Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:16791642-18871654

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D17Jcs80 17 16800850 to 16801042 192 DNA segment DNA segment, Chr 17, John C. Schimenti 80
Tssr146544 17 16819933 to 16819935 2 - TSS region transcription start site region 146544
Gm6705 17 16847395 to 16848079 684 + pseudogene predicted gene 6705
Gm49775 17 16868918 to 16869182 264 + pseudogene predicted gene, 49775
Tssr142774 17 16889254 to 16889263 9 + TSS region transcription start site region 142774
Gm7483 17 16889355 to 16890410 1055 + pseudogene predicted gene 7483
Tssr146545 17 16921323 to 16921362 39 - TSS region transcription start site region 146545
Tssr142775 17 16951522 to 16951553 31 + TSS region transcription start site region 142775
BC002059 17 16951539 to 16974157 22618 + lincRNA gene cDNA sequence BC002059
Tssr142776 17 16951556 to 16951589 33 + TSS region transcription start site region 142776
Tssr142777 17 17005109 to 17005136 27 + TSS region transcription start site region 142777
Tssr142778 17 17064042 to 17064077 35 + TSS region transcription start site region 142778
Zfp960 17 17064113 to 17089628 25515 + protein coding gene zinc finger protein 960
Zfp97 17 17121415 to 17146831 25416 + protein coding gene zinc finger protein 97
Gm38396 17 17178908 to 17206397 27489 + unclassified gene predicted gene, 38396
Tssr146546 17 17196111 to 17196115 4 - TSS region transcription start site region 146546
Tssr142779 17 17232141 to 17232147 6 + TSS region transcription start site region 142779
Gm5165 17 17234872 to 17266063 31191 + lincRNA gene predicted gene 5165
Tssr142780 17 17234891 to 17234942 51 + TSS region transcription start site region 142780
Tssr142781 17 17294437 to 17294461 24 + TSS region transcription start site region 142781
Gm6712 17 17294443 to 17319511 25068 + lincRNA gene predicted gene 6712
Gm41536 17 17341804 to 17368813 27009 - lncRNA gene predicted gene, 41536
Oaz1-ps 17 17345456 to 17346140 684 - pseudogene ornithine decarboxylase antizyme 1, pseudogene
Cpgi8641 17 17345824 to 17346241 417 CpG island CpG island 8641
Gm36768 17 17369177 to 17374102 4925 - lncRNA gene predicted gene, 36768
Cpgi8642 17 17373840 to 17374708 868 CpG island CpG island 8642
Tssr146547 17 17374207 to 17374242 35 - TSS region transcription start site region 146547
Tssr142782 17 17374264 to 17374278 14 + TSS region transcription start site region 142782
Riok2 17 17374332 to 17394899 20567 + protein coding gene RIO kinase 2
Tssr142783 17 17374519 to 17374541 22 + TSS region transcription start site region 142783
Tssr142784 17 17374546 to 17374594 48 + TSS region transcription start site region 142784
Tssr142785 17 17374615 to 17374624 9 + TSS region transcription start site region 142785
Gm26873 17 17389943 to 17411993 22050 - antisense lncRNA gene predicted gene, 26873
Tssr142786 17 17402683 to 17402771 88 + TSS region transcription start site region 142786
Lix1 17 17402686 to 17459387 56701 + protein coding gene limb and CNS expressed 1
Tssr142787 17 17402818 to 17402829 11 + TSS region transcription start site region 142787
Tssr142788 17 17402852 to 17402863 11 + TSS region transcription start site region 142788
Tssr142789 17 17402865 to 17402910 45 + TSS region transcription start site region 142789
Tssr142790 17 17402916 to 17402921 5 + TSS region transcription start site region 142790
Tssr142791 17 17402926 to 17402941 15 + TSS region transcription start site region 142791
Tssr142792 17 17402969 to 17402979 10 + TSS region transcription start site region 142792
Tssr146548 17 17410850 to 17410858 8 - TSS region transcription start site region 146548
Tssr146549 17 17416413 to 17416418 5 - TSS region transcription start site region 146549
Tssr142793 17 17448860 to 17448884 24 + TSS region transcription start site region 142793
Tssr142794 17 17448894 to 17448924 30 + TSS region transcription start site region 142794
Tssr142795 17 17491375 to 17491400 25 + TSS region transcription start site region 142795
Gm41537 17 17491399 to 17513302 21903 + lncRNA gene predicted gene, 41537
