Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:22893861-27976339

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1530 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obrq13 17 11979442 to 24857795 12878353 QTL obesity resistance QTL 13
Ceat1 17 12417795 to 26182159 13764364 QTL chronic experimental autoimmune thyroiditis 1
Rtmq1 17 22681055 to 25502498 2821443 QTL renal tumor modifier QTL 1
Gm18214 17 22895714 to 22897595 1881 + pseudogene predicted gene, 18214
Vmn2r-ps128 17 22916887 to 22932941 16054 - pseudogene vomeronasal 2, receptor, pseudogene 128
Vmn2r113 17 22943184 to 22958814 15630 + protein coding gene vomeronasal 2, receptor 113
Vmn2r-ps129 17 23004971 to 23006659 1688 + pseudogene vomeronasal 2, receptor, pseudogene 129
Gm18415 17 23014387 to 23015033 646 - pseudogene predicted gene, 18415
Gm18396 17 23045498 to 23045858 360 - pseudogene predicted gene, 18396
Vmn2r-ps130 17 23076505 to 23077416 911 + pseudogene vomeronasal 2, receptor, pseudogene 130
Gm18397 17 23086099 to 23086663 564 - pseudogene predicted gene, 18397
Gm18416 17 23116958 to 23117510 552 - pseudogene predicted gene, 18416
Vmn2r-ps131 17 23147808 to 23150667 2859 + pseudogene vomeronasal 2, receptor, pseudogene 131
Gm3748 17 23161576 to 23161912 336 - pseudogene predicted gene 3748
Vmn2r-ps132 17 23167359 to 23167988 629 - pseudogene vomeronasal 2, receptor, pseudogene 132
Zfp40 17 23173869 to 23193252 19383 - protein coding gene zinc finger protein 40
Tssr146611 17 23193144 to 23193173 29 - TSS region transcription start site region 146611
Tssr146612 17 23193175 to 23193208 33 - TSS region transcription start site region 146612
Tssr146613 17 23193216 to 23193258 42 - TSS region transcription start site region 146613
D17Jcs139 17 23201468 to 23201701 233 DNA segment DNA segment, Chr 17, John C. Schimenti 139
Vmn2r-ps133 17 23241668 to 23277178 35510 - pseudogene vomeronasal 2, receptor, pseudogene 133
Vmn2r114 17 23290934 to 23312313 21379 - protein coding gene vomeronasal 2, receptor 114
Vmn2r115 17 23343977 to 23360128 16151 + protein coding gene vomeronasal 2, receptor 115
Vmn2r116 17 23384803 to 23401864 17061 + protein coding gene vomeronasal 2, receptor 116
Gm49952 17 23415541 to 23415778 237 + pseudogene predicted gene, 49952
Vmn2r-ps134 17 23441014 to 23446165 5151 - pseudogene vomeronasal 2, receptor, pseudogene 134
Vmn2r117 17 23459675 to 23479597 19922 - protein coding gene vomeronasal 2, receptor 117
Olfr752-ps1 17 23491635 to 23492427 792 - pseudogene olfactory receptor 752, pseudogene 1
Gm7898 17 23515454 to 23515784 330 + pseudogene predicted gene 7898
n-TKctt13 17 23533962 to 23534034 72 + tRNA gene nuclear encoded tRNA lysine 13 (anticodon CTT)
n-TKctt12 17 23535332 to 23535404 72 - tRNA gene nuclear encoded tRNA lysine 12 (anticodon CTT)
Gm41543 17 23537670 to 23538674 1004 - lncRNA gene predicted gene, 41543
Cpgi8668 17 23537840 to 23538270 430 CpG island CpG island 8668
n-TPtgg1 17 23538766 to 23538837 71 - tRNA gene nuclear encoded tRNA proline 1 (anticodon TGG)
n-TPcgg1 17 23540915 to 23540986 71 + tRNA gene nuclear encoded tRNA proline 1 (anticodon CGG)
Cpgi8669 17 23546420 to 23547285 865 CpG island CpG island 8669
n-TPtgg6 17 23546476 to 23546547 71 - tRNA gene nuclear encoded tRNA proline 6 (anticodon TGG)
n-TKctt14 17 23547360 to 23547432 72 + tRNA gene nuclear encoded tRNA lysine 14 (anticodon CTT)
n-TRcct2 17 23548768 to 23548840 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon CCT)
Cpgi8670 17 23548841 to 23549111 270 CpG island CpG island 8670
n-TRccg2 17 23550263 to 23550335 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon CCG)
Cpgi8671 17 23550715 to 23551100 385 CpG island CpG island 8671
6330415G19Rik 17 23550799 to 23565291 14492 + antisense lncRNA gene RIKEN cDNA 6330415G19 gene
Casp16 17 23551080 to 23555330 4250 - polymorphic pseudogene caspase 16, apoptosis-related cysteine peptidase
Zfp213 17 23556767 to 23564226 7459 - protein coding gene zinc finger protein 213
Gm26695 17 23556769 to 23558313 1544 + lincRNA gene predicted gene, 26695
Cpgi8672 17 23563741 to 23564614 873 CpG island CpG island 8672
Tssr146614 17 23564117 to 23564161 44 - TSS region transcription start site region 146614
Tssr142923 17 23564269 to 23564299 30 + TSS region transcription start site region 142923
