Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:17809104-19067324

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr146565 17 17826861 to 17826872 11 - TSS region transcription start site region 146565
Cpgi8644 17 17826924 to 17827457 533 CpG island CpG island 8644
Tssr142801 17 17826947 to 17826964 17 + TSS region transcription start site region 142801
Tssr5018 17 17827093 to 17827121 28 + TSS region transcription start site region 5018
Tssr142802 17 17827134 to 17827163 29 + TSS region transcription start site region 142802
Spaca6 17 17827158 to 17843009 15851 + protein coding gene sperm acrosome associated 6
Mir99b 17 17830188 to 17830257 69 + miRNA gene microRNA 99b
Mirc9 17 17830188 to 17830879 691 complex/cluster/region microRNA cluster 9, including Mir99b through Mir125a
Gm25927 17 17830343 to 17830459 116 - miRNA gene predicted gene, 25927
Mirlet7e 17 17830352 to 17830444 92 + miRNA gene microRNA let7e
Tssr142803 17 17830620 to 17830634 14 + TSS region transcription start site region 142803
Mir125a 17 17830812 to 17830879 67 + miRNA gene microRNA 125a
Tssr142804 17 17830876 to 17830880 4 + TSS region transcription start site region 142804
Tssr142805 17 17831047 to 17831069 22 + TSS region transcription start site region 142805
Tssr142806 17 17831076 to 17831095 19 + TSS region transcription start site region 142806
Tssr142807 17 17831137 to 17831145 8 + TSS region transcription start site region 142807
Tssr142808 17 17831298 to 17831316 18 + TSS region transcription start site region 142808
Tssr5019 17 17831642 to 17831654 12 + TSS region transcription start site region 5019
Tssr5020 17 17832459 to 17832473 14 + TSS region transcription start site region 5020
Tssr142809 17 17832971 to 17832975 4 + TSS region transcription start site region 142809
Cpgi8645 17 17837716 to 17838628 912 CpG island CpG island 8645
Tssr142810 17 17838071 to 17838088 17 + TSS region transcription start site region 142810
Tssr146566 17 17838202 to 17838208 6 - TSS region transcription start site region 146566
Tssr142811 17 17838308 to 17838333 25 + TSS region transcription start site region 142811
Tssr142812 17 17838389 to 17838443 54 + TSS region transcription start site region 142812
Tssr142813 17 17838457 to 17838475 18 + TSS region transcription start site region 142813
Has1 17 17843323 to 17855205 11882 - protein coding gene hyaluronan synthase 1
Cpgi8646 17 17843925 to 17844304 379 CpG island CpG island 8646
Cpgi8647 17 17849899 to 17850644 745 CpG island CpG island 8647
Tssr142814 17 17850019 to 17850051 32 + TSS region transcription start site region 142814
Gm36907 17 17850134 to 17866291 16157 + lncRNA gene predicted gene, 36907
Tssr146567 17 17855200 to 17855205 5 - TSS region transcription start site region 146567
Tssr142815 17 17865451 to 17865471 20 + TSS region transcription start site region 142815
Tssr142816 17 17867055 to 17867062 7 + TSS region transcription start site region 142816
Tssr142817 17 17867339 to 17867350 11 + TSS region transcription start site region 142817
Tssr5021 17 17871141 to 17871150 9 + TSS region transcription start site region 5021
Tssr5022 17 17871165 to 17871173 8 + TSS region transcription start site region 5022
Tssr5023 17 17871694 to 17871707 13 - TSS region transcription start site region 5023
Tssr142818 17 17871963 to 17871972 9 + TSS region transcription start site region 142818
Tssr142819 17 17873739 to 17873745 6 + TSS region transcription start site region 142819
Fpr1 17 17876471 to 17883939 7468 - protein coding gene formyl peptide receptor 1