Tssr142796 17 17491485 to 17491496 11 + TSS region transcription start site region 142796
Tssr142797 17 17491512 to 17491534 22 + TSS region transcription start site region 142797
Gm5232 17 17500343 to 17500944 601 + pseudogene predicted gene 5232
Tssr146550 17 17521642 to 17521652 10 - TSS region transcription start site region 146550
Tssr146551 17 17526667 to 17526679 12 - TSS region transcription start site region 146551
Lnpep 17 17527723 to 17624489 96766 - protein coding gene leucyl/cystinyl aminopeptidase
Tssr146552 17 17550717 to 17550730 13 - TSS region transcription start site region 146552
Gm49784 17 17593683 to 17594776 1093 - unclassified gene predicted gene, 49784
Tssr146553 17 17599743 to 17599785 42 - TSS region transcription start site region 146553
Tssr146554 17 17600354 to 17600387 33 - TSS region transcription start site region 146554
Tssr146555 17 17608209 to 17608212 3 - TSS region transcription start site region 146555
Cpgi8643 17 17623768 to 17625682 1914 CpG island CpG island 8643
Tssr146556 17 17624436 to 17624455 19 - TSS region transcription start site region 146556
Tssr146557 17 17624458 to 17624496 38 - TSS region transcription start site region 146557
Tssr146558 17 17624564 to 17624573 9 - TSS region transcription start site region 146558
Tssr146559 17 17624593 to 17624617 24 - TSS region transcription start site region 146559
Tssr146560 17 17624623 to 17624634 11 - TSS region transcription start site region 146560
Tssr146561 17 17624637 to 17624652 15 - TSS region transcription start site region 146561
Tssr142798 17 17624709 to 17624726 17 + TSS region transcription start site region 142798
Tssr142799 17 17624739 to 17624754 15 + TSS region transcription start site region 142799
Tssr146562 17 17625031 to 17625067 36 - TSS region transcription start site region 146562
Tssr146563 17 17625267 to 17625293 26 - TSS region transcription start site region 146563
Tssr146564 17 17625311 to 17625361 50 - TSS region transcription start site region 146564
Tssr142800 17 17625464 to 17625503 39 + TSS region transcription start site region 142800
Gm7513 17 17648821 to 17649883 1062 + pseudogene predicted gene 7513
Gm49787 17 17654865 to 17658887 4022 - pseudogene predicted gene, 49787
Vmn2r90 17 17703941 to 17734167 30226 + protein coding gene vomeronasal 2, receptor 90
Gm23837 17 17783132 to 17783417 285 + unclassified non-coding RNA gene predicted gene, 23837
Tssr146565 17 17826861 to 17826872 11 - TSS region transcription start site region 146565
Cpgi8644 17 17826924 to 17827457 533 CpG island CpG island 8644
Tssr142801 17 17826947 to 17826964 17 + TSS region transcription start site region 142801
Tssr5018 17 17827093 to 17827121 28 + TSS region transcription start site region 5018
Tssr142802 17 17827134 to 17827163 29 + TSS region transcription start site region 142802
Spaca6 17 17827158 to 17843009 15851 + protein coding gene sperm acrosome associated 6
Mirc9 17 17830188 to 17830879 691 complex/cluster/region microRNA cluster 9, including Mir99b through Mir125a
Mir99b 17 17830188 to 17830257 69 + miRNA gene microRNA 99b
Gm25927 17 17830343 to 17830459 116 - miRNA gene predicted gene, 25927
Mirlet7e 17 17830352 to 17830444 92 + miRNA gene microRNA let7e
Tssr142803 17 17830620 to 17830634 14 + TSS region transcription start site region 142803
Mir125a 17 17830812 to 17830879 67 + miRNA gene microRNA 125a
Tssr142804 17 17830876 to 17830880 4 + TSS region transcription start site region 142804
Tssr142805 17 17831047 to 17831069 22 + TSS region transcription start site region 142805
Tssr142806 17 17831076 to 17831095 19 + TSS region transcription start site region 142806
Tssr142807 17 17831137 to 17831145 8 + TSS region transcription start site region 142807
Tssr142808 17 17831298 to 17831316 18 + TSS region transcription start site region 142808
Tssr5019 17 17831642 to 17831654 12 + TSS region transcription start site region 5019
Tssr5020 17 17832459 to 17832473 14 + TSS region transcription start site region 5020