Gm49092 17 23572492 to 23573427 935 - lincRNA gene predicted gene, 49092
Zfp13 17 23575844 to 23599487 23643 - protein coding gene zinc finger protein 13
Cpgi8673 17 23575976 to 23576911 935 CpG island CpG island 8673
Cpgi8674 17 23585674 to 23586129 455 CpG island CpG island 8674
Tssr146615 17 23586214 to 23586269 55 - TSS region transcription start site region 146615
Cpgi8675 17 23592469 to 23593099 630 CpG island CpG island 8675
Tssr142924 17 23599276 to 23599332 56 + TSS region transcription start site region 142924
Cpgi8676 17 23599281 to 23599542 261 CpG island CpG island 8676
Tssr5029 17 23599484 to 23599490 6 - TSS region transcription start site region 5029
Tssr146616 17 23599538 to 23599547 9 - TSS region transcription start site region 146616
Tssr142925 17 23600805 to 23600820 15 + TSS region transcription start site region 142925
Tssr142926 17 23600832 to 23600839 7 + TSS region transcription start site region 142926
Tssr142927 17 23600844 to 23600883 39 + TSS region transcription start site region 142927
Zscan10 17 23600856 to 23611019 10163 + protein coding gene zinc finger and SCAN domain containing 10
Tssr142928 17 23600887 to 23600929 42 + TSS region transcription start site region 142928
Tssr142929 17 23601475 to 23601514 39 + TSS region transcription start site region 142929
Tssr142930 17 23604632 to 23604658 26 + TSS region transcription start site region 142930
Tssr142931 17 23604671 to 23604683 12 + TSS region transcription start site region 142931
Tssr142932 17 23604690 to 23604706 16 + TSS region transcription start site region 142932
Tssr142933 17 23604709 to 23604725 16 + TSS region transcription start site region 142933
Cpgi8677 17 23609525 to 23610917 1392 CpG island CpG island 8677
Tssr142934 17 23610467 to 23610489 22 + TSS region transcription start site region 142934
Tssr146617 17 23610639 to 23610655 16 - TSS region transcription start site region 146617
Tssr142935 17 23617303 to 23617308 5 + TSS region transcription start site region 142935
Gm7912 17 23619236 to 23620900 1664 - pseudogene predicted gene 7912
Tssr146618 17 23620431 to 23620446 15 - TSS region transcription start site region 146618
Tssr142936 17 23620763 to 23620785 22 + TSS region transcription start site region 142936
Mmp25 17 23629169 to 23645269 16100 - protein coding gene matrix metallopeptidase 25
Cpgi8678 17 23630352 to 23630526 174 CpG island CpG island 8678
Gm49935 17 23636596 to 23636739 143 + pseudogene predicted gene, 49935
Tssr146619 17 23641723 to 23641766 43 - TSS region transcription start site region 146619
Tssr142937 17 23642197 to 23642213 16 + TSS region transcription start site region 142937
Gm7773 17 23642237 to 23643144 907 + pseudogene predicted gene 7773
Cpgi8679 17 23644548 to 23645471 923 CpG island CpG island 8679
Tssr146620 17 23644953 to 23644958 5 - TSS region transcription start site region 146620
Tssr146621 17 23644979 to 23644996 17 - TSS region transcription start site region 146621
Tssr146622 17 23644999 to 23645037 38 - TSS region transcription start site region 146622
Tssr146623 17 23645047 to 23645055 8 - TSS region transcription start site region 146623
Tssr146624 17 23645066 to 23645073 7 - TSS region transcription start site region 146624
Tssr146625 17 23645232 to 23645261 29 - TSS region transcription start site region 146625
Tssr146626 17 23645264 to 23645309 45 - TSS region transcription start site region 146626
Cpgi8680 17 23660406 to 23661086 680 CpG island CpG island 8680
Tssr142938 17 23660477 to 23660525 48 + TSS region transcription start site region 142938
Bicdl2 17 23660506 to 23668621 8115 + protein coding gene BICD family like cargo adaptor 2
Tssr142939 17 23665010 to 23665016 6 + TSS region transcription start site region 142939
Cpgi8681 17 23665370 to 23665567 197 CpG island CpG island 8681
Thoc6 17 23668614 to 23673882 5268 - protein coding gene THO complex 6
Tssr146627 17 23669921 to 23669938 17 - TSS region transcription start site region 146627
Tssr146628 17 23669946 to 23669967 21 - TSS region transcription start site region 146628
Tssr146629 17 23669969 to 23670004 35 - TSS region transcription start site region 146629
Tssr5030 17 23670009 to 23670010 1 - TSS region transcription start site region 5030
