Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:17374623-17874634

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8642 17 17373840 to 17374708 868 CpG island CpG island 8642
Riok2 17 17374332 to 17394899 20567 + protein coding gene RIO kinase 2
Tssr142785 17 17374615 to 17374624 9 + TSS region transcription start site region 142785
Gm26873 17 17389943 to 17411993 22050 - antisense lncRNA gene predicted gene, 26873
Tssr142786 17 17402683 to 17402771 88 + TSS region transcription start site region 142786
Lix1 17 17402686 to 17459387 56701 + protein coding gene limb and CNS expressed 1
Tssr142787 17 17402818 to 17402829 11 + TSS region transcription start site region 142787
Tssr142788 17 17402852 to 17402863 11 + TSS region transcription start site region 142788
Tssr142789 17 17402865 to 17402910 45 + TSS region transcription start site region 142789
Tssr142790 17 17402916 to 17402921 5 + TSS region transcription start site region 142790
Tssr142791 17 17402926 to 17402941 15 + TSS region transcription start site region 142791
Tssr142792 17 17402969 to 17402979 10 + TSS region transcription start site region 142792
Tssr146548 17 17410850 to 17410858 8 - TSS region transcription start site region 146548
Tssr146549 17 17416413 to 17416418 5 - TSS region transcription start site region 146549
Tssr142793 17 17448860 to 17448884 24 + TSS region transcription start site region 142793
Tssr142794 17 17448894 to 17448924 30 + TSS region transcription start site region 142794
Tssr142795 17 17491375 to 17491400 25 + TSS region transcription start site region 142795
Gm41537 17 17491399 to 17513302 21903 + lncRNA gene predicted gene, 41537
Tssr142796 17 17491485 to 17491496 11 + TSS region transcription start site region 142796
Tssr142797 17 17491512 to 17491534 22 + TSS region transcription start site region 142797
Gm5232 17 17500343 to 17500944 601 + pseudogene predicted gene 5232
Tssr146550 17 17521642 to 17521652 10 - TSS region transcription start site region 146550
Tssr146551 17 17526667 to 17526679 12 - TSS region transcription start site region 146551
Lnpep 17 17527723 to 17624489 96766 - protein coding gene leucyl/cystinyl aminopeptidase
Tssr146552 17 17550717 to 17550730 13 - TSS region transcription start site region 146552
Gm49784 17 17593683 to 17594776 1093 - unclassified gene predicted gene, 49784
Tssr146553 17 17599743 to 17599785 42 - TSS region transcription start site region 146553
Tssr146554 17 17600354 to 17600387 33 - TSS region transcription start site region 146554
Tssr146555 17 17608209 to 17608212 3 - TSS region transcription start site region 146555
Cpgi8643 17 17623768 to 17625682 1914 CpG island CpG island 8643
Tssr146556 17 17624436 to 17624455 19 - TSS region transcription start site region 146556
Tssr146557 17 17624458 to 17624496 38 - TSS region transcription start site region 146557
Tssr146558 17 17624564 to 17624573 9 - TSS region transcription start site region 146558
Tssr146559 17 17624593 to 17624617 24 - TSS region transcription start site region 146559
Tssr146560 17 17624623 to 17624634 11 - TSS region transcription start site region 146560
Tssr146561 17 17624637 to 17624652 15 - TSS region transcription start site region 146561
Tssr142798 17 17624709 to 17624726 17 + TSS region transcription start site region 142798
Tssr142799 17 17624739 to 17624754 15 + TSS region transcription start site region 142799
Tssr146562 17 17625031 to 17625067 36 - TSS region transcription start site region 146562
Tssr146563 17 17625267 to 17625293 26 - TSS region transcription start site region 146563
Tssr146564 17 17625311 to 17625361 50 - TSS region transcription start site region 146564
