Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:15765126-17465340

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chd1 17 15704967 to 15772610 67643 + protein coding gene chromodomain helicase DNA binding protein 1
Tssr142771 17 15772289 to 15772293 4 + TSS region transcription start site region 142771
Tssr142772 17 15777568 to 15777571 3 + TSS region transcription start site region 142772
Rgmb 17 15804661 to 15831817 27156 - protein coding gene repulsive guidance molecule family member B
Tssr146532 17 15807080 to 15807094 14 - TSS region transcription start site region 146532
Cpgi8639 17 15825425 to 15827284 1859 CpG island CpG island 8639
Tssr146533 17 15826488 to 15826512 24 - TSS region transcription start site region 146533
Tssr146534 17 15826521 to 15826590 69 - TSS region transcription start site region 146534
Tssr146535 17 15829825 to 15829839 14 - TSS region transcription start site region 146535
Tssr146536 17 15829882 to 15829902 20 - TSS region transcription start site region 146536
Cpgi8640 17 15830361 to 15831424 1063 CpG island CpG island 8640
Tssr146537 17 15830786 to 15830797 11 - TSS region transcription start site region 146537
Tssr146538 17 15830804 to 15830816 12 - TSS region transcription start site region 146538
Tssr146539 17 15830830 to 15830849 19 - TSS region transcription start site region 146539
Tssr146540 17 15831032 to 15831102 70 - TSS region transcription start site region 146540
Tssr146541 17 15831172 to 15831195 23 - TSS region transcription start site region 146541
Tssr146542 17 15831228 to 15831251 23 - TSS region transcription start site region 146542
Gm3292 17 15833168 to 15833477 309 - pseudogene predicted gene 3292
Gm25598 17 15837549 to 15837655 106 - snRNA gene predicted gene, 25598
Eif3s6-ps3 17 15845280 to 15846628 1348 + pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 3
D17Mit261 17 15858247 to 15858421 174 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 261
Gm41533 17 15877081 to 15907917 30836 - lncRNA gene predicted gene, 41533
D17Jcs85 17 16008321 to 16008544 223 DNA segment DNA segment, Chr 17, John C. Schimenti 85
Gm49777 17 16163079 to 16163564 485 - pseudogene predicted gene, 49777
Gm49778 17 16163151 to 16166084 2933 + lincRNA gene predicted gene, 49778
D17Jcs84 17 16186658 to 16186832 174 DNA segment DNA segment, Chr 17, John C. Schimenti 84
Eosnp1 17 16189814 to 16189814 0 QTL percent eosinophils 1
Gm41534 17 16235526 to 16492056 256530 + lncRNA gene predicted gene, 41534
D17Jcs83 17 16317618 to 16317785 167 DNA segment DNA segment, Chr 17, John C. Schimenti 83
Gm46610 17 16320400 to 16320807 407 - pseudogene predicted gene, 46610
D17Mit165 17 16404719 to 16404842 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 165
D17Jcs82 17 16508771 to 16508961 190 DNA segment DNA segment, Chr 17, John C. Schimenti 82
Tssr142773 17 16557218 to 16557231 13 + TSS region transcription start site region 142773
Gm4786 17 16557246 to 16558043 797 + pseudogene predicted gene 4786
Gm17939 17 16558411 to 16559187 776 + pseudogene predicted gene, 17939
D17Jcs81 17 16615126 to 16615340 214 DNA segment DNA segment, Chr 17, John C. Schimenti 81
D17Mit213 17 16615193 to 16615316 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 213
Radpf1 17 16615193 to 33600869 16985676 QTL radiation pulmonary fibrosis 1
Gm3320 17 16669156 to 16670186 1030 - pseudogene predicted pseudogene 3320
Tssr146543 17 16669763 to 16669789 26 - TSS region transcription start site region 146543
Gm7477 17 16726453 to 16727116 663 + pseudogene predicted gene 7477
Gm5223 17 16781621 to 16782887 1266 + pseudogene predicted gene 5223
D17Jcs80 17 16800850 to 16801042 192 DNA segment DNA segment, Chr 17, John C. Schimenti 80
