Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:22520498-23570858

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30818 17 22497390 to 22521967 24577 + lncRNA gene predicted gene, 30818
Vmn2r111 17 22547941 to 22573273 25332 - protein coding gene vomeronasal 2, receptor 111
Vmn2r112 17 22601148 to 22619133 17985 + protein coding gene vomeronasal 2, receptor 112
D17Jcs137 17 22629350 to 22629564 214 DNA segment DNA segment, Chr 17, John C. Schimenti 137
Tssr142914 17 22674308 to 22674328 20 + TSS region transcription start site region 142914
Tssr142915 17 22674332 to 22674342 10 + TSS region transcription start site region 142915
Tssr142916 17 22674344 to 22674379 35 + TSS region transcription start site region 142916
Tssr142917 17 22674381 to 22674388 7 + TSS region transcription start site region 142917
Tssr142918 17 22674390 to 22674423 33 + TSS region transcription start site region 142918
Rtmq1 17 22681055 to 25502498 2821443 QTL renal tumor modifier QTL 1
Gm9805 17 22687720 to 22690460 2740 + pseudogene predicted gene 9805
Gm20008 17 22713866 to 22716937 3071 - pseudogene predicted gene, 20008
Tssr142919 17 22734826 to 22734858 32 + TSS region transcription start site region 142919
Gm5224 17 22734963 to 22735380 417 + pseudogene predicted pseudogene 5224
Cpgi8667 17 22739599 to 22739943 344 CpG island CpG island 8667
Tssr146606 17 22739892 to 22739937 45 - TSS region transcription start site region 146606
Gm5493 17 22739945 to 22751509 11564 + lincRNA gene predicted gene 5493
Gm16386 17 22776230 to 22817747 41517 - lincRNA gene predicted gene 16386
D17Jcs138 17 22842970 to 22843213 243 DNA segment DNA segment, Chr 17, John C. Schimenti 138
Zfp945 17 22846697 to 22867134 20437 - protein coding gene zinc finger protein 945
Tssr146607 17 22864161 to 22864164 3 - TSS region transcription start site region 146607
Tssr146608 17 22867075 to 22867110 35 - TSS region transcription start site region 146608
Tssr146609 17 22867118 to 22867141 23 - TSS region transcription start site region 146609
Tssr146610 17 22867158 to 22867190 32 - TSS region transcription start site region 146610
Gm32892 17 22873486 to 22874001 515 + pseudogene predicted gene, 32892
Tssr142920 17 22876348 to 22876367 19 + TSS region transcription start site region 142920
Tssr142921 17 22876454 to 22876478 24 + TSS region transcription start site region 142921
Tssr142922 17 22878120 to 22878132 12 + TSS region transcription start site region 142922
Gm18214 17 22895714 to 22897595 1881 + pseudogene predicted gene, 18214
Vmn2r-ps128 17 22916887 to 22932941 16054 - pseudogene vomeronasal 2, receptor, pseudogene 128
Vmn2r113 17 22943184 to 22958814 15630 + protein coding gene vomeronasal 2, receptor 113
Vmn2r-ps129 17 23004971 to 23006659 1688 + pseudogene vomeronasal 2, receptor, pseudogene 129
Gm18415 17 23014387 to 23015033 646 - pseudogene predicted gene, 18415
Gm18396 17 23045498 to 23045858 360 - pseudogene predicted gene, 18396
Vmn2r-ps130 17 23076505 to 23077416 911 + pseudogene vomeronasal 2, receptor, pseudogene 130
Gm18397 17 23086099 to 23086663 564 - pseudogene predicted gene, 18397
Gm18416 17 23116958 to 23117510 552 - pseudogene predicted gene, 18416
Vmn2r-ps131 17 23147808 to 23150667 2859 + pseudogene vomeronasal 2, receptor, pseudogene 131
Gm3748 17 23161576 to 23161912 336 - pseudogene predicted gene 3748
Vmn2r-ps132 17 23167359 to 23167988 629 - pseudogene vomeronasal 2, receptor, pseudogene 132
Zfp40 17 23173869 to 23193252 19383 - protein coding gene zinc finger protein 40
Tssr146611 17 23193144 to 23193173 29 - TSS region transcription start site region 146611
Tssr146612 17 23193175 to 23193208 33 - TSS region transcription start site region 146612
Tssr146613 17 23193216 to 23193258 42 - TSS region transcription start site region 146613
D17Jcs139 17 23201468 to 23201701 233 DNA segment DNA segment, Chr 17, John C. Schimenti 139
Vmn2r-ps133 17 23241668 to 23277178 35510 - pseudogene vomeronasal 2, receptor, pseudogene 133
Vmn2r114 17 23290934 to 23312313 21379 - protein coding gene vomeronasal 2, receptor 114
Vmn2r115 17 23343977 to 23360128 16151 + protein coding gene vomeronasal 2, receptor 115
Vmn2r116 17 23384803 to 23401864 17061 + protein coding gene vomeronasal 2, receptor 116
Gm49952 17 23415541 to 23415778 237 + pseudogene predicted gene, 49952
Vmn2r-ps134 17 23441014 to 23446165 5151 - pseudogene vomeronasal 2, receptor, pseudogene 134
Vmn2r117 17 23459675 to 23479597 19922 - protein coding gene vomeronasal 2, receptor 117
Olfr752-ps1 17 23491635 to 23492427 792 - pseudogene olfactory receptor 752, pseudogene 1
Gm7898 17 23515454 to 23515784 330 + pseudogene predicted gene 7898
n-TKctt13 17 23533962 to 23534034 72 + tRNA gene nuclear encoded tRNA lysine 13 (anticodon CTT)
n-TKctt12 17 23535332 to 23535404 72 - tRNA gene nuclear encoded tRNA lysine 12 (anticodon CTT)
Gm41543 17 23537670 to 23538674 1004 - lncRNA gene predicted gene, 41543
Cpgi8668 17 23537840 to 23538270 430 CpG island CpG island 8668
n-TPtgg1 17 23538766 to 23538837 71 - tRNA gene nuclear encoded tRNA proline 1 (anticodon TGG)
n-TPcgg1 17 23540915 to 23540986 71 + tRNA gene nuclear encoded tRNA proline 1 (anticodon CGG)
Cpgi8669 17 23546420 to 23547285 865 CpG island CpG island 8669
n-TPtgg6 17 23546476 to 23546547 71 - tRNA gene nuclear encoded tRNA proline 6 (anticodon TGG)
n-TKctt14 17 23547360 to 23547432 72 + tRNA gene nuclear encoded tRNA lysine 14 (anticodon CTT)
n-TRcct2 17 23548768 to 23548840 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon CCT)
Cpgi8670 17 23548841 to 23549111 270 CpG island CpG island 8670
n-TRccg2 17 23550263 to 23550335 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon CCG)
Cpgi8671 17 23550715 to 23551100 385 CpG island CpG island 8671
6330415G19Rik 17 23550799 to 23565291 14492 + antisense lncRNA gene RIKEN cDNA 6330415G19 gene
Casp16 17 23551080 to 23555330 4250 - polymorphic pseudogene caspase 16, apoptosis-related cysteine peptidase
Zfp213 17 23556767 to 23564226 7459 - protein coding gene zinc finger protein 213
Gm26695 17 23556769 to 23558313 1544 + lincRNA gene predicted gene, 26695
Cpgi8672 17 23563741 to 23564614 873 CpG island CpG island 8672
Tssr146614 17 23564117 to 23564161 44 - TSS region transcription start site region 146614
Tssr142923 17 23564269 to 23564299 30 + TSS region transcription start site region 142923