Tssr146568 17 17876668 to 17876680 12 - TSS region transcription start site region 146568
Tssr146569 17 17876706 to 17876718 12 - TSS region transcription start site region 146569
Tssr146570 17 17876991 to 17877002 11 - TSS region transcription start site region 146570
Tssr146571 17 17877018 to 17877031 13 - TSS region transcription start site region 146571
Tssr146572 17 17877105 to 17877125 20 - TSS region transcription start site region 146572
Tssr146573 17 17877535 to 17877552 17 - TSS region transcription start site region 146573
Tssr142820 17 17882874 to 17882912 38 + TSS region transcription start site region 142820
Tssr5024 17 17882948 to 17882979 31 + TSS region transcription start site region 5024
Tssr146574 17 17883920 to 17883954 34 - TSS region transcription start site region 146574
Tssr146575 17 17883963 to 17883974 11 - TSS region transcription start site region 146575
Tssr142821 17 17887093 to 17887135 42 + TSS region transcription start site region 142821
Tssr142822 17 17887807 to 17887818 11 + TSS region transcription start site region 142822
Fpr2 17 17887824 to 17893952 6128 + protein coding gene formyl peptide receptor 2
Tssr142823 17 17887826 to 17887837 11 + TSS region transcription start site region 142823
Tssr142824 17 17887840 to 17887865 25 + TSS region transcription start site region 142824
Tssr146576 17 17889729 to 17889734 5 - TSS region transcription start site region 146576
Tssr142825 17 17889944 to 17889960 16 + TSS region transcription start site region 142825
Tssr142826 17 17890098 to 17890112 14 + TSS region transcription start site region 142826
Tssr142827 17 17890348 to 17890352 4 + TSS region transcription start site region 142827
Tssr142828 17 17890588 to 17890600 12 + TSS region transcription start site region 142828
Tssr142829 17 17890609 to 17890630 21 + TSS region transcription start site region 142829
Tssr142830 17 17890638 to 17890645 7 + TSS region transcription start site region 142830
Tssr142831 17 17890697 to 17890700 3 + TSS region transcription start site region 142831
Tssr142832 17 17890741 to 17890752 11 + TSS region transcription start site region 142832
Tssr142833 17 17891414 to 17891426 12 + TSS region transcription start site region 142833
Tssr142834 17 17893810 to 17893859 49 + TSS region transcription start site region 142834
Tssr146577 17 17893949 to 17893961 12 - TSS region transcription start site region 146577
Tssr142835 17 17899627 to 17899632 5 + TSS region transcription start site region 142835
Tssr142836 17 17904038 to 17904047 9 + TSS region transcription start site region 142836
Gm7531 17 17906549 to 17907275 726 - pseudogene predicted gene 7531
Tssr142837 17 17909467 to 17909468 1 + TSS region transcription start site region 142837
Cpgi8648 17 17909783 to 17910436 653 CpG island CpG island 8648
Tssr146578 17 17910195 to 17910219 24 - TSS region transcription start site region 146578
Tssr146579 17 17910244 to 17910273 29 - TSS region transcription start site region 146579
Gm9481 17 17910572 to 17913013 2441 + pseudogene predicted gene 9481
Gm7535 17 17911042 to 17912725 1683 - pseudogene predicted gene 7535
Tssr142838 17 17915914 to 17915947 33 + TSS region transcription start site region 142838
Tssr142839 17 17916184 to 17916196 12 + TSS region transcription start site region 142839
Tssr142840 17 17917484 to 17917495 11 + TSS region transcription start site region 142840
Tssr142841 17 17917575 to 17917586 11 + TSS region transcription start site region 142841
Tssr142842 17 17917788 to 17917802 14 + TSS region transcription start site region 142842
