Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:17899097-20019100

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr142835 17 17899627 to 17899632 5 + TSS region transcription start site region 142835
Tssr142836 17 17904038 to 17904047 9 + TSS region transcription start site region 142836
Gm7531 17 17906549 to 17907275 726 - pseudogene predicted gene 7531
Tssr142837 17 17909467 to 17909468 1 + TSS region transcription start site region 142837
Cpgi8648 17 17909783 to 17910436 653 CpG island CpG island 8648
Tssr146578 17 17910195 to 17910219 24 - TSS region transcription start site region 146578
Tssr146579 17 17910244 to 17910273 29 - TSS region transcription start site region 146579
Gm9481 17 17910572 to 17913013 2441 + pseudogene predicted gene 9481
Gm7535 17 17911042 to 17912725 1683 - pseudogene predicted gene 7535
Tssr142838 17 17915914 to 17915947 33 + TSS region transcription start site region 142838
Tssr142839 17 17916184 to 17916196 12 + TSS region transcription start site region 142839
Tssr142840 17 17917484 to 17917495 11 + TSS region transcription start site region 142840
Tssr142841 17 17917575 to 17917586 11 + TSS region transcription start site region 142841
Tssr142842 17 17917788 to 17917802 14 + TSS region transcription start site region 142842
Tssr142843 17 17917830 to 17917839 9 + TSS region transcription start site region 142843
Tssr142844 17 17917862 to 17917868 6 + TSS region transcription start site region 142844
Tssr142845 17 17917877 to 17917889 12 + TSS region transcription start site region 142845
Gm5966 17 17920258 to 17921480 1222 + pseudogene predicted gene 5966
Tssr142846 17 17927993 to 17928022 29 + TSS region transcription start site region 142846
Tssr142847 17 17928229 to 17928239 10 + TSS region transcription start site region 142847
Tssr142848 17 17928278 to 17928304 26 + TSS region transcription start site region 142848
Tssr142849 17 17928338 to 17928381 43 + TSS region transcription start site region 142849
Tssr142850 17 17931997 to 17932008 11 + TSS region transcription start site region 142850
Tssr142851 17 17932292 to 17932319 27 + TSS region transcription start site region 142851
Tssr142852 17 17937758 to 17937778 20 + TSS region transcription start site region 142852
Tssr142853 17 17939583 to 17939603 20 + TSS region transcription start site region 142853
Tssr142854 17 17949945 to 17949980 35 + TSS region transcription start site region 142854
Fpr3 17 17970458 to 17971677 1219 + protein coding gene formyl peptide receptor 3
Fpr-rs5 17 17990498 to 17991464 966 + pseudogene formyl peptide receptor, related sequence 5
Fpr-rs4 17 18021733 to 18022704 971 + protein coding gene formyl peptide receptor, related sequence 4
Vmn2r124 17 18049484 to 18074220 24736 + protein coding gene vomeronasal 2, receptor 124
Vmn2r91 17 18085057 to 18136643 51586 + protein coding gene vomeronasal 2, receptor 91
Vmn2r92 17 18151930 to 18185178 33248 + protein coding gene vomeronasal 2, receptor 92
Gm29986 17 18219105 to 18234716 15611 - protein coding gene predicted gene, 29986
Tssr146580 17 18231552 to 18231559 7 - TSS region transcription start site region 146580
Vmn2r94 17 18243570 to 18277566 33996 - protein coding gene vomeronasal 2, receptor 94
Vmn2r93 17 18298281 to 18326441 28160 + protein coding gene vomeronasal 2, receptor 93
Vmn2r95 17 18424104 to 18452324 28220 + protein coding gene vomeronasal 2, receptor 95
Gm49963 17 18476532 to 18476654 122 - pseudogene predicted gene, 49963
Vmn2r-ps114 17 18493743 to 18494958 1215 + pseudogene vomeronasal 2, receptor, pseudogene 114
D17Mit59 17 18502799 to 18502945 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 59
Vmn2r96 17 18573255 to 18598157 24902 + protein coding gene vomeronasal 2, receptor 96
