Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:21562989-23136400

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8658 17 21566930 to 21567292 362 CpG island CpG island 8658
Tssr142892 17 21566988 to 21567043 55 + TSS region transcription start site region 142892
Zfp948 17 21567008 to 21588699 21691 + protein coding gene zinc finger protein 948
Tssr142893 17 21567056 to 21567067 11 + TSS region transcription start site region 142893
Tssr142894 17 21567419 to 21567424 5 + TSS region transcription start site region 142894
Tssr142895 17 21573839 to 21573843 4 + TSS region transcription start site region 142895
Gm49954 17 21613612 to 21613822 210 + pseudogene predicted gene, 49954
Gm41541 17 21619792 to 21624989 5197 - lincRNA gene predicted gene, 41541
Gm30531 17 21629252 to 21635227 5975 + pseudogene predicted gene, 30531
Tssr146593 17 21650436 to 21650468 32 - TSS region transcription start site region 146593
Cpgi8659 17 21650522 to 21650823 301 CpG island CpG island 8659
Zfp983 17 21650624 to 21664966 14342 + protein coding gene zinc finger protein 983
D17Jcs131 17 21658367 to 21658531 164 DNA segment DNA segment, Chr 17, John C. Schimenti 131
Gm10509 17 21690180 to 21691022 842 + pseudogene predicted gene 10509
Gm10226 17 21691860 to 21692114 254 + protein coding gene predicted gene 10226
Cpgi8660 17 21707609 to 21707953 344 CpG island CpG island 8660
Tssr142896 17 21707682 to 21707741 59 + TSS region transcription start site region 142896
Zfp760 17 21707741 to 21725636 17895 + protein coding gene zinc finger protein 760
Tssr142897 17 21707742 to 21707765 23 + TSS region transcription start site region 142897
Tssr142898 17 21707770 to 21707799 29 + TSS region transcription start site region 142898
Tssr142899 17 21733704 to 21733722 18 + TSS region transcription start site region 142899
Zfp229 17 21733724 to 21748969 15245 + protein coding gene zinc finger protein 229
Tssr142900 17 21733727 to 21733749 22 + TSS region transcription start site region 142900
Cpgi8661 17 21733839 to 21734052 213 CpG island CpG island 8661
D17Jcs132 17 21782377 to 21782625 248 DNA segment DNA segment, Chr 17, John C. Schimenti 132
Gm18270 17 21787895 to 21789331 1436 + pseudogene predicted gene, 18270
4930515G13Rik 17 21801159 to 21801658 499 - pseudogene RIKEN cDNA 4930515G13 gene
Gm9818 17 21808186 to 21808444 258 + pseudogene predicted gene 9818
Zfp820 17 21816876 to 21845759 28883 - protein coding gene zinc finger protein 820
Gm31758 17 21823906 to 21865293 41387 + lncRNA gene predicted gene, 31758
Cpgi8662 17 21845599 to 21845766 167 CpG island CpG island 8662
Zfp995 17 21879570 to 21909926 30356 - protein coding gene zinc finger protein 995
Cpgi8663 17 21909492 to 21909658 166 CpG island CpG island 8663
Tssr146594 17 21909619 to 21909677 58 - TSS region transcription start site region 146594
Gm6540 17 21920204 to 21921172 968 - pseudogene predicted gene 6540
Cpgi8664 17 21920987 to 21921277 290 CpG island CpG island 8664
Tssr146595 17 21921295 to 21921296 1 - TSS region transcription start site region 146595
Zfp942 17 21926963 to 21962464 35501 - protein coding gene zinc finger protein 942
D17Jcs133 17 21958711 to 21958957 246 DNA segment DNA segment, Chr 17, John C. Schimenti 133
Zfp943 17 21962559 to 21994366 31807 + protein coding gene zinc finger prtoein 943
Cpgi8665 17 21962715 to 21962959 244 CpG island CpG island 8665