Tssr142809 17 17832971 to 17832975 4 + TSS region transcription start site region 142809
Cpgi8645 17 17837716 to 17838628 912 CpG island CpG island 8645
Tssr142810 17 17838071 to 17838088 17 + TSS region transcription start site region 142810
Tssr146566 17 17838202 to 17838208 6 - TSS region transcription start site region 146566
Tssr142811 17 17838308 to 17838333 25 + TSS region transcription start site region 142811
Tssr142812 17 17838389 to 17838443 54 + TSS region transcription start site region 142812
Tssr142813 17 17838457 to 17838475 18 + TSS region transcription start site region 142813
Has1 17 17843323 to 17855205 11882 - protein coding gene hyaluronan synthase 1
Cpgi8646 17 17843925 to 17844304 379 CpG island CpG island 8646
Cpgi8647 17 17849899 to 17850644 745 CpG island CpG island 8647
Tssr142814 17 17850019 to 17850051 32 + TSS region transcription start site region 142814
Gm36907 17 17850134 to 17866291 16157 + lncRNA gene predicted gene, 36907
Tssr146567 17 17855200 to 17855205 5 - TSS region transcription start site region 146567
Tssr142815 17 17865451 to 17865471 20 + TSS region transcription start site region 142815
Tssr142816 17 17867055 to 17867062 7 + TSS region transcription start site region 142816
Tssr142817 17 17867339 to 17867350 11 + TSS region transcription start site region 142817
Tssr5021 17 17871141 to 17871150 9 + TSS region transcription start site region 5021
Tssr5022 17 17871165 to 17871173 8 + TSS region transcription start site region 5022
Tssr5023 17 17871694 to 17871707 13 - TSS region transcription start site region 5023
Tssr142818 17 17871963 to 17871972 9 + TSS region transcription start site region 142818
Tssr142819 17 17873739 to 17873745 6 + TSS region transcription start site region 142819
Fpr1 17 17876471 to 17883939 7468 - protein coding gene formyl peptide receptor 1
Tssr146568 17 17876668 to 17876680 12 - TSS region transcription start site region 146568
Tssr146569 17 17876706 to 17876718 12 - TSS region transcription start site region 146569
Tssr146570 17 17876991 to 17877002 11 - TSS region transcription start site region 146570
Tssr146571 17 17877018 to 17877031 13 - TSS region transcription start site region 146571
Tssr146572 17 17877105 to 17877125 20 - TSS region transcription start site region 146572
Tssr146573 17 17877535 to 17877552 17 - TSS region transcription start site region 146573
Tssr142820 17 17882874 to 17882912 38 + TSS region transcription start site region 142820
Tssr5024 17 17882948 to 17882979 31 + TSS region transcription start site region 5024
Tssr146574 17 17883920 to 17883954 34 - TSS region transcription start site region 146574
Tssr146575 17 17883963 to 17883974 11 - TSS region transcription start site region 146575
Tssr142821 17 17887093 to 17887135 42 + TSS region transcription start site region 142821
Tssr142822 17 17887807 to 17887818 11 + TSS region transcription start site region 142822
Fpr2 17 17887824 to 17893952 6128 + protein coding gene formyl peptide receptor 2
Tssr142823 17 17887826 to 17887837 11 + TSS region transcription start site region 142823
Tssr142824 17 17887840 to 17887865 25 + TSS region transcription start site region 142824
Tssr146576 17 17889729 to 17889734 5 - TSS region transcription start site region 146576
Tssr142825 17 17889944 to 17889960 16 + TSS region transcription start site region 142825
Tssr142826 17 17890098 to 17890112 14 + TSS region transcription start site region 142826
Tssr142827 17 17890348 to 17890352 4 + TSS region transcription start site region 142827
Tssr142828 17 17890588 to 17890600 12 + TSS region transcription start site region 142828
Tssr142829 17 17890609 to 17890630 21 + TSS region transcription start site region 142829
Tssr142830 17 17890638 to 17890645 7 + TSS region transcription start site region 142830
Tssr142831 17 17890697 to 17890700 3 + TSS region transcription start site region 142831
Tssr142832 17 17890741 to 17890752 11 + TSS region transcription start site region 142832
Tssr142833 17 17891414 to 17891426 12 + TSS region transcription start site region 142833
Tssr142834 17 17893810 to 17893859 49 + TSS region transcription start site region 142834
Tssr146577 17 17893949 to 17893961 12 - TSS region transcription start site region 146577
Tssr142835 17 17899627 to 17899632 5 + TSS region transcription start site region 142835
Tssr142836 17 17904038 to 17904047 9 + TSS region transcription start site region 142836
Gm7531 17 17906549 to 17907275 726 - pseudogene predicted gene 7531
Tssr142837 17 17909467 to 17909468 1 + TSS region transcription start site region 142837
Cpgi8648 17 17909783 to 17910436 653 CpG island CpG island 8648
Tssr146578 17 17910195 to 17910219 24 - TSS region transcription start site region 146578
Tssr146579 17 17910244 to 17910273 29 - TSS region transcription start site region 146579
Gm9481 17 17910572 to 17913013 2441 + pseudogene predicted gene 9481
Gm7535 17 17911042 to 17912725 1683 - pseudogene predicted gene 7535
Tssr142838 17 17915914 to 17915947 33 + TSS region transcription start site region 142838
Tssr142839 17 17916184 to 17916196 12 + TSS region transcription start site region 142839
Tssr142840 17 17917484 to 17917495 11 + TSS region transcription start site region 142840
Tssr142841 17 17917575 to 17917586 11 + TSS region transcription start site region 142841
Tssr142842 17 17917788 to 17917802 14 + TSS region transcription start site region 142842
Tssr142843 17 17917830 to 17917839 9 + TSS region transcription start site region 142843
Tssr142844 17 17917862 to 17917868 6 + TSS region transcription start site region 142844
Tssr142845 17 17917877 to 17917889 12 + TSS region transcription start site region 142845
Gm5966 17 17920258 to 17921480 1222 + pseudogene predicted gene 5966
Tssr142846 17 17927993 to 17928022 29 + TSS region transcription start site region 142846
Tssr142847 17 17928229 to 17928239 10 + TSS region transcription start site region 142847
Tssr142848 17 17928278 to 17928304 26 + TSS region transcription start site region 142848
Tssr142849 17 17928338 to 17928381 43 + TSS region transcription start site region 142849
Tssr142850 17 17931997 to 17932008 11 + TSS region transcription start site region 142850
Tssr142851 17 17932292 to 17932319 27 + TSS region transcription start site region 142851
Tssr142852 17 17937758 to 17937778 20 + TSS region transcription start site region 142852
Tssr142853 17 17939583 to 17939603 20 + TSS region transcription start site region 142853
Tssr142854 17 17949945 to 17949980 35 + TSS region transcription start site region 142854
Fpr3 17 17970458 to 17971677 1219 + protein coding gene formyl peptide receptor 3
Fpr-rs5 17 17990498 to 17991464 966 + pseudogene formyl peptide receptor, related sequence 5
Fpr-rs4 17 18021733 to 18022704 971 + protein coding gene formyl peptide receptor, related sequence 4
Vmn2r124 17 18049484 to 18074220 24736 + protein coding gene vomeronasal 2, receptor 124
Vmn2r91 17 18085057 to 18136643 51586 + protein coding gene vomeronasal 2, receptor 91
Vmn2r92 17 18151930 to 18185178 33248 + protein coding gene vomeronasal 2, receptor 92
Gm29986 17 18219105 to 18234716 15611 - protein coding gene predicted gene, 29986
Tssr146580 17 18231552 to 18231559 7 - TSS region transcription start site region 146580
Vmn2r94 17 18243570 to 18277566 33996 - protein coding gene vomeronasal 2, receptor 94
Vmn2r93 17 18298281 to 18326441 28160 + protein coding gene vomeronasal 2, receptor 93
Vmn2r95 17 18424104 to 18452324 28220 + protein coding gene vomeronasal 2, receptor 95
Gm49963 17 18476532 to 18476654 122 - pseudogene predicted gene, 49963
Vmn2r-ps114 17 18493743 to 18494958 1215 + pseudogene vomeronasal 2, receptor, pseudogene 114
D17Mit59 17 18502799 to 18502945 146 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 59
Vmn2r96 17 18573255 to 18598157 24902 + protein coding gene vomeronasal 2, receptor 96
Vmn2r-ps115 17 18694403 to 18707120 12717 + pseudogene vomeronasal 2, receptor, pseudogene 115
Vmn2r-ps116 17 18763265 to 18763390 125 + pseudogene vomeronasal 2, receptor, pseudogene 116
Vmn2r-ps117 17 18822560 to 18838742 16182 + pseudogene vomeronasal 2, receptor, pseudogene 117