Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:20938452-21988457

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49761 17 20892028 to 20945149 53121 - lincRNA gene predicted gene, 49761
Cpgi8650 17 20944978 to 20946226 1248 CpG island CpG island 8650
Tssr146588 17 20945062 to 20945128 66 - TSS region transcription start site region 146588
Tssr142863 17 20945333 to 20945355 22 + TSS region transcription start site region 142863
Tssr142864 17 20945407 to 20945508 101 + TSS region transcription start site region 142864
Ppp2r1a 17 20945454 to 20965905 20451 + protein coding gene protein phosphatase 2, regulatory subunit A, alpha
Tssr5026 17 20955633 to 20955637 4 + TSS region transcription start site region 5026
Tssr142865 17 20955953 to 20955982 29 + TSS region transcription start site region 142865
Tssr142866 17 20957020 to 20957043 23 + TSS region transcription start site region 142866
Tssr142867 17 20961640 to 20961667 27 + TSS region transcription start site region 142867
D17Jcs128 17 20964243 to 20964420 177 DNA segment DNA segment, Chr 17, John C. Schimenti 128
Tssr142868 17 20965552 to 20965556 4 + TSS region transcription start site region 142868
Tssr142869 17 20965580 to 20965624 44 + TSS region transcription start site region 142869
Vmn1r-ps145 17 20969061 to 20969484 423 - pseudogene vomeronasal 1 receptor, pseudogene 145
Vmn1r233 17 20993727 to 20994686 959 - protein coding gene vomeronasal 1 receptor 233
Cpgi8651 17 21008823 to 21009326 503 CpG island CpG island 8651
Tssr142870 17 21008921 to 21009013 92 + TSS region transcription start site region 142870
Zfp160 17 21008941 to 21028857 19916 + protein coding gene zinc finger protein 160
Tssr142871 17 21009017 to 21009034 17 + TSS region transcription start site region 142871
Gm6809 17 21031848 to 21042410 10562 + pseudogene predicted gene 6809
Gm5681 17 21059244 to 21060776 1532 - pseudogene predicted gene 5681
Vmn1r-ps146 17 21080134 to 21080658 524 - pseudogene vomeronasal 1 receptor, pseudogene 146
Gm5092 17 21091208 to 21103347 12139 + lincRNA gene predicted gene 5092
Tssr142872 17 21091220 to 21091228 8 + TSS region transcription start site region 142872
Gm6811 17 21093172 to 21094704 1532 + pseudogene predicted gene 6811
Gm7732 17 21129351 to 21130877 1526 + pseudogene predicted gene 7732
Gm7736 17 21152562 to 21154088 1526 + pseudogene predicted gene 7736
Gm7740 17 21175779 to 21177305 1526 + pseudogene predicted gene 7740
Gm7742 17 21198952 to 21200478 1526 + pseudogene predicted gene 7742
Gm41539 17 21201379 to 21203659 2280 + lncRNA gene predicted gene, 41539
D17Jcs129 17 21216546 to 21216718 172 DNA segment DNA segment, Chr 17, John C. Schimenti 129
Vmn1r-ps147 17 21225478 to 21225990 512 - pseudogene vomeronasal 1 receptor, pseudogene 147
Vmn1r234 17 21228826 to 21229815 989 + protein coding gene vomeronasal 1 receptor 234
Vmn1r-ps148 17 21244841 to 21245295 454 + pseudogene vomeronasal 1 receptor, pseudogene 148
Vmn1r235 17 21260427 to 21262863 2436 + protein coding gene vomeronasal 1 receptor 235
Vmn1r-ps149 17 21269288 to 21269470 182 - pseudogene vomeronasal 1 receptor, pseudogene 149
Gm26384 17 21284103 to 21284212 109 - miRNA gene predicted gene, 26384
Vmn1r236 17 21286533 to 21287653 1120 + protein coding gene vomeronasal 1 receptor 236
Vmn1r237 17 21314017 to 21314886 869 + protein coding gene vomeronasal 1 receptor 237
Vmn1r-ps150 17 21323031 to 21323764 733 - pseudogene vomeronasal 1 receptor, pseudogene 150
Cpgi8652 17 21370049 to 21370488 439 CpG island CpG island 8652
Gm18269 17 21374638 to 21376348 1710 + pseudogene predicted gene, 18269
