Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:20725134-21435658

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn1r227 17 20735100 to 20736126 1026 + protein coding gene vomeronasal 1 receptor 227
Vmn1r228 17 20776059 to 20777501 1442 - protein coding gene vomeronasal 1 receptor 228
D17Jcs127 17 20782837 to 20783011 174 DNA segment DNA segment, Chr 17, John C. Schimenti 127
Vmn1r229 17 20814495 to 20815415 920 + protein coding gene vomeronasal 1 receptor 229
Vmn1r230 17 20846551 to 20847501 950 + protein coding gene vomeronasal 1 receptor 230
Vmn1r231 17 20889716 to 20890651 935 - protein coding gene vomeronasal 1 receptor 231
Gm49761 17 20892028 to 20945149 53121 - lincRNA gene predicted gene, 49761
Vmn1r232 17 20913205 to 20914363 1158 - protein coding gene vomeronasal 1 receptor 232
Vmn1r-ps144 17 20933611 to 20934547 936 + pseudogene vomeronasal 1 receptor, pseudogene 144
Cpgi8650 17 20944978 to 20946226 1248 CpG island CpG island 8650
Tssr146588 17 20945062 to 20945128 66 - TSS region transcription start site region 146588
Tssr142863 17 20945333 to 20945355 22 + TSS region transcription start site region 142863
Tssr142864 17 20945407 to 20945508 101 + TSS region transcription start site region 142864
Ppp2r1a 17 20945454 to 20965905 20451 + protein coding gene protein phosphatase 2, regulatory subunit A, alpha
Tssr5026 17 20955633 to 20955637 4 + TSS region transcription start site region 5026
Tssr142865 17 20955953 to 20955982 29 + TSS region transcription start site region 142865
Tssr142866 17 20957020 to 20957043 23 + TSS region transcription start site region 142866
Tssr142867 17 20961640 to 20961667 27 + TSS region transcription start site region 142867
D17Jcs128 17 20964243 to 20964420 177 DNA segment DNA segment, Chr 17, John C. Schimenti 128
Tssr142868 17 20965552 to 20965556 4 + TSS region transcription start site region 142868
Tssr142869 17 20965580 to 20965624 44 + TSS region transcription start site region 142869
Vmn1r-ps145 17 20969061 to 20969484 423 - pseudogene vomeronasal 1 receptor, pseudogene 145
Vmn1r233 17 20993727 to 20994686 959 - protein coding gene vomeronasal 1 receptor 233
Cpgi8651 17 21008823 to 21009326 503 CpG island CpG island 8651
Tssr142870 17 21008921 to 21009013 92 + TSS region transcription start site region 142870
Zfp160 17 21008941 to 21028857 19916 + protein coding gene zinc finger protein 160
Tssr142871 17 21009017 to 21009034 17 + TSS region transcription start site region 142871
Gm6809 17 21031848 to 21042410 10562 + pseudogene predicted gene 6809
Gm5681 17 21059244 to 21060776 1532 - pseudogene predicted gene 5681
Vmn1r-ps146 17 21080134 to 21080658 524 - pseudogene vomeronasal 1 receptor, pseudogene 146
Gm5092 17 21091208 to 21103347 12139 + lincRNA gene predicted gene 5092
Tssr142872 17 21091220 to 21091228 8 + TSS region transcription start site region 142872
Gm6811 17 21093172 to 21094704 1532 + pseudogene predicted gene 6811
Gm7732 17 21129351 to 21130877 1526 + pseudogene predicted gene 7732
Gm7736 17 21152562 to 21154088 1526 + pseudogene predicted gene 7736
Gm7740 17 21175779 to 21177305 1526 + pseudogene predicted gene 7740
Gm7742 17 21198952 to 21200478 1526 + pseudogene predicted gene 7742
Gm41539 17 21201379 to 21203659 2280 + lncRNA gene predicted gene, 41539
D17Jcs129 17 21216546 to 21216718 172 DNA segment DNA segment, Chr 17, John C. Schimenti 129
Vmn1r-ps147 17 21225478 to 21225990 512 - pseudogene vomeronasal 1 receptor, pseudogene 147
Vmn1r234 17 21228826 to 21229815 989 + protein coding gene vomeronasal 1 receptor 234
Vmn1r-ps148 17 21244841 to 21245295 454 + pseudogene vomeronasal 1 receptor, pseudogene 148
Vmn1r235 17 21260427 to 21262863 2436 + protein coding gene vomeronasal 1 receptor 235
Vmn1r-ps149 17 21269288 to 21269470 182 - pseudogene vomeronasal 1 receptor, pseudogene 149
Gm26384 17 21284103 to 21284212 109 - miRNA gene predicted gene, 26384
Vmn1r236 17 21286533 to 21287653 1120 + protein coding gene vomeronasal 1 receptor 236
Vmn1r237 17 21314017 to 21314886 869 + protein coding gene vomeronasal 1 receptor 237
Vmn1r-ps150 17 21323031 to 21323764 733 - pseudogene vomeronasal 1 receptor, pseudogene 150
Cpgi8652 17 21370049 to 21370488 439 CpG island CpG island 8652
Gm18269 17 21374638 to 21376348 1710 + pseudogene predicted gene, 18269
Cpgi8653 17 21383639 to 21383886 247 CpG island CpG island 8653
Tssr142873 17 21383725 to 21383766 41 + TSS region transcription start site region 142873
Zfp677 17 21383748 to 21399265 15517 + protein coding gene zinc finger protein 677
Gm18519 17 21394078 to 21395117 1039 - pseudogene predicted gene, 18519
Gm49691 17 21422649 to 21450267 27618 - antisense lncRNA gene predicted gene, 49691
Zfp54 17 21423227 to 21435384 12157 + protein coding gene zinc finger protein 54
Tssr5027 17 21423232 to 21423264 32 + TSS region transcription start site region 5027
Tssr142874 17 21423486 to 21423516 30 + TSS region transcription start site region 142874
D17Jcs130 17 21428496 to 21428680 184 DNA segment DNA segment, Chr 17, John C. Schimenti 130