Tssr146544 17 16819933 to 16819935 2 - TSS region transcription start site region 146544
Gm6705 17 16847395 to 16848079 684 + pseudogene predicted gene 6705
Gm49775 17 16868918 to 16869182 264 + pseudogene predicted gene, 49775
Tssr142774 17 16889254 to 16889263 9 + TSS region transcription start site region 142774
Gm7483 17 16889355 to 16890410 1055 + pseudogene predicted gene 7483
Tssr146545 17 16921323 to 16921362 39 - TSS region transcription start site region 146545
Tssr142775 17 16951522 to 16951553 31 + TSS region transcription start site region 142775
BC002059 17 16951539 to 16974157 22618 + lincRNA gene cDNA sequence BC002059
Tssr142776 17 16951556 to 16951589 33 + TSS region transcription start site region 142776
Tssr142777 17 17005109 to 17005136 27 + TSS region transcription start site region 142777
Tssr142778 17 17064042 to 17064077 35 + TSS region transcription start site region 142778
Zfp960 17 17064113 to 17089628 25515 + protein coding gene zinc finger protein 960
Zfp97 17 17121415 to 17146831 25416 + protein coding gene zinc finger protein 97
Gm38396 17 17178908 to 17206397 27489 + unclassified gene predicted gene, 38396
Tssr146546 17 17196111 to 17196115 4 - TSS region transcription start site region 146546
Tssr142779 17 17232141 to 17232147 6 + TSS region transcription start site region 142779
Gm5165 17 17234872 to 17266063 31191 + lincRNA gene predicted gene 5165
Tssr142780 17 17234891 to 17234942 51 + TSS region transcription start site region 142780
Tssr142781 17 17294437 to 17294461 24 + TSS region transcription start site region 142781
Gm6712 17 17294443 to 17319511 25068 + lincRNA gene predicted gene 6712
Gm41536 17 17341804 to 17368813 27009 - lncRNA gene predicted gene, 41536
Oaz1-ps 17 17345456 to 17346140 684 - pseudogene ornithine decarboxylase antizyme 1, pseudogene
Cpgi8641 17 17345824 to 17346241 417 CpG island CpG island 8641
Gm36768 17 17369177 to 17374102 4925 - lncRNA gene predicted gene, 36768
Cpgi8642 17 17373840 to 17374708 868 CpG island CpG island 8642
Tssr146547 17 17374207 to 17374242 35 - TSS region transcription start site region 146547
Tssr142782 17 17374264 to 17374278 14 + TSS region transcription start site region 142782
Riok2 17 17374332 to 17394899 20567 + protein coding gene RIO kinase 2
Tssr142783 17 17374519 to 17374541 22 + TSS region transcription start site region 142783
Tssr142784 17 17374546 to 17374594 48 + TSS region transcription start site region 142784
Tssr142785 17 17374615 to 17374624 9 + TSS region transcription start site region 142785
Gm26873 17 17389943 to 17411993 22050 - antisense lncRNA gene predicted gene, 26873
Tssr142786 17 17402683 to 17402771 88 + TSS region transcription start site region 142786
Lix1 17 17402686 to 17459387 56701 + protein coding gene limb and CNS expressed 1
Tssr142787 17 17402818 to 17402829 11 + TSS region transcription start site region 142787
Tssr142788 17 17402852 to 17402863 11 + TSS region transcription start site region 142788
Tssr142789 17 17402865 to 17402910 45 + TSS region transcription start site region 142789
Tssr142790 17 17402916 to 17402921 5 + TSS region transcription start site region 142790
Tssr142791 17 17402926 to 17402941 15 + TSS region transcription start site region 142791
Tssr142792 17 17402969 to 17402979 10 + TSS region transcription start site region 142792
Tssr146548 17 17410850 to 17410858 8 - TSS region transcription start site region 146548
Tssr146549 17 17416413 to 17416418 5 - TSS region transcription start site region 146549
Tssr142793 17 17448860 to 17448884 24 + TSS region transcription start site region 142793
Tssr142794 17 17448894 to 17448924 30 + TSS region transcription start site region 142794