Tssr142901 17 21962730 to 21962752 22 + TSS region transcription start site region 142901
Tssr142902 17 21963589 to 21963596 7 + TSS region transcription start site region 142902
Gm7805 17 21964136 to 21964583 447 - pseudogene predicted gene 7805
Gm7809 17 21967501 to 21968242 741 - pseudogene predicted gene 7809
Tssr146596 17 21967789 to 21967808 19 - TSS region transcription start site region 146596
Gm49950 17 21968487 to 21968794 307 - pseudogene predicted gene, 49950
Tssr142903 17 21976397 to 21976405 8 + TSS region transcription start site region 142903
Gm9772 17 22006193 to 22007676 1483 - pseudogene predicted gene 9772
Gm9620 17 22014975 to 22018583 3608 + pseudogene predicted gene 9620
Gm7052 17 22039028 to 22040539 1511 - pseudogene predicted gene 7052
Gm7818 17 22067688 to 22068921 1233 - pseudogene predicted gene 7818
Cpgi8666 17 22080990 to 22081596 606 CpG island CpG island 8666
Tssr142904 17 22080998 to 22081001 3 + TSS region transcription start site region 142904
Tssr146597 17 22081178 to 22081210 32 - TSS region transcription start site region 146597
Tssr142905 17 22081225 to 22081252 27 + TSS region transcription start site region 142905
Tssr146598 17 22081291 to 22081307 16 - TSS region transcription start site region 146598
Tssr146599 17 22081315 to 22081336 21 - TSS region transcription start site region 146599
Zfp947 17 22144359 to 22165977 21618 - protein coding gene zinc finger protein 947
Gm9514 17 22184767 to 22186108 1341 - pseudogene predicted gene 9514
Zfp994 17 22197265 to 22225614 28349 - protein coding gene zinc finger protein 994
Tssr146600 17 22219477 to 22219481 4 - TSS region transcription start site region 146600
Tssr146601 17 22225616 to 22225639 23 - TSS region transcription start site region 146601
Gm7072 17 22285871 to 22314837 28966 - unclassified gene predicted gene 7072
Tssr146602 17 22314794 to 22314809 15 - TSS region transcription start site region 146602
Tssr146603 17 22314814 to 22314846 32 - TSS region transcription start site region 146603
Gm49951 17 22331856 to 22332994 1138 - pseudogene predicted gene, 49951
Zfp944 17 22337989 to 22361400 23411 - protein coding gene zinc finger protein 944
Tssr146604 17 22347905 to 22347912 7 - TSS region transcription start site region 146604
D17Jcs135 17 22351397 to 22351646 249 DNA segment DNA segment, Chr 17, John C. Schimenti 135
Zfp758 17 22361453 to 22377281 15828 + protein coding gene zinc finger protein 758
Tssr142906 17 22424215 to 22424241 26 + TSS region transcription start site region 142906
Zfp946 17 22424222 to 22456689 32467 + protein coding gene zinc finger protein 946
Tssr142907 17 22424248 to 22424260 12 + TSS region transcription start site region 142907
Tssr142908 17 22424261 to 22424276 15 + TSS region transcription start site region 142908
Tssr142909 17 22429258 to 22429263 5 + TSS region transcription start site region 142909
D17Jcs136 17 22449687 to 22449932 245 DNA segment DNA segment, Chr 17, John C. Schimenti 136
Gm49955 17 22486227 to 22486376 149 - pseudogene predicted gene, 49955
Gm49956 17 22486555 to 22486750 195 + pseudogene predicted gene, 49956
Gm19012 17 22494622 to 22495562 940 + pseudogene predicted gene, 19012
Tssr142910 17 22497378 to 22497385 7 + TSS region transcription start site region 142910
Gm30818 17 22497390 to 22521967 24577 + lncRNA gene predicted gene, 30818
