Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:23175541-23655778

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp40 17 23173869 to 23193252 19383 - protein coding gene zinc finger protein 40
Tssr146611 17 23193144 to 23193173 29 - TSS region transcription start site region 146611
Tssr146612 17 23193175 to 23193208 33 - TSS region transcription start site region 146612
Tssr146613 17 23193216 to 23193258 42 - TSS region transcription start site region 146613
D17Jcs139 17 23201468 to 23201701 233 DNA segment DNA segment, Chr 17, John C. Schimenti 139
Vmn2r-ps133 17 23241668 to 23277178 35510 - pseudogene vomeronasal 2, receptor, pseudogene 133
Vmn2r114 17 23290934 to 23312313 21379 - protein coding gene vomeronasal 2, receptor 114
Vmn2r115 17 23343977 to 23360128 16151 + protein coding gene vomeronasal 2, receptor 115
Vmn2r116 17 23384803 to 23401864 17061 + protein coding gene vomeronasal 2, receptor 116
Gm49952 17 23415541 to 23415778 237 + pseudogene predicted gene, 49952
Vmn2r-ps134 17 23441014 to 23446165 5151 - pseudogene vomeronasal 2, receptor, pseudogene 134
Vmn2r117 17 23459675 to 23479597 19922 - protein coding gene vomeronasal 2, receptor 117
Olfr752-ps1 17 23491635 to 23492427 792 - pseudogene olfactory receptor 752, pseudogene 1
Gm7898 17 23515454 to 23515784 330 + pseudogene predicted gene 7898
n-TKctt13 17 23533962 to 23534034 72 + tRNA gene nuclear encoded tRNA lysine 13 (anticodon CTT)
n-TKctt12 17 23535332 to 23535404 72 - tRNA gene nuclear encoded tRNA lysine 12 (anticodon CTT)
Gm41543 17 23537670 to 23538674 1004 - lncRNA gene predicted gene, 41543
Cpgi8668 17 23537840 to 23538270 430 CpG island CpG island 8668
n-TPtgg1 17 23538766 to 23538837 71 - tRNA gene nuclear encoded tRNA proline 1 (anticodon TGG)
n-TPcgg1 17 23540915 to 23540986 71 + tRNA gene nuclear encoded tRNA proline 1 (anticodon CGG)
Cpgi8669 17 23546420 to 23547285 865 CpG island CpG island 8669
n-TPtgg6 17 23546476 to 23546547 71 - tRNA gene nuclear encoded tRNA proline 6 (anticodon TGG)
n-TKctt14 17 23547360 to 23547432 72 + tRNA gene nuclear encoded tRNA lysine 14 (anticodon CTT)
n-TRcct2 17 23548768 to 23548840 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon CCT)
Cpgi8670 17 23548841 to 23549111 270 CpG island CpG island 8670
n-TRccg2 17 23550263 to 23550335 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon CCG)
Cpgi8671 17 23550715 to 23551100 385 CpG island CpG island 8671
6330415G19Rik 17 23550799 to 23565291 14492 + antisense lncRNA gene RIKEN cDNA 6330415G19 gene
Casp16 17 23551080 to 23555330 4250 - polymorphic pseudogene caspase 16, apoptosis-related cysteine peptidase
Zfp213 17 23556767 to 23564226 7459 - protein coding gene zinc finger protein 213
Gm26695 17 23556769 to 23558313 1544 + lincRNA gene predicted gene, 26695
Cpgi8672 17 23563741 to 23564614 873 CpG island CpG island 8672
Tssr146614 17 23564117 to 23564161 44 - TSS region transcription start site region 146614
Tssr142923 17 23564269 to 23564299 30 + TSS region transcription start site region 142923
Gm49092 17 23572492 to 23573427 935 - lincRNA gene predicted gene, 49092
Zfp13 17 23575844 to 23599487 23643 - protein coding gene zinc finger protein 13
Cpgi8673 17 23575976 to 23576911 935 CpG island CpG island 8673
Cpgi8674 17 23585674 to 23586129 455 CpG island CpG island 8674
Tssr146615 17 23586214 to 23586269 55 - TSS region transcription start site region 146615
Cpgi8675 17 23592469 to 23593099 630 CpG island CpG island 8675
Tssr142924 17 23599276 to 23599332 56 + TSS region transcription start site region 142924
Cpgi8676 17 23599281 to 23599542 261 CpG island CpG island 8676
Tssr5029 17 23599484 to 23599490 6 - TSS region transcription start site region 5029
Tssr146616 17 23599538 to 23599547 9 - TSS region transcription start site region 146616
Tssr142925 17 23600805 to 23600820 15 + TSS region transcription start site region 142925
Tssr142926 17 23600832 to 23600839 7 + TSS region transcription start site region 142926
Tssr142927 17 23600844 to 23600883 39 + TSS region transcription start site region 142927
Zscan10 17 23600856 to 23611019 10163 + protein coding gene zinc finger and SCAN domain containing 10
Tssr142928 17 23600887 to 23600929 42 + TSS region transcription start site region 142928
Tssr142929 17 23601475 to 23601514 39 + TSS region transcription start site region 142929
Tssr142930 17 23604632 to 23604658 26 + TSS region transcription start site region 142930
Tssr142931 17 23604671 to 23604683 12 + TSS region transcription start site region 142931
Tssr142932 17 23604690 to 23604706 16 + TSS region transcription start site region 142932
Tssr142933 17 23604709 to 23604725 16 + TSS region transcription start site region 142933
Cpgi8677 17 23609525 to 23610917 1392 CpG island CpG island 8677
Tssr142934 17 23610467 to 23610489 22 + TSS region transcription start site region 142934
Tssr146617 17 23610639 to 23610655 16 - TSS region transcription start site region 146617
Tssr142935 17 23617303 to 23617308 5 + TSS region transcription start site region 142935
Gm7912 17 23619236 to 23620900 1664 - pseudogene predicted gene 7912
Tssr146618 17 23620431 to 23620446 15 - TSS region transcription start site region 146618
Tssr142936 17 23620763 to 23620785 22 + TSS region transcription start site region 142936
Mmp25 17 23629169 to 23645269 16100 - protein coding gene matrix metallopeptidase 25
Cpgi8678 17 23630352 to 23630526 174 CpG island CpG island 8678
Gm49935 17 23636596 to 23636739 143 + pseudogene predicted gene, 49935
Tssr146619 17 23641723 to 23641766 43 - TSS region transcription start site region 146619
Tssr142937 17 23642197 to 23642213 16 + TSS region transcription start site region 142937
Gm7773 17 23642237 to 23643144 907 + pseudogene predicted gene 7773
Cpgi8679 17 23644548 to 23645471 923 CpG island CpG island 8679
Tssr146620 17 23644953 to 23644958 5 - TSS region transcription start site region 146620
Tssr146621 17 23644979 to 23644996 17 - TSS region transcription start site region 146621
Tssr146622 17 23644999 to 23645037 38 - TSS region transcription start site region 146622
Tssr146623 17 23645047 to 23645055 8 - TSS region transcription start site region 146623
Tssr146624 17 23645066 to 23645073 7 - TSS region transcription start site region 146624
Tssr146625 17 23645232 to 23645261 29 - TSS region transcription start site region 146625
Tssr146626 17 23645264 to 23645309 45 - TSS region transcription start site region 146626