Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:15397080-16217094

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam120b 17 15396202 to 15433581 37379 + protein coding gene family with sequence similarity 120, member B
A430055H19Rik 17 15399655 to 15401442 1787 unclassified gene RIKEN cDNA A430055H19 gene
Gm49668 17 15421802 to 15434965 13163 - lincRNA gene predicted gene, 49668
Tssr146514 17 15432209 to 15432220 11 - TSS region transcription start site region 146514
Tssr146515 17 15433312 to 15433322 10 - TSS region transcription start site region 146515
Tssr146516 17 15433329 to 15433337 8 - TSS region transcription start site region 146516
Tssr146517 17 15434819 to 15434850 31 - TSS region transcription start site region 146517
Tssr146518 17 15434851 to 15434867 16 - TSS region transcription start site region 146518
Gm49669 17 15459805 to 15460160 355 + pseudogene predicted gene, 49669
Psmb1 17 15475721 to 15498276 22555 - protein coding gene proteasome (prosome, macropain) subunit, beta type 1
Tssr146519 17 15476162 to 15476196 34 - TSS region transcription start site region 146519
Cpgi8632 17 15497850 to 15498560 710 CpG island CpG island 8632
Tssr146520 17 15498263 to 15498274 11 - TSS region transcription start site region 146520
Tssr146521 17 15498282 to 15498304 22 - TSS region transcription start site region 146521
Cpgi8633 17 15499690 to 15500505 815 CpG island CpG island 8633
Tbp 17 15499888 to 15517427 17539 + protein coding gene TATA box binding protein
Tssr146522 17 15499894 to 15499909 15 - TSS region transcription start site region 146522
Tssr142753 17 15499908 to 15499959 51 + TSS region transcription start site region 142753
Tssr142754 17 15499961 to 15499976 15 + TSS region transcription start site region 142754
Tssr142755 17 15500144 to 15500183 39 + TSS region transcription start site region 142755
Pdcd2 17 15521575 to 15527301 5726 - protein coding gene programmed cell death 2
Cpgi8634 17 15526801 to 15527506 705 CpG island CpG island 8634
Tssr146523 17 15527267 to 15527278 11 - TSS region transcription start site region 146523
Tssr146524 17 15527281 to 15527315 34 - TSS region transcription start site region 146524
Tssr146525 17 15527317 to 15527329 12 - TSS region transcription start site region 146525
Gm7177 17 15535025 to 15536480 1455 - pseudogene predicted gene 7177
Cpgi8635 17 15536439 to 15536877 438 CpG island CpG island 8635
Prdm9 17 15543079 to 15564354 21275 - protein coding gene PR domain containing 9
Gm18564 17 15547845 to 15550394 2549 + pseudogene predicted gene, 18564
Cpgi8636 17 15563788 to 15564632 844 CpG island CpG island 8636
Tssr146526 17 15564299 to 15564313 14 - TSS region transcription start site region 146526
Tssr146527 17 15564322 to 15564359 37 - TSS region transcription start site region 146527
Gm6686 17 15566164 to 15566421 257 - pseudogene predicted pseudogene 6686
Gm7450 17 15575999 to 15577151 1152 - pseudogene predicted gene 7450
Cpgi8637 17 15577356 to 15577608 252 CpG island CpG island 8637
Tssr5017 17 15577493 to 15577497 4 - TSS region transcription start site region 5017
Tssr142756 17 15597895 to 15597911 16 + TSS region transcription start site region 142756
Gm3507 17 15597928 to 15598445 517 + pseudogene predicted gene 3507
4933401D09Rik 17 15631788 to 15641102 9314 + lincRNA gene RIKEN cDNA 4933401D09 gene
D17Jcs22 17 15683013 to 15683226 213 DNA segment DNA segment, Chr 17, John C. Schimenti 22
5830433I10Rik 17 15702465 to 15704708 2243 - lncRNA gene RIKEN cDNA 5830433I10 gene
Cpgi8638 17 15704260 to 15706179 1919 CpG island CpG island 8638
Tssr146528 17 15704422 to 15704431 9 - TSS region transcription start site region 146528
Tssr146529 17 15704792 to 15704810 18 - TSS region transcription start site region 146529
