Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:19006953-21237553

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr142856 17 19031812 to 19031817 5 + TSS region transcription start site region 142856
Vmn2r98 17 19053493 to 19081311 27818 + protein coding gene vomeronasal 2, receptor 98
D17Jcs88 17 19060002 to 19060201 199 DNA segment DNA segment, Chr 17, John C. Schimenti 88
Vmn2r-ps119 17 19141468 to 19176742 35274 + pseudogene vomeronasal 2, receptor, pseudogene 119
D17Jcs10 17 19144070 to 19144378 308 DNA segment DNA segment, Chr 17, John C. Schimenti 10
D17Jcs9 17 19204259 to 19204504 245 DNA segment DNA segment, Chr 17, John C. Schimenti 9
Gm49753 17 19257930 to 19277565 19635 + lincRNA gene predicted gene, 49753
Gm49752 17 19277337 to 19360785 83448 + pseudogene predicted gene, 49752
Gm6759 17 19277337 to 19277968 631 + pseudogene predicted gene 6759
Vmn2r-ps120 17 19279322 to 19304478 25156 + pseudogene vomeronasal 2, receptor, pseudogene 120
Gm7605 17 19360108 to 19360912 804 + pseudogene predicted gene 7605
D17Jcs8 17 19360761 to 19361021 260 DNA segment DNA segment, Chr 17, John C. Schimenti 8
Vmn2r99 17 19362135 to 19394590 32455 + protein coding gene vomeronasal 2, receptor 99
4930549P19Rik 17 19415431 to 19490072 74641 + lincRNA gene RIKEN cDNA 4930549P19 gene
Tssr142857 17 19435331 to 19435334 3 + TSS region transcription start site region 142857
Tssr142858 17 19445236 to 19445237 1 + TSS region transcription start site region 142858
Vmn2r-ps121 17 19453325 to 19454575 1250 + pseudogene vomeronasal 2, receptor, pseudogene 121
Tssr146584 17 19487359 to 19487394 35 - TSS region transcription start site region 146584
Vmn2r100 17 19504811 to 19532060 27249 + protein coding gene vomeronasal 2, receptor 100
Gm18710 17 19532724 to 19533266 542 + pseudogene predicted gene, 18710
Tssr146585 17 19574355 to 19574384 29 - TSS region transcription start site region 146585
Tssr146586 17 19574385 to 19574390 5 - TSS region transcription start site region 146586
Vmn2r101 17 19577231 to 19612317 35086 + protein coding gene vomeronasal 2, receptor 101
Tssr146587 17 19629399 to 19629401 2 - TSS region transcription start site region 146587
Vmn2r102 17 19660399 to 19694748 34349 + protein coding gene vomeronasal 2, receptor 102
D17Jcs6 17 19703707 to 19703953 246 DNA segment DNA segment, Chr 17, John C. Schimenti 6
Vmn2r-ps122 17 19727139 to 19728044 905 + pseudogene vomeronasal 2, receptor, pseudogene 122
Vmn2r103 17 19773363 to 19812536 39173 + protein coding gene vomeronasal 2, receptor 103
Vmn2r-ps123 17 19838565 to 19874206 35641 + pseudogene vomeronasal 2, receptor, pseudogene 123
Vmn2r-ps124 17 19937213 to 19938078 865 + pseudogene vomeronasal 2, receptor, pseudogene 124
Vmn2r-ps125 17 19986880 to 19987797 917 - pseudogene vomeronasal 2, receptor, pseudogene 125
Tssr5025 17 19988051 to 19988054 3 + TSS region transcription start site region 5025
Vmn2r104 17 20029425 to 20048205 18780 - protein coding gene vomeronasal 2, receptor 104
Tssr142859 17 20049000 to 20049037 37 + TSS region transcription start site region 142859
Gm3547 17 20049043 to 20049287 244 + pseudogene predicted gene 3547
Vmn2r-ps126 17 20079965 to 20082301 2336 + pseudogene vomeronasal 2, receptor, pseudogene 126
