Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:23654488-23772783

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8680 17 23660406 to 23661086 680 CpG island CpG island 8680
Tssr142938 17 23660477 to 23660525 48 + TSS region transcription start site region 142938
Bicdl2 17 23660506 to 23668621 8115 + protein coding gene BICD family like cargo adaptor 2
Tssr142939 17 23665010 to 23665016 6 + TSS region transcription start site region 142939
Cpgi8681 17 23665370 to 23665567 197 CpG island CpG island 8681
Thoc6 17 23668614 to 23673882 5268 - protein coding gene THO complex 6
Tssr146627 17 23669921 to 23669938 17 - TSS region transcription start site region 146627
Tssr146628 17 23669946 to 23669967 21 - TSS region transcription start site region 146628
Tssr146629 17 23669969 to 23670004 35 - TSS region transcription start site region 146629
Tssr5030 17 23670009 to 23670010 1 - TSS region transcription start site region 5030
Tssr146630 17 23670785 to 23670792 7 - TSS region transcription start site region 146630
Tssr146631 17 23670863 to 23670873 10 - TSS region transcription start site region 146631
Tssr146632 17 23670890 to 23670913 23 - TSS region transcription start site region 146632
Tssr146633 17 23670924 to 23670941 17 - TSS region transcription start site region 146633
Tssr146634 17 23670943 to 23670944 1 - TSS region transcription start site region 146634
Cpgi8682 17 23673381 to 23674113 732 CpG island CpG island 8682
Tssr146635 17 23673557 to 23673577 20 - TSS region transcription start site region 146635
Tssr142940 17 23673581 to 23673652 71 + TSS region transcription start site region 142940
Hcfc1r1 17 23673596 to 23675227 1631 + protein coding gene host cell factor C1 regulator 1 (XPO1-dependent)
Tssr146636 17 23673825 to 23673887 62 - TSS region transcription start site region 146636
Tssr142941 17 23673898 to 23673987 89 + TSS region transcription start site region 142941
Tssr142942 17 23673990 to 23674001 11 + TSS region transcription start site region 142942
Pbft7 17 23674962 to 23674962 0 QTL percent body fat 7
Tssr146637 17 23675059 to 23675104 45 - TSS region transcription start site region 146637
Tnfrsf12a 17 23675445 to 23677449 2004 - protein coding gene tumor necrosis factor receptor superfamily, member 12a
Tssr146638 17 23675851 to 23675888 37 - TSS region transcription start site region 146638
Cpgi8683 17 23676440 to 23677628 1188 CpG island CpG island 8683
Tssr146639 17 23676562 to 23676583 21 - TSS region transcription start site region 146639
Tssr146640 17 23676587 to 23676629 42 - TSS region transcription start site region 146640
Tssr146641 17 23676641 to 23676646 5 - TSS region transcription start site region 146641
Tssr146642 17 23676660 to 23676684 24 - TSS region transcription start site region 146642
Tssr146643 17 23677432 to 23677456 24 - TSS region transcription start site region 146643
Tssr146644 17 23677477 to 23677484 7 - TSS region transcription start site region 146644
Cpgi8684 17 23679292 to 23679881 589 CpG island CpG island 8684
Cldn6 17 23679348 to 23682446 3098 + protein coding gene claudin 6
Tssr142943 17 23679363 to 23679377 14 + TSS region transcription start site region 142943
Tssr142944 17 23679672 to 23679736 64 + TSS region transcription start site region 142944
Tssr142945 17 23679737 to 23679755 18 + TSS region transcription start site region 142945
Tssr146645 17 23680430 to 23680442 12 - TSS region transcription start site region 146645
Tssr142946 17 23681038 to 23681058 20 + TSS region transcription start site region 142946
Tssr142947 17 23681542 to 23681553 11 + TSS region transcription start site region 142947
Tssr142948 17 23681795 to 23681810 15 + TSS region transcription start site region 142948
Cldn9 17 23682584 to 23684026 1442 - protein coding gene claudin 9
Cpgi8685 17 23683025 to 23683337 312 CpG island CpG island 8685
Tssr146646 17 23684019 to 23684032 13 - TSS region transcription start site region 146646
Tssr146647 17 23684329 to 23684340 11 - TSS region transcription start site region 146647
Cpgi8686 17 23699310 to 23700515 1205 CpG island CpG island 8686
Tssr146648 17 23700142 to 23700172 30 - TSS region transcription start site region 146648
Tssr146649 17 23700181 to 23700201 20 - TSS region transcription start site region 146649
1520401A03Rik 17 23704488 to 23722783 18295 - protein coding gene RIKEN cDNA 1520401A03 gene
Tssr146650 17 23721998 to 23722009 11 - TSS region transcription start site region 146650
Cpgi8687 17 23725976 to 23727319 1343 CpG island CpG island 8687
Tssr146651 17 23726264 to 23726307 43 - TSS region transcription start site region 146651
Pkmyt1 17 23726336 to 23736735 10399 + protein coding gene protein kinase, membrane associated tyrosine/threonine 1
Tssr142949 17 23726428 to 23726474 46 + TSS region transcription start site region 142949
Tssr142950 17 23726476 to 23726493 17 + TSS region transcription start site region 142950
Tssr142951 17 23726506 to 23726514 8 + TSS region transcription start site region 142951
Paqr4 17 23736186 to 23740867 4681 - protein coding gene progestin and adipoQ receptor family member IV
Cpgi8688 17 23739352 to 23740925 1573 CpG island CpG island 8688
Tssr146652 17 23740277 to 23740298 21 - TSS region transcription start site region 146652
Tssr146653 17 23740301 to 23740359 58 - TSS region transcription start site region 146653
Tssr146654 17 23740365 to 23740385 20 - TSS region transcription start site region 146654
Tssr146655 17 23740859 to 23740888 29 - TSS region transcription start site region 146655
Kremen2 17 23741197 to 23745833 4636 - protein coding gene kringle containing transmembrane protein 2
Cpgi8689 17 23741759 to 23742990 1231 CpG island CpG island 8689
Cpgi8690 17 23744589 to 23744771 182 CpG island CpG island 8690
Tssr146656 17 23745346 to 23745363 17 - TSS region transcription start site region 146656
Cpgi8691 17 23745467 to 23745986 519 CpG island CpG island 8691
9530082P21Rik 17 23749236 to 23754065 4829 + antisense lncRNA gene RIKEN cDNA 9530082P21 gene
Tssr142952 17 23749319 to 23749353 34 + TSS region transcription start site region 142952
Tssr142953 17 23749360 to 23749384 24 + TSS region transcription start site region 142953
Flywch1 17 23752793 to 23771602 18809 - protein coding gene FLYWCH-type zinc finger 1
Tssr146657 17 23755815 to 23755869 54 - TSS region transcription start site region 146657
Gm49163 17 23765261 to 23767118 1857 + antisense lncRNA gene predicted gene, 49163
Cpgi8692 17 23771030 to 23771827 797 CpG island CpG island 8692
Tssr146658 17 23771490 to 23771499 9 - TSS region transcription start site region 146658
Tssr146659 17 23771505 to 23771537 32 - TSS region transcription start site region 146659
Tssr146660 17 23771543 to 23771595 52 - TSS region transcription start site region 146660
Tssr146661 17 23771607 to 23771636 29 - TSS region transcription start site region 146661
Gm16275 17 23771841 to 23777763 5922 + antisense lncRNA gene predicted gene 16275