Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:20436059-21117501

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D17Jcs1 17 20456075 to 20456279 204 DNA segment DNA segment, Chr 17, John C. Schimenti 1
Vmn2r108 17 20462373 to 20481236 18863 - protein coding gene vomeronasal 2, receptor 108
D17Jcs125 17 20476721 to 20476925 204 DNA segment DNA segment, Chr 17, John C. Schimenti 125
D17Dcr34 17 20476807 to 20476902 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 34
Vmn1r225 17 20502299 to 20503195 896 + protein coding gene vomeronasal 1 receptor 225
Vmn2r109 17 20540517 to 20564756 24239 - protein coding gene vomeronasal 2, receptor 109
Gm5145 17 20570369 to 20571198 829 + pseudogene predicted pseudogene 5145
Cpgi8649 17 20570801 to 20571087 286 CpG island CpG island 8649
Vmn2r110 17 20573829 to 20596259 22430 - protein coding gene vomeronasal 2, receptor 110
D17Jcs126 17 20588475 to 20588669 194 DNA segment DNA segment, Chr 17, John C. Schimenti 126
Fpr-rs3 17 20623846 to 20624877 1031 - protein coding gene formyl peptide receptor, related sequence 3
Gm5492 17 20661558 to 20662067 509 + pseudogene predicted gene 5492
Tssr142861 17 20661799 to 20661818 19 + TSS region transcription start site region 142861
Tssr142862 17 20661981 to 20662008 27 + TSS region transcription start site region 142862
Vmn1r226 17 20687508 to 20688404 896 + protein coding gene vomeronasal 1 receptor 226
Vmn1r227 17 20735100 to 20736126 1026 + protein coding gene vomeronasal 1 receptor 227
Vmn1r228 17 20776059 to 20777501 1442 - protein coding gene vomeronasal 1 receptor 228
D17Jcs127 17 20782837 to 20783011 174 DNA segment DNA segment, Chr 17, John C. Schimenti 127
Vmn1r229 17 20814495 to 20815415 920 + protein coding gene vomeronasal 1 receptor 229
Vmn1r230 17 20846551 to 20847501 950 + protein coding gene vomeronasal 1 receptor 230
Vmn1r231 17 20889716 to 20890651 935 - protein coding gene vomeronasal 1 receptor 231
Gm49761 17 20892028 to 20945149 53121 - lincRNA gene predicted gene, 49761
Vmn1r232 17 20913205 to 20914363 1158 - protein coding gene vomeronasal 1 receptor 232
Vmn1r-ps144 17 20933611 to 20934547 936 + pseudogene vomeronasal 1 receptor, pseudogene 144
Cpgi8650 17 20944978 to 20946226 1248 CpG island CpG island 8650
Tssr146588 17 20945062 to 20945128 66 - TSS region transcription start site region 146588
Tssr142863 17 20945333 to 20945355 22 + TSS region transcription start site region 142863
Tssr142864 17 20945407 to 20945508 101 + TSS region transcription start site region 142864
Ppp2r1a 17 20945454 to 20965905 20451 + protein coding gene protein phosphatase 2, regulatory subunit A, alpha
Tssr5026 17 20955633 to 20955637 4 + TSS region transcription start site region 5026
Tssr142865 17 20955953 to 20955982 29 + TSS region transcription start site region 142865
Tssr142866 17 20957020 to 20957043 23 + TSS region transcription start site region 142866
Tssr142867 17 20961640 to 20961667 27 + TSS region transcription start site region 142867
D17Jcs128 17 20964243 to 20964420 177 DNA segment DNA segment, Chr 17, John C. Schimenti 128
Tssr142868 17 20965552 to 20965556 4 + TSS region transcription start site region 142868
Tssr142869 17 20965580 to 20965624 44 + TSS region transcription start site region 142869
Vmn1r-ps145 17 20969061 to 20969484 423 - pseudogene vomeronasal 1 receptor, pseudogene 145
Vmn1r233 17 20993727 to 20994686 959 - protein coding gene vomeronasal 1 receptor 233
Cpgi8651 17 21008823 to 21009326 503 CpG island CpG island 8651
Tssr142870 17 21008921 to 21009013 92 + TSS region transcription start site region 142870
Zfp160 17 21008941 to 21028857 19916 + protein coding gene zinc finger protein 160
Tssr142871 17 21009017 to 21009034 17 + TSS region transcription start site region 142871
Gm6809 17 21031848 to 21042410 10562 + pseudogene predicted gene 6809
Gm5681 17 21059244 to 21060776 1532 - pseudogene predicted gene 5681
Vmn1r-ps146 17 21080134 to 21080658 524 - pseudogene vomeronasal 1 receptor, pseudogene 146
Gm5092 17 21091208 to 21103347 12139 + lincRNA gene predicted gene 5092
Tssr142872 17 21091220 to 21091228 8 + TSS region transcription start site region 142872
Gm6811 17 21093172 to 21094704 1532 + pseudogene predicted gene 6811