Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:20544495-21085415

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn2r109 17 20540517 to 20564756 24239 - protein coding gene vomeronasal 2, receptor 109
Gm5145 17 20570369 to 20571198 829 + pseudogene predicted pseudogene 5145
Cpgi8649 17 20570801 to 20571087 286 CpG island CpG island 8649
Vmn2r110 17 20573829 to 20596259 22430 - protein coding gene vomeronasal 2, receptor 110
D17Jcs126 17 20588475 to 20588669 194 DNA segment DNA segment, Chr 17, John C. Schimenti 126
Fpr-rs3 17 20623846 to 20624877 1031 - protein coding gene formyl peptide receptor, related sequence 3
Gm5492 17 20661558 to 20662067 509 + pseudogene predicted gene 5492
Tssr142861 17 20661799 to 20661818 19 + TSS region transcription start site region 142861
Tssr142862 17 20661981 to 20662008 27 + TSS region transcription start site region 142862
Vmn1r226 17 20687508 to 20688404 896 + protein coding gene vomeronasal 1 receptor 226
Vmn1r227 17 20735100 to 20736126 1026 + protein coding gene vomeronasal 1 receptor 227
Vmn1r228 17 20776059 to 20777501 1442 - protein coding gene vomeronasal 1 receptor 228
D17Jcs127 17 20782837 to 20783011 174 DNA segment DNA segment, Chr 17, John C. Schimenti 127
Vmn1r229 17 20814495 to 20815415 920 + protein coding gene vomeronasal 1 receptor 229
Vmn1r230 17 20846551 to 20847501 950 + protein coding gene vomeronasal 1 receptor 230
Vmn1r231 17 20889716 to 20890651 935 - protein coding gene vomeronasal 1 receptor 231
Gm49761 17 20892028 to 20945149 53121 - lincRNA gene predicted gene, 49761
Vmn1r232 17 20913205 to 20914363 1158 - protein coding gene vomeronasal 1 receptor 232
Vmn1r-ps144 17 20933611 to 20934547 936 + pseudogene vomeronasal 1 receptor, pseudogene 144
Cpgi8650 17 20944978 to 20946226 1248 CpG island CpG island 8650
Tssr146588 17 20945062 to 20945128 66 - TSS region transcription start site region 146588
Tssr142863 17 20945333 to 20945355 22 + TSS region transcription start site region 142863
Tssr142864 17 20945407 to 20945508 101 + TSS region transcription start site region 142864
Ppp2r1a 17 20945454 to 20965905 20451 + protein coding gene protein phosphatase 2, regulatory subunit A, alpha
Tssr5026 17 20955633 to 20955637 4 + TSS region transcription start site region 5026
Tssr142865 17 20955953 to 20955982 29 + TSS region transcription start site region 142865
Tssr142866 17 20957020 to 20957043 23 + TSS region transcription start site region 142866
Tssr142867 17 20961640 to 20961667 27 + TSS region transcription start site region 142867
D17Jcs128 17 20964243 to 20964420 177 DNA segment DNA segment, Chr 17, John C. Schimenti 128
Tssr142868 17 20965552 to 20965556 4 + TSS region transcription start site region 142868
Tssr142869 17 20965580 to 20965624 44 + TSS region transcription start site region 142869
Vmn1r-ps145 17 20969061 to 20969484 423 - pseudogene vomeronasal 1 receptor, pseudogene 145
Vmn1r233 17 20993727 to 20994686 959 - protein coding gene vomeronasal 1 receptor 233
Cpgi8651 17 21008823 to 21009326 503 CpG island CpG island 8651
Tssr142870 17 21008921 to 21009013 92 + TSS region transcription start site region 142870
Zfp160 17 21008941 to 21028857 19916 + protein coding gene zinc finger protein 160
Tssr142871 17 21009017 to 21009034 17 + TSS region transcription start site region 142871
Gm6809 17 21031848 to 21042410 10562 + pseudogene predicted gene 6809
Gm5681 17 21059244 to 21060776 1532 - pseudogene predicted gene 5681
Vmn1r-ps146 17 21080134 to 21080658 524 - pseudogene vomeronasal 1 receptor, pseudogene 146