Tssr142800 17 17625464 to 17625503 39 + TSS region transcription start site region 142800
Gm7513 17 17648821 to 17649883 1062 + pseudogene predicted gene 7513
Gm49787 17 17654865 to 17658887 4022 - pseudogene predicted gene, 49787
Vmn2r90 17 17703941 to 17734167 30226 + protein coding gene vomeronasal 2, receptor 90
Gm23837 17 17783132 to 17783417 285 + unclassified non-coding RNA gene predicted gene, 23837
Tssr146565 17 17826861 to 17826872 11 - TSS region transcription start site region 146565
Cpgi8644 17 17826924 to 17827457 533 CpG island CpG island 8644
Tssr142801 17 17826947 to 17826964 17 + TSS region transcription start site region 142801
Tssr5018 17 17827093 to 17827121 28 + TSS region transcription start site region 5018
Tssr142802 17 17827134 to 17827163 29 + TSS region transcription start site region 142802
Spaca6 17 17827158 to 17843009 15851 + protein coding gene sperm acrosome associated 6
Mirc9 17 17830188 to 17830879 691 complex/cluster/region microRNA cluster 9, including Mir99b through Mir125a
Mir99b 17 17830188 to 17830257 69 + miRNA gene microRNA 99b
Gm25927 17 17830343 to 17830459 116 - miRNA gene predicted gene, 25927
Mirlet7e 17 17830352 to 17830444 92 + miRNA gene microRNA let7e
Tssr142803 17 17830620 to 17830634 14 + TSS region transcription start site region 142803
Mir125a 17 17830812 to 17830879 67 + miRNA gene microRNA 125a
Tssr142804 17 17830876 to 17830880 4 + TSS region transcription start site region 142804
Tssr142805 17 17831047 to 17831069 22 + TSS region transcription start site region 142805
Tssr142806 17 17831076 to 17831095 19 + TSS region transcription start site region 142806
Tssr142807 17 17831137 to 17831145 8 + TSS region transcription start site region 142807
Tssr142808 17 17831298 to 17831316 18 + TSS region transcription start site region 142808
Tssr5019 17 17831642 to 17831654 12 + TSS region transcription start site region 5019
Tssr5020 17 17832459 to 17832473 14 + TSS region transcription start site region 5020
Tssr142809 17 17832971 to 17832975 4 + TSS region transcription start site region 142809
Cpgi8645 17 17837716 to 17838628 912 CpG island CpG island 8645
Tssr142810 17 17838071 to 17838088 17 + TSS region transcription start site region 142810
Tssr146566 17 17838202 to 17838208 6 - TSS region transcription start site region 146566
Tssr142811 17 17838308 to 17838333 25 + TSS region transcription start site region 142811
Tssr142812 17 17838389 to 17838443 54 + TSS region transcription start site region 142812
Tssr142813 17 17838457 to 17838475 18 + TSS region transcription start site region 142813
Has1 17 17843323 to 17855205 11882 - protein coding gene hyaluronan synthase 1
Cpgi8646 17 17843925 to 17844304 379 CpG island CpG island 8646
Cpgi8647 17 17849899 to 17850644 745 CpG island CpG island 8647
Tssr142814 17 17850019 to 17850051 32 + TSS region transcription start site region 142814
Gm36907 17 17850134 to 17866291 16157 + lncRNA gene predicted gene, 36907
Tssr146567 17 17855200 to 17855205 5 - TSS region transcription start site region 146567
Tssr142815 17 17865451 to 17865471 20 + TSS region transcription start site region 142815
Tssr142816 17 17867055 to 17867062 7 + TSS region transcription start site region 142816
Tssr142817 17 17867339 to 17867350 11 + TSS region transcription start site region 142817
Tssr5021 17 17871141 to 17871150 9 + TSS region transcription start site region 5021
Tssr5022 17 17871165 to 17871173 8 + TSS region transcription start site region 5022
Tssr5023 17 17871694 to 17871707 13 - TSS region transcription start site region 5023
Tssr142818 17 17871963 to 17871972 9 + TSS region transcription start site region 142818
Tssr142819 17 17873739 to 17873745 6 + TSS region transcription start site region 142819