Tssr142911 17 22497395 to 22497405 10 + TSS region transcription start site region 142911
Tssr142912 17 22497440 to 22497460 20 + TSS region transcription start site region 142912
Tssr142913 17 22501524 to 22501527 3 + TSS region transcription start site region 142913
Tssr146605 17 22519380 to 22519382 2 - TSS region transcription start site region 146605
Vmn2r111 17 22547941 to 22573273 25332 - protein coding gene vomeronasal 2, receptor 111
Vmn2r112 17 22601148 to 22619133 17985 + protein coding gene vomeronasal 2, receptor 112
D17Jcs137 17 22629350 to 22629564 214 DNA segment DNA segment, Chr 17, John C. Schimenti 137
Tssr142914 17 22674308 to 22674328 20 + TSS region transcription start site region 142914
Tssr142915 17 22674332 to 22674342 10 + TSS region transcription start site region 142915
Tssr142916 17 22674344 to 22674379 35 + TSS region transcription start site region 142916
Tssr142917 17 22674381 to 22674388 7 + TSS region transcription start site region 142917
Tssr142918 17 22674390 to 22674423 33 + TSS region transcription start site region 142918
Rtmq1 17 22681055 to 25502498 2821443 QTL renal tumor modifier QTL 1
Gm9805 17 22687720 to 22690460 2740 + pseudogene predicted gene 9805
Gm20008 17 22713866 to 22716937 3071 - pseudogene predicted gene, 20008
Tssr142919 17 22734826 to 22734858 32 + TSS region transcription start site region 142919
Gm5224 17 22734963 to 22735380 417 + pseudogene predicted pseudogene 5224
Cpgi8667 17 22739599 to 22739943 344 CpG island CpG island 8667
Tssr146606 17 22739892 to 22739937 45 - TSS region transcription start site region 146606
Gm5493 17 22739945 to 22751509 11564 + lincRNA gene predicted gene 5493
Gm16386 17 22776230 to 22817747 41517 - lincRNA gene predicted gene 16386
D17Jcs138 17 22842970 to 22843213 243 DNA segment DNA segment, Chr 17, John C. Schimenti 138
Zfp945 17 22846697 to 22867134 20437 - protein coding gene zinc finger protein 945
Tssr146607 17 22864161 to 22864164 3 - TSS region transcription start site region 146607
Tssr146608 17 22867075 to 22867110 35 - TSS region transcription start site region 146608
Tssr146609 17 22867118 to 22867141 23 - TSS region transcription start site region 146609
Tssr146610 17 22867158 to 22867190 32 - TSS region transcription start site region 146610
Gm32892 17 22873486 to 22874001 515 + pseudogene predicted gene, 32892
Tssr142920 17 22876348 to 22876367 19 + TSS region transcription start site region 142920
Tssr142921 17 22876454 to 22876478 24 + TSS region transcription start site region 142921
Tssr142922 17 22878120 to 22878132 12 + TSS region transcription start site region 142922
Gm18214 17 22895714 to 22897595 1881 + pseudogene predicted gene, 18214
Vmn2r-ps128 17 22916887 to 22932941 16054 - pseudogene vomeronasal 2, receptor, pseudogene 128
Vmn2r113 17 22943184 to 22958814 15630 + protein coding gene vomeronasal 2, receptor 113
Vmn2r-ps129 17 23004971 to 23006659 1688 + pseudogene vomeronasal 2, receptor, pseudogene 129
Gm18415 17 23014387 to 23015033 646 - pseudogene predicted gene, 18415
Gm18396 17 23045498 to 23045858 360 - pseudogene predicted gene, 18396
Vmn2r-ps130 17 23076505 to 23077416 911 + pseudogene vomeronasal 2, receptor, pseudogene 130
Gm18397 17 23086099 to 23086663 564 - pseudogene predicted gene, 18397
Gm18416 17 23116958 to 23117510 552 - pseudogene predicted gene, 18416