Cpgi8653 17 21383639 to 21383886 247 CpG island CpG island 8653
Tssr142873 17 21383725 to 21383766 41 + TSS region transcription start site region 142873
Zfp677 17 21383748 to 21399265 15517 + protein coding gene zinc finger protein 677
Gm18519 17 21394078 to 21395117 1039 - pseudogene predicted gene, 18519
Gm49691 17 21422649 to 21450267 27618 - antisense lncRNA gene predicted gene, 49691
Zfp54 17 21423227 to 21435384 12157 + protein coding gene zinc finger protein 54
Tssr5027 17 21423232 to 21423264 32 + TSS region transcription start site region 5027
Tssr142874 17 21423486 to 21423516 30 + TSS region transcription start site region 142874
D17Jcs130 17 21428496 to 21428680 184 DNA segment DNA segment, Chr 17, John C. Schimenti 130
Cpgi8654 17 21450256 to 21450693 437 CpG island CpG island 8654
Tssr146589 17 21450256 to 21450273 17 - TSS region transcription start site region 146589
Tssr142875 17 21450361 to 21450397 36 + TSS region transcription start site region 142875
Zfp51 17 21450374 to 21465587 15213 + protein coding gene zinc finger protein 51
Tssr142876 17 21450436 to 21450447 11 + TSS region transcription start site region 142876
Tssr146590 17 21463452 to 21463457 5 - TSS region transcription start site region 146590
Tssr146591 17 21471606 to 21471609 3 - TSS region transcription start site region 146591
Tssr142877 17 21473843 to 21473866 23 + TSS region transcription start site region 142877
Tssr142878 17 21474249 to 21474273 24 + TSS region transcription start site region 142878
Tssr142879 17 21474907 to 21474922 15 + TSS region transcription start site region 142879
Gm26753 17 21485177 to 21488875 3698 - lincRNA gene predicted gene, 26753
Cpgi8655 17 21488750 to 21489381 631 CpG island CpG island 8655
Tssr142880 17 21488982 to 21489060 78 + TSS region transcription start site region 142880
Zfp53 17 21488998 to 21510473 21475 + protein coding gene zinc finger protein 53
Tssr142881 17 21489077 to 21489088 11 + TSS region transcription start site region 142881
Tssr142882 17 21489091 to 21489117 26 + TSS region transcription start site region 142882
Tssr142883 17 21489200 to 21489222 22 + TSS region transcription start site region 142883
Tssr142884 17 21503815 to 21503818 3 + TSS region transcription start site region 142884
Cpgi8656 17 21516603 to 21516978 375 CpG island CpG island 8656
Tssr146592 17 21516939 to 21516960 21 - TSS region transcription start site region 146592
Tssr142885 17 21516998 to 21517018 20 + TSS region transcription start site region 142885
9330136K24Rik 17 21528196 to 21535878 7682 - lincRNA gene RIKEN cDNA 9330136K24 gene
Cpgi8657 17 21532232 to 21532892 660 CpG island CpG island 8657
Tssr5028 17 21535450 to 21535511 61 - TSS region transcription start site region 5028
Tssr142886 17 21535530 to 21535545 15 + TSS region transcription start site region 142886
Zfp52 17 21535539 to 21562601 27062 + protein coding gene zinc finger protein 52
Tssr142887 17 21535547 to 21535571 24 + TSS region transcription start site region 142887
Tssr142888 17 21535572 to 21535589 17 + TSS region transcription start site region 142888
Tssr142889 17 21535593 to 21535628 35 + TSS region transcription start site region 142889
Tssr142890 17 21535634 to 21535661 27 + TSS region transcription start site region 142890
Tssr142891 17 21537082 to 21537095 13 + TSS region transcription start site region 142891
Cpgi8658 17 21566930 to 21567292 362 CpG island CpG island 8658
Tssr142892 17 21566988 to 21567043 55 + TSS region transcription start site region 142892
Zfp948 17 21567008 to 21588699 21691 + protein coding gene zinc finger protein 948
