 19 + TSS region transcription start site region 143005
Tssr143006 17 24162820 to 24162846 26 + TSS region transcription start site region 143006
Cpgi8709 17 24162933 to 24163885 952 CpG island CpG island 8709
Tssr146700 17 24163618 to 24163629 11 - TSS region transcription start site region 146700
Tssr146701 17 24163645 to 24163656 11 - TSS region transcription start site region 146701
Tssr146702 17 24163668 to 24163771 103 - TSS region transcription start site region 146702
Atp6v0c 17 24163866 to 24169429 5563 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit C