Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:16455109-17555136

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41534 17 16235526 to 16492056 256530 + lncRNA gene predicted gene, 41534
D17Jcs82 17 16508771 to 16508961 190 DNA segment DNA segment, Chr 17, John C. Schimenti 82
Tssr142773 17 16557218 to 16557231 13 + TSS region transcription start site region 142773
Gm4786 17 16557246 to 16558043 797 + pseudogene predicted gene 4786
Gm17939 17 16558411 to 16559187 776 + pseudogene predicted gene, 17939
D17Jcs81 17 16615126 to 16615340 214 DNA segment DNA segment, Chr 17, John C. Schimenti 81
Radpf1 17 16615193 to 33600869 16985676 QTL radiation pulmonary fibrosis 1
D17Mit213 17 16615193 to 16615316 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 213
Gm3320 17 16669156 to 16670186 1030 - pseudogene predicted pseudogene 3320
Tssr146543 17 16669763 to 16669789 26 - TSS region transcription start site region 146543
Gm7477 17 16726453 to 16727116 663 + pseudogene predicted gene 7477
Gm5223 17 16781621 to 16782887 1266 + pseudogene predicted gene 5223
D17Jcs80 17 16800850 to 16801042 192 DNA segment DNA segment, Chr 17, John C. Schimenti 80
Tssr146544 17 16819933 to 16819935 2 - TSS region transcription start site region 146544
Gm6705 17 16847395 to 16848079 684 + pseudogene predicted gene 6705
Gm49775 17 16868918 to 16869182 264 + pseudogene predicted gene, 49775
Tssr142774 17 16889254 to 16889263 9 + TSS region transcription start site region 142774
Gm7483 17 16889355 to 16890410 1055 + pseudogene predicted gene 7483
Tssr146545 17 16921323 to 16921362 39 - TSS region transcription start site region 146545
Tssr142775 17 16951522 to 16951553 31 + TSS region transcription start site region 142775
BC002059 17 16951539 to 16974157 22618 + lincRNA gene cDNA sequence BC002059
Tssr142776 17 16951556 to 16951589 33 + TSS region transcription start site region 142776
Tssr142777 17 17005109 to 17005136 27 + TSS region transcription start site region 142777
Tssr142778 17 17064042 to 17064077 35 + TSS region transcription start site region 142778
Zfp960 17 17064113 to 17089628 25515 + protein coding gene zinc finger protein 960
Zfp97 17 17121415 to 17146831 25416 + protein coding gene zinc finger protein 97
Gm38396 17 17178908 to 17206397 27489 + unclassified gene predicted gene, 38396
Tssr146546 17 17196111 to 17196115 4 - TSS region transcription start site region 146546
Tssr142779 17 17232141 to 17232147 6 + TSS region transcription start site region 142779
Gm5165 17 17234872 to 17266063 31191 + lincRNA gene predicted gene 5165
Tssr142780 17 17234891 to 17234942 51 + TSS region transcription start site region 142780
Tssr142781 17 17294437 to 17294461 24 + TSS region transcription start site region 142781
Gm6712 17 17294443 to 17319511 25068 + lincRNA gene predicted gene 6712
Gm41536 17 17341804 to 17368813 27009 - lncRNA gene predicted gene, 41536
Oaz1-ps 17 17345456 to 17346140 684 - pseudogene ornithine decarboxylase antizyme 1, pseudogene
Cpgi8641 17 17345824 to 17346241 417 CpG island CpG island 8641
Gm36768 17 17369177 to 17374102 4925 - lncRNA gene predicted gene, 36768
Cpgi8642 17 17373840 to 17374708 868 CpG island CpG island 8642
Tssr146547 17 17374207 to 17374242 35 - TSS region transcription start site region 146547
Tssr142782 17 17374264 to 17374278 14 + TSS region transcription start site region 142782
Riok2 17 17374332 to 17394899 20567 + protein coding gene RIO kinase 2
Tssr142783 17 17374519 to 17374541 22 + TSS region transcription start site region 142783
Tssr142784 17 17374546 to 17374594 48 + TSS region transcription start site region 142784
Tssr142785 17 17374615 to 17374624 9 + TSS region transcription start site region 142785
Gm26873 17 17389943 to 17411993 22050 - antisense lncRNA gene predicted gene, 26873
Tssr142786 17 17402683 to 17402771 88 + TSS region transcription start site region 142786
Lix1 17 17402686 to 17459387 56701 + protein coding gene limb and CNS expressed 1
Tssr142787 17 17402818 to 17402829 11 + TSS region transcription start site region 142787
Tssr142788 17 17402852 to 17402863 11 + TSS region transcription start site region 142788
Tssr142789 17 17402865 to 17402910 45 + TSS region transcription start site region 142789
Tssr142790 17 17402916 to 17402921 5 + TSS region transcription start site region 142790
Tssr142791 17 17402926 to 17402941 15 + TSS region transcription start site region 142791
Tssr142792 17 17402969 to 17402979 10 + TSS region transcription start site region 142792
Tssr146548 17 17410850 to 17410858 8 - TSS region transcription start site region 146548
Tssr146549 17 17416413 to 17416418 5 - TSS region transcription start site region 146549
Tssr142793 17 17448860 to 17448884 24 + TSS region transcription start site region 142793
Tssr142794 17 17448894 to 17448924 30 + TSS region transcription start site region 142794
Tssr142795 17 17491375 to 17491400 25 + TSS region transcription start site region 142795
Gm41537 17 17491399 to 17513302 21903 + lncRNA gene predicted gene, 41537
Tssr142796 17 17491485 to 17491496 11 + TSS region transcription start site region 142796
Tssr142797 17 17491512 to 17491534 22 + TSS region transcription start site region 142797
Gm5232 17 17500343 to 17500944 601 + pseudogene predicted gene 5232
Tssr146550 17 17521642 to 17521652 10 - TSS region transcription start site region 146550
Tssr146551 17 17526667 to 17526679 12 - TSS region transcription start site region 146551
Lnpep 17 17527723 to 17624489 96766 - protein coding gene leucyl/cystinyl aminopeptidase
Tssr146552 17 17550717 to 17550730 13 - TSS region transcription start site region 146552