Tssr142757 17 15704963 to 15704994 31 + TSS region transcription start site region 142757
Chd1 17 15704967 to 15772610 67643 + protein coding gene chromodomain helicase DNA binding protein 1
Tssr142758 17 15705002 to 15705033 31 + TSS region transcription start site region 142758
Tssr142759 17 15705097 to 15705142 45 + TSS region transcription start site region 142759
Tssr146530 17 15706112 to 15706133 21 - TSS region transcription start site region 146530
Tssr146531 17 15706144 to 15706163 19 - TSS region transcription start site region 146531
Tssr142760 17 15706551 to 15706561 10 + TSS region transcription start site region 142760
Tssr142761 17 15706577 to 15706586 9 + TSS region transcription start site region 142761
Tssr142762 17 15731839 to 15731855 16 + TSS region transcription start site region 142762
Tssr142763 17 15731970 to 15731983 13 + TSS region transcription start site region 142763
Tssr142764 17 15735758 to 15735807 49 + TSS region transcription start site region 142764
Tssr142765 17 15745782 to 15745787 5 + TSS region transcription start site region 142765
Tssr142766 17 15747798 to 15747813 15 + TSS region transcription start site region 142766
Tssr142767 17 15751314 to 15751318 4 + TSS region transcription start site region 142767
Tssr142768 17 15755019 to 15755058 39 + TSS region transcription start site region 142768
D17Jcs21 17 15756389 to 15756581 192 DNA segment DNA segment, Chr 17, John C. Schimenti 21
Tssr142769 17 15758574 to 15758585 11 + TSS region transcription start site region 142769
Tssr142770 17 15758626 to 15758638 12 + TSS region transcription start site region 142770
Tssr142771 17 15772289 to 15772293 4 + TSS region transcription start site region 142771
Tssr142772 17 15777568 to 15777571 3 + TSS region transcription start site region 142772
Rgmb 17 15804661 to 15831817 27156 - protein coding gene repulsive guidance molecule family member B
Tssr146532 17 15807080 to 15807094 14 - TSS region transcription start site region 146532
Cpgi8639 17 15825425 to 15827284 1859 CpG island CpG island 8639
Tssr146533 17 15826488 to 15826512 24 - TSS region transcription start site region 146533
Tssr146534 17 15826521 to 15826590 69 - TSS region transcription start site region 146534
Tssr146535 17 15829825 to 15829839 14 - TSS region transcription start site region 146535
Tssr146536 17 15829882 to 15829902 20 - TSS region transcription start site region 146536
Cpgi8640 17 15830361 to 15831424 1063 CpG island CpG island 8640
Tssr146537 17 15830786 to 15830797 11 - TSS region transcription start site region 146537
Tssr146538 17 15830804 to 15830816 12 - TSS region transcription start site region 146538
Tssr146539 17 15830830 to 15830849 19 - TSS region transcription start site region 146539
Tssr146540 17 15831032 to 15831102 70 - TSS region transcription start site region 146540
Tssr146541 17 15831172 to 15831195 23 - TSS region transcription start site region 146541
Tssr146542 17 15831228 to 15831251 23 - TSS region transcription start site region 146542
Gm3292 17 15833168 to 15833477 309 - pseudogene predicted gene 3292
Gm25598 17 15837549 to 15837655 106 - snRNA gene predicted gene, 25598
Eif3s6-ps3 17 15845280 to 15846628 1348 + pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 3
D17Mit261 17 15858247 to 15858421 174 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 261
Gm41533 17 15877081 to 15907917 30836 - lncRNA gene predicted gene, 41533
D17Jcs85 17 16008321 to 16008544 223 DNA segment DNA segment, Chr 17, John C. Schimenti 85
Gm49777 17 16163079 to 16163564 485 - pseudogene predicted gene, 49777
Gm49778 17 16163151 to 16166084 2933 + lincRNA gene predicted gene, 49778
D17Jcs84 17 16186658 to 16186832 174 DNA segment DNA segment, Chr 17, John C. Schimenti 84
Eosnp1 17 16189814 to 16189814 0 QTL percent eosinophils 1