Vmn2r-ps115 17 18694403 to 18707120 12717 + pseudogene vomeronasal 2, receptor, pseudogene 115
Vmn2r-ps116 17 18763265 to 18763390 125 + pseudogene vomeronasal 2, receptor, pseudogene 116
Vmn2r-ps117 17 18822560 to 18838742 16182 + pseudogene vomeronasal 2, receptor, pseudogene 117
Vmn2r97 17 18914322 to 18948071 33749 + protein coding gene vomeronasal 2, receptor 97
Gm41538 17 18954534 to 18969041 14507 - lncRNA gene predicted gene, 41538
Tssr142855 17 18958079 to 18958084 5 + TSS region transcription start site region 142855
Tssr146581 17 18959097 to 18959100 3 - TSS region transcription start site region 146581
Tssr146582 17 18968981 to 18968998 17 - TSS region transcription start site region 146582
Tssr146583 17 18969027 to 18969060 33 - TSS region transcription start site region 146583
Vmn2r-ps118 17 18989618 to 18990880 1262 + pseudogene vomeronasal 2, receptor, pseudogene 118
Tssr142856 17 19031812 to 19031817 5 + TSS region transcription start site region 142856
Vmn2r98 17 19053493 to 19081311 27818 + protein coding gene vomeronasal 2, receptor 98
D17Jcs88 17 19060002 to 19060201 199 DNA segment DNA segment, Chr 17, John C. Schimenti 88
Vmn2r-ps119 17 19141468 to 19176742 35274 + pseudogene vomeronasal 2, receptor, pseudogene 119
D17Jcs10 17 19144070 to 19144378 308 DNA segment DNA segment, Chr 17, John C. Schimenti 10
D17Jcs9 17 19204259 to 19204504 245 DNA segment DNA segment, Chr 17, John C. Schimenti 9
Gm49753 17 19257930 to 19277565 19635 + lincRNA gene predicted gene, 49753
Gm49752 17 19277337 to 19360785 83448 + pseudogene predicted gene, 49752
Gm6759 17 19277337 to 19277968 631 + pseudogene predicted gene 6759
Vmn2r-ps120 17 19279322 to 19304478 25156 + pseudogene vomeronasal 2, receptor, pseudogene 120
Gm7605 17 19360108 to 19360912 804 + pseudogene predicted gene 7605
D17Jcs8 17 19360761 to 19361021 260 DNA segment DNA segment, Chr 17, John C. Schimenti 8
Vmn2r99 17 19362135 to 19394590 32455 + protein coding gene vomeronasal 2, receptor 99
4930549P19Rik 17 19415431 to 19490072 74641 + lincRNA gene RIKEN cDNA 4930549P19 gene
Tssr142857 17 19435331 to 19435334 3 + TSS region transcription start site region 142857
Tssr142858 17 19445236 to 19445237 1 + TSS region transcription start site region 142858
Vmn2r-ps121 17 19453325 to 19454575 1250 + pseudogene vomeronasal 2, receptor, pseudogene 121
Tssr146584 17 19487359 to 19487394 35 - TSS region transcription start site region 146584
Vmn2r100 17 19504811 to 19532060 27249 + protein coding gene vomeronasal 2, receptor 100
Gm18710 17 19532724 to 19533266 542 + pseudogene predicted gene, 18710
Tssr146585 17 19574355 to 19574384 29 - TSS region transcription start site region 146585
Tssr146586 17 19574385 to 19574390 5 - TSS region transcription start site region 146586
Vmn2r101 17 19577231 to 19612317 35086 + protein coding gene vomeronasal 2, receptor 101
Tssr146587 17 19629399 to 19629401 2 - TSS region transcription start site region 146587
Vmn2r102 17 19660399 to 19694748 34349 + protein coding gene vomeronasal 2, receptor 102
D17Jcs6 17 19703707 to 19703953 246 DNA segment DNA segment, Chr 17, John C. Schimenti 6
Vmn2r-ps122 17 19727139 to 19728044 905 + pseudogene vomeronasal 2, receptor, pseudogene 122
Vmn2r103 17 19773363 to 19812536 39173 + protein coding gene vomeronasal 2, receptor 103
Vmn2r-ps123 17 19838565 to 19874206 35641 + pseudogene vomeronasal 2, receptor, pseudogene 123
Vmn2r-ps124 17 19937213 to 19938078 865 + pseudogene vomeronasal 2, receptor, pseudogene 124
Vmn2r-ps125 17 19986880 to 19987797 917 - pseudogene vomeronasal 2, receptor, pseudogene 125
Tssr5025 17 19988051 to 19988054 3 + TSS region transcription start site region 5025