Tssr142843 17 17917830 to 17917839 9 + TSS region transcription start site region 142843
Tssr142844 17 17917862 to 17917868 6 + TSS region transcription start site region 142844
Tssr142845 17 17917877 to 17917889 12 + TSS region transcription start site region 142845
Gm5966 17 17920258 to 17921480 1222 + pseudogene predicted gene 5966
Tssr142846 17 17927993 to 17928022 29 + TSS region transcription start site region 142846
Tssr142847 17 17928229 to 17928239 10 + TSS region transcription start site region 142847
Tssr142848 17 17928278 to 17928304 26 + TSS region transcription start site region 142848
Tssr142849 17 17928338 to 17928381 43 + TSS region transcription start site region 142849
Tssr142850 17 17931997 to 17932008 11 + TSS region transcription start site region 142850
Tssr142851 17 17932292 to 17932319 27 + TSS region transcription start site region 142851
Tssr142852 17 17937758 to 17937778 20 + TSS region transcription start site region 142852
Tssr142853 17 17939583 to 17939603 20 + TSS region transcription start site region 142853
Tssr142854 17 17949945 to 17949980 35 + TSS region transcription start site region 142854
Fpr3 17 17970458 to 17971677 1219 + protein coding gene formyl peptide receptor 3
Fpr-rs5 17 17990498 to 17991464 966 + pseudogene formyl peptide receptor, related sequence 5
Fpr-rs4 17 18021733 to 18022704 971 + protein coding gene formyl peptide receptor, related sequence 4
Vmn2r124 17 18049484 to 18074220 24736 + protein coding gene vomeronasal 2, receptor 124
Vmn2r91 17 18085057 to 18136643 51586 + protein coding gene vomeronasal 2, receptor 91
Vmn2r92 17 18151930 to 18185178 33248 + protein coding gene vomeronasal 2, receptor 92
Gm29986 17 18219105 to 18234716 15611 - protein coding gene predicted gene, 29986
Tssr146580 17 18231552 to 18231559 7 - TSS region transcription start site region 146580
Vmn2r94 17 18243570 to 18277566 33996 - protein coding gene vomeronasal 2, receptor 94
Vmn2r93 17 18298281 to 18326441 28160 + protein coding gene vomeronasal 2, receptor 93
Vmn2r95 17 18424104 to 18452324 28220 + protein coding gene vomeronasal 2, receptor 95
Gm49963 17 18476532 to 18476654 122 - pseudogene predicted gene, 49963
Vmn2r-ps114 17 18493743 to 18494958 1215 + pseudogene vomeronasal 2, receptor, pseudogene 114
D17Mit59 17 18502799 to 18502945 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 59
Vmn2r96 17 18573255 to 18598157 24902 + protein coding gene vomeronasal 2, receptor 96
Vmn2r-ps115 17 18694403 to 18707120 12717 + pseudogene vomeronasal 2, receptor, pseudogene 115
Vmn2r-ps116 17 18763265 to 18763390 125 + pseudogene vomeronasal 2, receptor, pseudogene 116
Vmn2r-ps117 17 18822560 to 18838742 16182 + pseudogene vomeronasal 2, receptor, pseudogene 117
Vmn2r97 17 18914322 to 18948071 33749 + protein coding gene vomeronasal 2, receptor 97
Gm41538 17 18954534 to 18969041 14507 - lncRNA gene predicted gene, 41538
Tssr142855 17 18958079 to 18958084 5 + TSS region transcription start site region 142855
Tssr146581 17 18959097 to 18959100 3 - TSS region transcription start site region 146581
Tssr146582 17 18968981 to 18968998 17 - TSS region transcription start site region 146582
Tssr146583 17 18969027 to 18969060 33 - TSS region transcription start site region 146583
Vmn2r-ps118 17 18989618 to 18990880 1262 + pseudogene vomeronasal 2, receptor, pseudogene 118
Tssr142856 17 19031812 to 19031817 5 + TSS region transcription start site region 142856
Vmn2r98 17 19053493 to 19081311 27818 + protein coding gene vomeronasal 2, receptor 98
D17Jcs88 17 19060002 to 19060201 199 DNA segment DNA segment, Chr 17, John C. Schimenti 88