Tssr146630 17 23670785 to 23670792 7 - TSS region transcription start site region 146630
Tssr146631 17 23670863 to 23670873 10 - TSS region transcription start site region 146631
Tssr146632 17 23670890 to 23670913 23 - TSS region transcription start site region 146632
Tssr146633 17 23670924 to 23670941 17 - TSS region transcription start site region 146633
Tssr146634 17 23670943 to 23670944 1 - TSS region transcription start site region 146634
Cpgi8682 17 23673381 to 23674113 732 CpG island CpG island 8682
Tssr146635 17 23673557 to 23673577 20 - TSS region transcription start site region 146635
Tssr142940 17 23673581 to 23673652 71 + TSS region transcription start site region 142940
Hcfc1r1 17 23673596 to 23675227 1631 + protein coding gene host cell factor C1 regulator 1 (XPO1-dependent)
Tssr146636 17 23673825 to 23673887 62 - TSS region transcription start site region 146636
Tssr142941 17 23673898 to 23673987 89 + TSS region transcription start site region 142941
Tssr142942 17 23673990 to 23674001 11 + TSS region transcription start site region 142942
Pbft7 17 23674962 to 23674962 0 QTL percent body fat 7
Tssr146637 17 23675059 to 23675104 45 - TSS region transcription start site region 146637
Tnfrsf12a 17 23675445 to 23677449 2004 - protein coding gene tumor necrosis factor receptor superfamily, member 12a
Tssr146638 17 23675851 to 23675888 37 - TSS region transcription start site region 146638
Cpgi8683 17 23676440 to 23677628 1188 CpG island CpG island 8683
Tssr146639 17 23676562 to 23676583 21 - TSS region transcription start site region 146639
Tssr146640 17 23676587 to 23676629 42 - TSS region transcription start site region 146640
Tssr146641 17 23676641 to 23676646 5 - TSS region transcription start site region 146641
Tssr146642 17 23676660 to 23676684 24 - TSS region transcription start site region 146642
Tssr146643 17 23677432 to 23677456 24 - TSS region transcription start site region 146643
Tssr146644 17 23677477 to 23677484 7 - TSS region transcription start site region 146644
Cpgi8684 17 23679292 to 23679881 589 CpG island CpG island 8684
Cldn6 17 23679348 to 23682446 3098 + protein coding gene claudin 6
Tssr142943 17 23679363 to 23679377 14 + TSS region transcription start site region 142943
Tssr142944 17 23679672 to 23679736 64 + TSS region transcription start site region 142944
Tssr142945 17 23679737 to 23679755 18 + TSS region transcription start site region 142945
Tssr146645 17 23680430 to 23680442 12 - TSS region transcription start site region 146645
Tssr142946 17 23681038 to 23681058 20 + TSS region transcription start site region 142946
Tssr142947 17 23681542 to 23681553 11 + TSS region transcription start site region 142947
Tssr142948 17 23681795 to 23681810 15 + TSS region transcription start site region 142948
Cldn9 17 23682584 to 23684026 1442 - protein coding gene claudin 9
Cpgi8685 17 23683025 to 23683337 312 CpG island CpG island 8685
Tssr146646 17 23684019 to 23684032 13 - TSS region transcription start site region 146646
Tssr146647 17 23684329 to 23684340 11 - TSS region transcription start site region 146647
Cpgi8686 17 23699310 to 23700515 1205 CpG island CpG island 8686
Tssr146648 17 23700142 to 23700172 30 - TSS region transcription start site region 146648
Tssr146649 17 23700181 to 23700201 20 - TSS region transcription start site region 146649
1520401A03Rik 17 23704488 to 23722783 18295 - protein coding gene RIKEN cDNA 1520401A03 gene
Tssr146650 17 23721998 to 23722009 11 - TSS region transcription start site region 146650
Cpgi8687 17 23725976 to 23727319 1343 CpG island CpG island 8687
Tssr146651 17 23726264 to 23726307 43 - TSS region transcription start site region 146651
Pkmyt1 17 23726336 to 23736735 10399 + protein coding gene protein kinase, membrane associated tyrosine/threonine 1
Tssr142949 17 23726428 to 23726474 46 + TSS region transcription start site region 142949
Tssr142950 17 23726476 to 23726493 17 + TSS region transcription start site region 142950
Tssr142951 17 23726506 to 23726514 8 + TSS region transcription start site region 142951
Paqr4 17 23736186 to 23740867 4681 - protein coding gene progestin and adipoQ receptor family member IV
Cpgi8688 17 23739352 to 23740925 1573 CpG island CpG island 8688
Tssr146652 17 23740277 to 23740298 21 - TSS region transcription start site region 146652