Tssr142893 17 21567056 to 21567067 11 + TSS region transcription start site region 142893
Tssr142894 17 21567419 to 21567424 5 + TSS region transcription start site region 142894
Tssr142895 17 21573839 to 21573843 4 + TSS region transcription start site region 142895
Gm49954 17 21613612 to 21613822 210 + pseudogene predicted gene, 49954
Gm41541 17 21619792 to 21624989 5197 - lincRNA gene predicted gene, 41541
Gm30531 17 21629252 to 21635227 5975 + pseudogene predicted gene, 30531
Tssr146593 17 21650436 to 21650468 32 - TSS region transcription start site region 146593
Cpgi8659 17 21650522 to 21650823 301 CpG island CpG island 8659
Zfp983 17 21650624 to 21664966 14342 + protein coding gene zinc finger protein 983
D17Jcs131 17 21658367 to 21658531 164 DNA segment DNA segment, Chr 17, John C. Schimenti 131
Gm10509 17 21690180 to 21691022 842 + pseudogene predicted gene 10509
Gm10226 17 21691860 to 21692114 254 + protein coding gene predicted gene 10226
Cpgi8660 17 21707609 to 21707953 344 CpG island CpG island 8660
Tssr142896 17 21707682 to 21707741 59 + TSS region transcription start site region 142896
Zfp760 17 21707741 to 21725636 17895 + protein coding gene zinc finger protein 760
Tssr142897 17 21707742 to 21707765 23 + TSS region transcription start site region 142897
Tssr142898 17 21707770 to 21707799 29 + TSS region transcription start site region 142898
Tssr142899 17 21733704 to 21733722 18 + TSS region transcription start site region 142899
Zfp229 17 21733724 to 21748969 15245 + protein coding gene zinc finger protein 229
Tssr142900 17 21733727 to 21733749 22 + TSS region transcription start site region 142900
Cpgi8661 17 21733839 to 21734052 213 CpG island CpG island 8661
D17Jcs132 17 21782377 to 21782625 248 DNA segment DNA segment, Chr 17, John C. Schimenti 132
Gm18270 17 21787895 to 21789331 1436 + pseudogene predicted gene, 18270
4930515G13Rik 17 21801159 to 21801658 499 - pseudogene RIKEN cDNA 4930515G13 gene
Gm9818 17 21808186 to 21808444 258 + pseudogene predicted gene 9818
Zfp820 17 21816876 to 21845759 28883 - protein coding gene zinc finger protein 820
Gm31758 17 21823906 to 21865293 41387 + lncRNA gene predicted gene, 31758
Cpgi8662 17 21845599 to 21845766 167 CpG island CpG island 8662
Zfp995 17 21879570 to 21909926 30356 - protein coding gene zinc finger protein 995
Cpgi8663 17 21909492 to 21909658 166 CpG island CpG island 8663
Tssr146594 17 21909619 to 21909677 58 - TSS region transcription start site region 146594
Gm6540 17 21920204 to 21921172 968 - pseudogene predicted gene 6540
Cpgi8664 17 21920987 to 21921277 290 CpG island CpG island 8664
Tssr146595 17 21921295 to 21921296 1 - TSS region transcription start site region 146595
Zfp942 17 21926963 to 21962464 35501 - protein coding gene zinc finger protein 942
D17Jcs133 17 21958711 to 21958957 246 DNA segment DNA segment, Chr 17, John C. Schimenti 133
Zfp943 17 21962559 to 21994366 31807 + protein coding gene zinc finger prtoein 943
Cpgi8665 17 21962715 to 21962959 244 CpG island CpG island 8665
Tssr142901 17 21962730 to 21962752 22 + TSS region transcription start site region 142901
Tssr142902 17 21963589 to 21963596 7 + TSS region transcription start site region 142902
Gm7805 17 21964136 to 21964583 447 - pseudogene predicted gene 7805
Gm7809 17 21967501 to 21968242 741 - pseudogene predicted gene 7809
Tssr146596 17 21967789 to 21967808 19 - TSS region transcription start site region 146596
Gm49950 17 21968487 to 21968794 307 - pseudogene predicted gene, 49950
Tssr142903 17 21976397 to 21976405 8 + TSS region transcription start site region 142903