Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:21219077-21759088

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn1r-ps147 17 21225478 to 21225990 512 - pseudogene vomeronasal 1 receptor, pseudogene 147
Vmn1r234 17 21228826 to 21229815 989 + protein coding gene vomeronasal 1 receptor 234
Vmn1r-ps148 17 21244841 to 21245295 454 + pseudogene vomeronasal 1 receptor, pseudogene 148
Vmn1r235 17 21260427 to 21262863 2436 + protein coding gene vomeronasal 1 receptor 235
Vmn1r-ps149 17 21269288 to 21269470 182 - pseudogene vomeronasal 1 receptor, pseudogene 149
Gm26384 17 21284103 to 21284212 109 - miRNA gene predicted gene, 26384
Vmn1r236 17 21286533 to 21287653 1120 + protein coding gene vomeronasal 1 receptor 236
Vmn1r237 17 21314017 to 21314886 869 + protein coding gene vomeronasal 1 receptor 237
Vmn1r-ps150 17 21323031 to 21323764 733 - pseudogene vomeronasal 1 receptor, pseudogene 150
Cpgi8652 17 21370049 to 21370488 439 CpG island CpG island 8652
Gm18269 17 21374638 to 21376348 1710 + pseudogene predicted gene, 18269
Cpgi8653 17 21383639 to 21383886 247 CpG island CpG island 8653
Tssr142873 17 21383725 to 21383766 41 + TSS region transcription start site region 142873
Zfp677 17 21383748 to 21399265 15517 + protein coding gene zinc finger protein 677
Gm18519 17 21394078 to 21395117 1039 - pseudogene predicted gene, 18519
Gm49691 17 21422649 to 21450267 27618 - antisense lncRNA gene predicted gene, 49691
Zfp54 17 21423227 to 21435384 12157 + protein coding gene zinc finger protein 54
Tssr5027 17 21423232 to 21423264 32 + TSS region transcription start site region 5027
Tssr142874 17 21423486 to 21423516 30 + TSS region transcription start site region 142874
D17Jcs130 17 21428496 to 21428680 184 DNA segment DNA segment, Chr 17, John C. Schimenti 130
Tssr146589 17 21450256 to 21450273 17 - TSS region transcription start site region 146589
Cpgi8654 17 21450256 to 21450693 437 CpG island CpG island 8654
Tssr142875 17 21450361 to 21450397 36 + TSS region transcription start site region 142875
Zfp51 17 21450374 to 21465587 15213 + protein coding gene zinc finger protein 51
Tssr142876 17 21450436 to 21450447 11 + TSS region transcription start site region 142876
Tssr146590 17 21463452 to 21463457 5 - TSS region transcription start site region 146590
Tssr146591 17 21471606 to 21471609 3 - TSS region transcription start site region 146591
Tssr142877 17 21473843 to 21473866 23 + TSS region transcription start site region 142877
Tssr142878 17 21474249 to 21474273 24 + TSS region transcription start site region 142878
Tssr142879 17 21474907 to 21474922 15 + TSS region transcription start site region 142879
Gm26753 17 21485177 to 21488875 3698 - lincRNA gene predicted gene, 26753
Cpgi8655 17 21488750 to 21489381 631 CpG island CpG island 8655
Tssr142880 17 21488982 to 21489060 78 + TSS region transcription start site region 142880
Zfp53 17 21488998 to 21510473 21475 + protein coding gene zinc finger protein 53
Tssr142881 17 21489077 to 21489088 11 + TSS region transcription start site region 142881
Tssr142882 17 21489091 to 21489117 26 + TSS region transcription start site region 142882
Tssr142883 17 21489200 to 21489222 22 + TSS region transcription start site region 142883
Tssr142884 17 21503815 to 21503818 3 + TSS region transcription start site region 142884
Cpgi8656 17 21516603 to 21516978 375 CpG island CpG island 8656
Tssr146592 17 21516939 to 21516960 21 - TSS region transcription start site region 146592
Tssr142885 17 21516998 to 21517018 20 + TSS region transcription start site region 142885
9330136K24Rik 17 21528196 to 21535878 7682 - lincRNA gene RIKEN cDNA 9330136K24 gene
Cpgi8657 17 21532232 to 21532892 660 CpG island CpG island 8657
Tssr5028 17 21535450 to 21535511 61 - TSS region transcription start site region 5028
Tssr142886 17 21535530 to 21535545 15 + TSS region transcription start site region 142886
Zfp52 17 21535539 to 21562601 27062 + protein coding gene zinc finger protein 52
Tssr142887 17 21535547 to 21535571 24 + TSS region transcription start site region 142887
Tssr142888 17 21535572 to 21535589 17 + TSS region transcription start site region 142888
Tssr142889 17 21535593 to 21535628 35 + TSS region transcription start site region 142889
Tssr142890 17 21535634 to 21535661 27 + TSS region transcription start site region 142890
Tssr142891 17 21537082 to 21537095 13 + TSS region transcription start site region 142891
Cpgi8658 17 21566930 to 21567292 362 CpG island CpG island 8658
Tssr142892 17 21566988 to 21567043 55 + TSS region transcription start site region 142892
Zfp948 17 21567008 to 21588699 21691 + protein coding gene zinc finger protein 948
Tssr142893 17 21567056 to 21567067 11 + TSS region transcription start site region 142893
Tssr142894 17 21567419 to 21567424 5 + TSS region transcription start site region 142894
Tssr142895 17 21573839 to 21573843 4 + TSS region transcription start site region 142895
Gm49954 17 21613612 to 21613822 210 + pseudogene predicted gene, 49954
Gm41541 17 21619792 to 21624989 5197 - lincRNA gene predicted gene, 41541
Gm30531 17 21629252 to 21635227 5975 + pseudogene predicted gene, 30531
Tssr146593 17 21650436 to 21650468 32 - TSS region transcription start site region 146593
Cpgi8659 17 21650522 to 21650823 301 CpG island CpG island 8659
Zfp983 17 21650624 to 21664966 14342 + protein coding gene zinc finger protein 983
D17Jcs131 17 21658367 to 21658531 164 DNA segment DNA segment, Chr 17, John C. Schimenti 131
Gm10509 17 21690180 to 21691022 842 + pseudogene predicted gene 10509
Gm10226 17 21691860 to 21692114 254 + protein coding gene predicted gene 10226
Cpgi8660 17 21707609 to 21707953 344 CpG island CpG island 8660
Tssr142896 17 21707682 to 21707741 59 + TSS region transcription start site region 142896
Zfp760 17 21707741 to 21725636 17895 + protein coding gene zinc finger protein 760
Tssr142897 17 21707742 to 21707765 23 + TSS region transcription start site region 142897
Tssr142898 17 21707770 to 21707799 29 + TSS region transcription start site region 142898
Tssr142899 17 21733704 to 21733722 18 + TSS region transcription start site region 142899
Zfp229 17 21733724 to 21748969 15245 + protein coding gene zinc finger protein 229
Tssr142900 17 21733727 to 21733749 22 + TSS region transcription start site region 142900
Cpgi8661 17 21733839 to 21734052 213 CpG island CpG island 8661