Tssr146653 17 23740301 to 23740359 58 - TSS region transcription start site region 146653
Tssr146654 17 23740365 to 23740385 20 - TSS region transcription start site region 146654
Tssr146655 17 23740859 to 23740888 29 - TSS region transcription start site region 146655
Kremen2 17 23741197 to 23745833 4636 - protein coding gene kringle containing transmembrane protein 2
Cpgi8689 17 23741759 to 23742990 1231 CpG island CpG island 8689
Cpgi8690 17 23744589 to 23744771 182 CpG island CpG island 8690
Tssr146656 17 23745346 to 23745363 17 - TSS region transcription start site region 146656
Cpgi8691 17 23745467 to 23745986 519 CpG island CpG island 8691
9530082P21Rik 17 23749236 to 23754065 4829 + antisense lncRNA gene RIKEN cDNA 9530082P21 gene
Tssr142952 17 23749319 to 23749353 34 + TSS region transcription start site region 142952
Tssr142953 17 23749360 to 23749384 24 + TSS region transcription start site region 142953
Flywch1 17 23752793 to 23771602 18809 - protein coding gene FLYWCH-type zinc finger 1
Tssr146657 17 23755815 to 23755869 54 - TSS region transcription start site region 146657
Gm49163 17 23765261 to 23767118 1857 + antisense lncRNA gene predicted gene, 49163
Cpgi8692 17 23771030 to 23771827 797 CpG island CpG island 8692
Tssr146658 17 23771490 to 23771499 9 - TSS region transcription start site region 146658
Tssr146659 17 23771505 to 23771537 32 - TSS region transcription start site region 146659
Tssr146660 17 23771543 to 23771595 52 - TSS region transcription start site region 146660
Tssr146661 17 23771607 to 23771636 29 - TSS region transcription start site region 146661
Gm16275 17 23771841 to 23777763 5922 + antisense lncRNA gene predicted gene 16275
Flywch2 17 23776916 to 23786081 9165 - protein coding gene FLYWCH family member 2
Tssr146662 17 23777245 to 23777256 11 - TSS region transcription start site region 146662
Cpgi8693 17 23785771 to 23786320 549 CpG island CpG island 8693
Tssr146663 17 23786046 to 23786083 37 - TSS region transcription start site region 146663
Tssr146664 17 23786091 to 23786122 31 - TSS region transcription start site region 146664
Tssr146665 17 23786197 to 23786237 40 - TSS region transcription start site region 146665
Tssr146666 17 23789880 to 23789913 33 - TSS region transcription start site region 146666
Cpgi8694 17 23790451 to 23790814 363 CpG island CpG island 8694
Tssr142954 17 23790625 to 23790670 45 + TSS region transcription start site region 142954
Srrm2 17 23790857 to 23824741 33884 + protein coding gene serine/arginine repetitive matrix 2
Cpgi8695 17 23802608 to 23804068 1460 CpG island CpG island 8695
Tssr146667 17 23802820 to 23802852 32 - TSS region transcription start site region 146667
Tssr142955 17 23803179 to 23803237 58 + TSS region transcription start site region 142955
Tssr142956 17 23803615 to 23803684 69 + TSS region transcription start site region 142956
Tssr146668 17 23804014 to 23804027 13 - TSS region transcription start site region 146668
Tssr142957 17 23806519 to 23806531 12 + TSS region transcription start site region 142957
Cpgi8696 17 23806857 to 23807245 388 CpG island CpG island 8696
Tssr142958 17 23807068 to 23807122 54 + TSS region transcription start site region 142958
Tssr142959 17 23807131 to 23807167 36 + TSS region transcription start site region 142959
Tssr142960 17 23808060 to 23808073 13 + TSS region transcription start site region 142960
Tssr142961 17 23808136 to 23808147 11 + TSS region transcription start site region 142961
Tssr146669 17 23810006 to 23810053 47 - TSS region transcription start site region 146669
Tssr142962 17 23812364 to 23812378 14 + TSS region transcription start site region 142962
Tssr142963 17 23812500 to 23812522 22 + TSS region transcription start site region 142963
Gm49911 17 23813214 to 23813500 286 - pseudogene predicted gene, 49911
Tssr142964 17 23813419 to 23813466 47 + TSS region transcription start site region 142964
Tssr142965 17 23815116 to 23815191 75 + TSS region transcription start site region 142965
Tssr142966 17 23815196 to 23815238 42 + TSS region transcription start site region 142966
Tssr146670 17 23815241 to 23815270 29 - TSS region transcription start site region 146670
Tssr142967 17 23815272 to 23815284 12 + TSS region transcription start site region 142967