D17Dcr32 17 20110196 to 20110291 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 32
Fpr-rs7 17 20113210 to 20114226 1016 - protein coding gene formyl peptide receptor, related sequence 7
Vmn1r-ps139 17 20121953 to 20122553 600 - pseudogene vomeronasal 1 receptor, pseudogene 139
D17Jcs37 17 20127840 to 20128057 217 DNA segment DNA segment, Chr 17, John C. Schimenti 37
Leci2 17 20127913 to 20128037 124 QTL leukocyte endothelial cell interactions 2
D17Mit197 17 20127913 to 20128037 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 197
Fpr-rs6 17 20182078 to 20183097 1019 - protein coding gene formyl peptide receptor, related sequence 6
Vmn1r-ps140 17 20191655 to 20192460 805 - pseudogene vomeronasal 1 receptor, pseudogene 140
Vmn2r105 17 20208230 to 20234872 26642 - protein coding gene vomeronasal 2, receptor 105
D17Jcs3 17 20214346 to 20214585 239 DNA segment DNA segment, Chr 17, John C. Schimenti 3
Vmn2r106 17 20267547 to 20285430 17883 - protein coding gene vomeronasal 2, receptor 106
Tssr142860 17 20277297 to 20277298 1 + TSS region transcription start site region 142860
Vmn2r-ps127 17 20329640 to 20336408 6768 - pseudogene vomeronasal 2, receptor, pseudogene 127
Vmn2r107 17 20345425 to 20375772 30347 + protein coding gene vomeronasal 2, receptor 107
D17Jcs2 17 20348526 to 20348804 278 DNA segment DNA segment, Chr 17, John C. Schimenti 2
D17Dcr33 17 20370205 to 20370300 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 33
Gm7217 17 20379063 to 20379671 608 + pseudogene predicted gene 7217
Vmn1r-ps141 17 20405004 to 20405756 752 + pseudogene vomeronasal 1 receptor, pseudogene 141
Vmn1r224 17 20419163 to 20420059 896 + protein coding gene vomeronasal 1 receptor 224
Vmn1r-ps142 17 20426432 to 20427278 846 - pseudogene vomeronasal 1 receptor, pseudogene 142
Vmn1r-ps143 17 20432830 to 20433433 603 - pseudogene vomeronasal 1 receptor, pseudogene 143
D17Jcs1 17 20456075 to 20456279 204 DNA segment DNA segment, Chr 17, John C. Schimenti 1
Vmn2r108 17 20462373 to 20481236 18863 - protein coding gene vomeronasal 2, receptor 108
D17Jcs125 17 20476721 to 20476925 204 DNA segment DNA segment, Chr 17, John C. Schimenti 125
D17Dcr34 17 20476807 to 20476902 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 34
Vmn1r225 17 20502299 to 20503195 896 + protein coding gene vomeronasal 1 receptor 225
Vmn2r109 17 20540517 to 20564756 24239 - protein coding gene vomeronasal 2, receptor 109
Gm5145 17 20570369 to 20571198 829 + pseudogene predicted pseudogene 5145
Cpgi8649 17 20570801 to 20571087 286 CpG island CpG island 8649
Vmn2r110 17 20573829 to 20596259 22430 - protein coding gene vomeronasal 2, receptor 110
D17Jcs126 17 20588475 to 20588669 194 DNA segment DNA segment, Chr 17, John C. Schimenti 126
Fpr-rs3 17 20623846 to 20624877 1031 - protein coding gene formyl peptide receptor, related sequence 3
Gm5492 17 20661558 to 20662067 509 + pseudogene predicted gene 5492
Tssr142861 17 20661799 to 20661818 19 + TSS region transcription start site region 142861
Tssr142862 17 20661981 to 20662008 27 + TSS region transcription start site region 142862
Vmn1r226 17 20687508 to 20688404 896 + protein coding gene vomeronasal 1 receptor 226
Vmn1r227 17 20735100 to 20736126 1026 + protein coding gene vomeronasal 1 receptor 227
Vmn1r228 17 20776059 to 20777501 1442 - protein coding gene vomeronasal 1 receptor 228
D17Jcs127 17 20782837 to 20783011 174 DNA segment DNA segment, Chr 17, John C. Schimenti 127
Vmn1r229 17 20814495 to 20815415 920 + protein coding gene vomeronasal 1 receptor 229
Vmn1r230 17 20846551 to 20847501 950 + protein coding gene vomeronasal 1 receptor 230
Vmn1r231 17 20889716 to 20890651 935 - protein coding gene vomeronasal 1 receptor 231
Gm49761 17 20892028 to 20945149 53121 - lincRNA gene predicted gene, 49761
Vmn1r232 17 20913205 to 20914363 1158 - protein coding gene vomeronasal 1 receptor 232
Vmn1r-ps144 17 20933611 to 20934547 936 + pseudogene vomeronasal 1 receptor, pseudogene 144
Cpgi8650 17 20944978 to 20946226 1248 CpG island CpG island 8650
Tssr146588 17 20945062 to 20945128 66 - TSS region transcription start site region 146588
Tssr142863 17 20945333 to 20945355 22 + TSS region transcription start site region 142863
Tssr142864 17 20945407 to 20945508 101 + TSS region transcription start site region 142864
Ppp2r1a 17 20945454 to 20965905 20451 + protein coding gene protein phosphatase 2, regulatory subunit A, alpha
Tssr5026 17 20955633 to 20955637 4 + TSS region transcription start site region 5026
Tssr142865 17 20955953 to 20955982 29 + TSS region transcription start site region 142865
Tssr142866 17 20957020 to 20957043 23 + TSS region transcription start site region 142866
Tssr142867 17 20961640 to 20961667 27 + TSS region transcription start site region 142867
D17Jcs128 17 20964243 to 20964420 177 DNA segment DNA segment, Chr 17, John C. Schimenti 128
Tssr142868 17 20965552 to 20965556 4 + TSS region transcription start site region 142868
Tssr142869 17 20965580 to 20965624 44 + TSS region transcription start site region 142869
Vmn1r-ps145 17 20969061 to 20969484 423 - pseudogene vomeronasal 1 receptor, pseudogene 145
Vmn1r233 17 20993727 to 20994686 959 - protein coding gene vomeronasal 1 receptor 233
Cpgi8651 17 21008823 to 21009326 503 CpG island CpG island 8651
Tssr142870 17 21008921 to 21009013 92 + TSS region transcription start site region 142870
Zfp160 17 21008941 to 21028857 19916 + protein coding gene zinc finger protein 160
Tssr142871 17 21009017 to 21009034 17 + TSS region transcription start site region 142871
Gm6809 17 21031848 to 21042410 10562 + pseudogene predicted gene 6809
Gm5681 17 21059244 to 21060776 1532 - pseudogene predicted gene 5681
Vmn1r-ps146 17 21080134 to 21080658 524 - pseudogene vomeronasal 1 receptor, pseudogene 146
Gm5092 17 21091208 to 21103347 12139 + lincRNA gene predicted gene 5092
Tssr142872 17 21091220 to 21091228 8 + TSS region transcription start site region 142872
Gm6811 17 21093172 to 21094704 1532 + pseudogene predicted gene 6811
Gm7732 17 21129351 to 21130877 1526 + pseudogene predicted gene 7732
Gm7736 17 21152562 to 21154088 1526 + pseudogene predicted gene 7736
Gm7740 17 21175779 to 21177305 1526 + pseudogene predicted gene 7740
Gm7742 17 21198952 to 21200478 1526 + pseudogene predicted gene 7742
Gm41539 17 21201379 to 21203659 2280 + lncRNA gene predicted gene, 41539
D17Jcs129 17 21216546 to 21216718 172 DNA segment DNA segment, Chr 17, John C. Schimenti 129
Vmn1r-ps147 17 21225478 to 21225990 512 - pseudogene vomeronasal 1 receptor, pseudogene 147
Vmn1r234 17 21228826 to 21229815 989 + protein coding gene vomeronasal 1 receptor 234